Wall clock time and date at job start Mon Mar 30 2020 04:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48059 * 111.16117 * 2 1 4 4 C 1.53999 * 107.13910 * 145.63407 * 3 2 1 5 5 C 1.54593 * 105.13972 * 358.91728 * 4 3 2 6 6 H 1.09002 * 110.72442 * 96.40052 * 5 4 3 7 7 C 1.53002 * 110.87865 * 219.61172 * 5 4 3 8 8 N 1.46500 * 109.47292 * 180.02562 * 7 5 4 9 9 C 1.36930 * 120.00154 * 270.00317 * 8 7 5 10 10 H 1.08001 * 120.00230 * 141.33446 * 9 8 7 11 11 C 1.38811 * 120.00166 * 321.32923 * 9 8 7 12 12 N 1.31623 * 120.00019 * 339.61734 * 11 9 8 13 13 Si 1.86803 * 120.00124 * 159.61678 * 11 9 8 14 14 H 1.48499 * 109.47054 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46920 * 120.00259 * 13 11 9 16 16 H 1.48500 * 109.46848 * 240.00035 * 13 11 9 17 17 C 1.46498 * 119.99716 * 90.00345 * 8 7 5 18 18 C 1.54271 * 110.03004 * 242.53136 * 17 8 7 19 19 C 1.54973 * 104.15807 * 217.13405 * 18 17 8 20 20 C 1.54891 * 102.77392 * 37.89064 * 19 18 17 21 21 C 1.53869 * 110.03196 * 125.31270 * 17 8 7 22 22 C 1.48537 * 110.99767 * 117.39796 * 2 1 3 23 23 H 1.09005 * 109.47207 * 302.60156 * 1 2 3 24 24 H 1.08999 * 109.47155 * 62.60048 * 1 2 3 25 25 H 1.09002 * 109.47401 * 182.60030 * 1 2 3 26 26 H 1.08999 * 109.75985 * 26.32141 * 3 2 1 27 27 H 1.08999 * 110.16377 * 265.17163 * 3 2 1 28 28 H 1.09004 * 110.31030 * 239.99960 * 4 3 2 29 29 H 1.09004 * 110.38996 * 117.87382 * 4 3 2 30 30 H 1.08997 * 109.47191 * 300.04385 * 7 5 4 31 31 H 1.09004 * 109.46763 * 60.04618 * 7 5 4 32 32 H 0.96998 * 119.99896 * 175.03506 * 12 11 9 33 33 H 1.09003 * 110.01624 * 3.91868 * 17 8 7 34 34 H 1.08990 * 110.48549 * 335.78126 * 18 17 8 35 35 H 1.09003 * 110.48364 * 98.42980 * 18 17 8 36 36 H 1.08997 * 110.72149 * 279.57453 * 19 18 17 37 37 H 1.08999 * 110.91998 * 156.29278 * 19 18 17 38 38 H 1.09003 * 110.48609 * 203.40677 * 20 19 18 39 39 H 1.08992 * 110.59997 * 80.81733 * 20 19 18 40 40 H 1.08998 * 110.03341 * 238.56579 * 21 17 8 41 41 H 1.08997 * 110.03463 * 359.95240 * 21 17 8 42 42 H 1.09000 * 110.66179 * 81.84606 * 22 2 1 43 43 H 1.08995 * 110.66747 * 318.87761 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0035 1.3808 0.0000 4 6 3.3001 1.3655 0.8307 5 6 3.4490 -0.0934 1.3199 6 1 4.1133 -0.6547 0.6628 7 6 3.9558 -0.1356 2.7630 8 7 4.0860 -1.5296 3.1943 9 6 3.0283 -2.1639 3.7892 10 1 2.8249 -3.2006 3.5652 11 6 2.2174 -1.4744 4.6803 12 7 2.6609 -0.3805 5.2627 13 14 0.4968 -2.0990 5.0528 14 1 0.2408 -3.3381 4.2754 15 1 0.3801 -2.3925 6.5038 16 1 -0.4982 -1.0631 4.6758 17 6 5.3479 -2.2449 2.9893 18 6 5.1280 -3.4441 2.0440 19 6 6.0507 -4.5507 2.6145 20 6 5.9165 -4.3532 4.1449 21 6 5.8494 -2.8224 4.3244 22 6 2.0013 -0.6381 1.2312 23 1 -0.3634 0.5537 0.8658 24 1 -0.3633 0.4729 -0.9124 25 1 -0.3634 -1.0266 0.0466 26 1 1.2791 2.0563 0.4549 27 1 2.2194 1.7000 -1.0196 28 1 3.2130 2.0425 1.6805 29 1 4.1518 1.6453 0.2105 30 1 4.9272 0.3553 2.8214 31 1 3.2481 0.3806 3.4118 32 1 2.0707 0.1408 5.8290 33 1 6.0949 -1.5709 2.5698 34 1 4.0866 -3.7647 2.0705 35 1 5.4233 -3.1871 1.0267 36 1 7.0811 -4.3969 2.2940 37 1 5.6998 -5.5399 2.3205 38 1 6.7870 -4.7598 4.6598 39 1 5.0036 -4.8208 4.5134 40 1 6.8402 -2.4295 4.5525 41 1 5.1544 -2.5697 5.1251 42 1 2.0040 -1.7235 1.1314 43 1 1.4219 -0.3346 2.1031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687797927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:46 Heat of formation + Delta-G solvation = 10.556204 kcal Electronic energy + Delta-G solvation = -20273.995751 eV Core-core repulsion = 17546.839198 eV Total energy + Delta-G solvation = -2727.156553 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.54301 -37.44651 -34.39113 -31.99579 -30.71202 -28.53507 -27.76499 -26.49446 -26.04814 -24.27023 -21.86852 -20.39202 -19.95808 -19.28805 -18.91701 -16.38134 -15.43462 -15.27970 -14.77762 -14.59418 -14.19470 -13.80417 -13.28588 -13.13845 -12.88789 -12.52328 -12.42443 -11.88108 -11.36743 -11.25082 -11.15463 -11.01412 -10.86582 -10.75992 -10.47111 -10.36680 -10.31526 -10.26142 -10.16581 -10.02431 -9.82633 -9.58329 -9.48618 -9.36059 -8.40316 -7.93791 -6.50372 -5.71079 -3.34625 3.33047 3.43885 3.45780 4.49349 4.57972 5.21140 5.28113 5.33905 5.41855 5.47903 5.51931 5.60416 5.72655 5.82198 5.89523 6.02602 6.06748 6.14037 6.21377 6.29824 6.34884 6.35990 6.42477 6.47645 6.55441 6.60807 6.64475 6.67884 6.79874 6.82968 6.91019 6.99060 7.05934 7.09292 7.24504 7.43939 7.45885 7.57756 7.74775 7.87626 8.57651 9.25175 9.87669 10.47138 11.23794 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.009449 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.338888 B = 2962.493546 C = 3846.282624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.533 5.533 3 C 0.039 3.961 4 C -0.128 4.128 5 C -0.102 4.102 6 H 0.062 0.938 7 C 0.155 3.845 8 N -0.577 5.577 9 C -0.236 4.236 10 H 0.059 0.941 11 C 0.013 3.987 12 N -0.886 5.886 13 Si 0.879 3.121 14 H -0.275 1.275 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.171 3.829 18 C -0.134 4.134 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.131 4.131 22 C 0.063 3.937 23 H 0.023 0.977 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.023 0.977 31 H 0.093 0.907 32 H 0.250 0.750 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.038 0.962 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.931 -0.038 -7.033 7.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.258 5.258 3 C -0.089 4.089 4 C -0.166 4.166 5 C -0.123 4.123 6 H 0.080 0.920 7 C 0.028 3.972 8 N -0.296 5.296 9 C -0.366 4.366 10 H 0.077 0.923 11 C -0.187 4.187 12 N -0.529 5.529 13 Si 0.709 3.291 14 H -0.200 1.200 15 H -0.218 1.218 16 H -0.217 1.217 17 C 0.064 3.936 18 C -0.173 4.173 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.170 4.170 22 C -0.063 4.063 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.023 -0.236 -7.310 7.588 hybrid contribution -1.353 0.228 0.918 1.651 sum 0.670 -0.008 -6.392 6.427 Atomic orbital electron populations 1.22437 0.89094 1.01630 0.99848 1.64816 1.07108 1.14546 1.39295 1.22807 0.96309 0.90270 0.99550 1.22430 0.96426 0.98939 0.98844 1.22743 0.96212 0.92900 1.00493 0.91984 1.20945 0.98752 0.86889 0.90602 1.43910 1.08563 1.09579 1.67500 1.18879 1.04147 0.96674 1.16924 0.92335 1.25086 0.99517 0.98650 0.95415 1.70074 1.33694 1.18032 1.31054 0.86595 0.86020 0.78643 0.77848 1.20010 1.21765 1.21697 1.21037 0.88180 0.92041 0.92374 1.22848 0.99962 0.96480 0.98045 1.22442 0.98992 0.98320 0.96354 1.22250 1.00146 0.97706 0.95405 1.22544 0.99655 0.93640 1.01162 1.23085 0.94925 0.99493 0.88830 0.95807 0.92279 0.91664 0.94654 0.91497 0.91707 0.92128 0.95876 0.88974 0.93943 0.93635 0.90895 0.93573 0.92793 0.93039 0.93574 0.92063 0.94281 0.89644 0.90189 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.42 60.07 0.57 0.86 16 2 N -0.53 -9.46 5.56 -238.57 -1.33 -10.78 16 3 C 0.04 0.62 6.71 -2.66 -0.02 0.60 16 4 C -0.13 -2.13 6.51 -25.37 -0.17 -2.30 16 5 C -0.10 -1.98 3.30 -88.76 -0.29 -2.27 16 6 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 7 C 0.15 3.44 4.70 -4.04 -0.02 3.42 16 8 N -0.58 -13.25 2.32 -164.39 -0.38 -13.63 16 9 C -0.24 -5.93 6.77 -15.06 -0.10 -6.03 16 10 H 0.06 1.52 6.93 -52.49 -0.36 1.16 16 11 C 0.01 0.34 4.97 -17.43 -0.09 0.25 16 12 N -0.89 -24.36 11.48 55.49 0.64 -23.73 16 13 Si 0.88 20.99 29.60 -169.99 -5.03 15.96 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 C 0.17 3.49 3.42 -66.81 -0.23 3.26 16 18 C -0.13 -2.46 6.43 -25.02 -0.16 -2.62 16 19 C -0.12 -1.98 6.91 -24.69 -0.17 -2.15 16 20 C -0.12 -2.03 6.83 -25.07 -0.17 -2.20 16 21 C -0.13 -2.61 6.24 -25.61 -0.16 -2.77 16 22 C 0.06 1.28 4.96 -1.89 -0.01 1.27 16 23 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.04 0.55 7.70 -51.93 -0.40 0.15 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 1.10 7.86 -51.93 -0.41 0.69 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.02 0.50 7.90 -51.93 -0.41 0.09 16 31 H 0.09 2.33 5.52 -51.93 -0.29 2.05 16 32 H 0.25 6.76 8.32 -40.82 -0.34 6.42 16 33 H 0.05 0.90 7.81 -51.93 -0.41 0.50 16 34 H 0.07 1.49 6.64 -51.93 -0.34 1.14 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 2.03 7.17 -51.93 -0.37 1.65 16 42 H 0.08 1.72 8.11 -51.93 -0.42 1.30 16 43 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -26.16 326.84 -10.22 -36.38 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.02 Total: 1.56 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -1.02 Total: -10.68 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -1.07 Total: -48.14 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.16 -10.22 -36.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687797927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.936 kcal (2) G-P(sol) polarization free energy of solvation -26.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds