Wall clock time and date at job start Mon Mar 30 2020 04:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48059 * 111.16117 * 2 1 4 4 C 1.53999 * 107.13910 * 145.63407 * 3 2 1 5 5 C 1.54593 * 105.13972 * 358.91728 * 4 3 2 6 6 H 1.09002 * 110.72442 * 96.40052 * 5 4 3 7 7 C 1.53002 * 110.87865 * 219.61172 * 5 4 3 8 8 N 1.46500 * 109.47292 * 180.02562 * 7 5 4 9 9 C 1.36930 * 120.00154 * 270.00317 * 8 7 5 10 10 H 1.08001 * 120.00230 * 141.33446 * 9 8 7 11 11 C 1.38811 * 120.00166 * 321.32923 * 9 8 7 12 12 N 1.31623 * 120.00019 * 339.61734 * 11 9 8 13 13 Si 1.86803 * 120.00124 * 159.61678 * 11 9 8 14 14 H 1.48499 * 109.47054 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46920 * 120.00259 * 13 11 9 16 16 H 1.48500 * 109.46848 * 240.00035 * 13 11 9 17 17 C 1.46498 * 119.99716 * 90.00345 * 8 7 5 18 18 C 1.54271 * 110.03004 * 242.53136 * 17 8 7 19 19 C 1.54973 * 104.15807 * 217.13405 * 18 17 8 20 20 C 1.54891 * 102.77392 * 37.89064 * 19 18 17 21 21 C 1.53869 * 110.03196 * 125.31270 * 17 8 7 22 22 C 1.48537 * 110.99767 * 117.39796 * 2 1 3 23 23 H 1.09005 * 109.47207 * 302.60156 * 1 2 3 24 24 H 1.08999 * 109.47155 * 62.60048 * 1 2 3 25 25 H 1.09002 * 109.47401 * 182.60030 * 1 2 3 26 26 H 1.08999 * 109.75985 * 26.32141 * 3 2 1 27 27 H 1.08999 * 110.16377 * 265.17163 * 3 2 1 28 28 H 1.09004 * 110.31030 * 239.99960 * 4 3 2 29 29 H 1.09004 * 110.38996 * 117.87382 * 4 3 2 30 30 H 1.08997 * 109.47191 * 300.04385 * 7 5 4 31 31 H 1.09004 * 109.46763 * 60.04618 * 7 5 4 32 32 H 0.96998 * 119.99896 * 175.03506 * 12 11 9 33 33 H 1.09003 * 110.01624 * 3.91868 * 17 8 7 34 34 H 1.08990 * 110.48549 * 335.78126 * 18 17 8 35 35 H 1.09003 * 110.48364 * 98.42980 * 18 17 8 36 36 H 1.08997 * 110.72149 * 279.57453 * 19 18 17 37 37 H 1.08999 * 110.91998 * 156.29278 * 19 18 17 38 38 H 1.09003 * 110.48609 * 203.40677 * 20 19 18 39 39 H 1.08992 * 110.59997 * 80.81733 * 20 19 18 40 40 H 1.08998 * 110.03341 * 238.56579 * 21 17 8 41 41 H 1.08997 * 110.03463 * 359.95240 * 21 17 8 42 42 H 1.09000 * 110.66179 * 81.84606 * 22 2 1 43 43 H 1.08995 * 110.66747 * 318.87761 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0035 1.3808 0.0000 4 6 3.3001 1.3655 0.8307 5 6 3.4490 -0.0934 1.3199 6 1 4.1133 -0.6547 0.6628 7 6 3.9558 -0.1356 2.7630 8 7 4.0860 -1.5296 3.1943 9 6 3.0283 -2.1639 3.7892 10 1 2.8249 -3.2006 3.5652 11 6 2.2174 -1.4744 4.6803 12 7 2.6609 -0.3805 5.2627 13 14 0.4968 -2.0990 5.0528 14 1 0.2408 -3.3381 4.2754 15 1 0.3801 -2.3925 6.5038 16 1 -0.4982 -1.0631 4.6758 17 6 5.3479 -2.2449 2.9893 18 6 5.1280 -3.4441 2.0440 19 6 6.0507 -4.5507 2.6145 20 6 5.9165 -4.3532 4.1449 21 6 5.8494 -2.8224 4.3244 22 6 2.0013 -0.6381 1.2312 23 1 -0.3634 0.5537 0.8658 24 1 -0.3633 0.4729 -0.9124 25 1 -0.3634 -1.0266 0.0466 26 1 1.2791 2.0563 0.4549 27 1 2.2194 1.7000 -1.0196 28 1 3.2130 2.0425 1.6805 29 1 4.1518 1.6453 0.2105 30 1 4.9272 0.3553 2.8214 31 1 3.2481 0.3806 3.4118 32 1 2.0707 0.1408 5.8290 33 1 6.0949 -1.5709 2.5698 34 1 4.0866 -3.7647 2.0705 35 1 5.4233 -3.1871 1.0267 36 1 7.0811 -4.3969 2.2940 37 1 5.6998 -5.5399 2.3205 38 1 6.7870 -4.7598 4.6598 39 1 5.0036 -4.8208 4.5134 40 1 6.8402 -2.4295 4.5525 41 1 5.1544 -2.5697 5.1251 42 1 2.0040 -1.7235 1.1314 43 1 1.4219 -0.3346 2.1031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687797927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:45 Heat of formation + Delta-G solvation = -3.423857 kcal Electronic energy + Delta-G solvation = -20274.601972 eV Core-core repulsion = 17546.839198 eV Total energy + Delta-G solvation = -2727.762774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.07463 -38.98293 -36.08251 -33.68170 -32.42916 -30.00552 -29.27238 -28.10934 -27.73990 -25.84097 -23.59976 -21.80852 -21.39773 -20.84630 -20.62465 -18.20400 -17.01770 -16.93547 -16.35468 -16.15258 -15.94393 -15.20480 -14.87352 -14.61446 -14.53061 -14.02314 -13.95529 -13.45828 -13.10035 -12.95409 -12.85210 -12.69197 -12.31576 -12.30290 -12.16561 -11.98400 -11.94055 -11.73584 -11.69626 -11.52936 -11.42241 -11.21244 -11.15637 -11.04464 -10.39314 -9.37469 -8.44537 -7.69077 -5.35653 1.37565 1.44429 1.50772 2.52627 3.15808 3.34086 3.61865 3.89982 4.00389 4.03612 4.07535 4.19796 4.35249 4.44491 4.51692 4.57329 4.70822 4.74041 4.81070 4.85319 4.91340 4.95793 4.96538 4.98831 5.03472 5.11204 5.14782 5.17348 5.26230 5.27260 5.35150 5.39611 5.44626 5.62870 5.66722 5.72897 5.81748 5.92772 5.99751 6.16608 6.57472 7.28321 7.99212 8.51707 9.20969 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.009449 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.338888 B = 2962.493546 C = 3846.282624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.537 5.537 3 C 0.039 3.961 4 C -0.123 4.123 5 C -0.094 4.094 6 H 0.063 0.937 7 C 0.159 3.841 8 N -0.588 5.588 9 C -0.217 4.217 10 H 0.049 0.951 11 C -0.028 4.028 12 N -0.915 5.915 13 Si 0.923 3.077 14 H -0.269 1.269 15 H -0.297 1.297 16 H -0.295 1.295 17 C 0.162 3.838 18 C -0.127 4.127 19 C -0.112 4.112 20 C -0.113 4.113 21 C -0.128 4.128 22 C 0.074 3.926 23 H 0.015 0.985 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.024 0.976 31 H 0.061 0.939 32 H 0.244 0.756 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.039 0.961 42 H 0.060 0.940 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 -0.481 -9.077 9.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.261 5.261 3 C -0.088 4.088 4 C -0.161 4.161 5 C -0.115 4.115 6 H 0.082 0.918 7 C 0.032 3.968 8 N -0.307 5.307 9 C -0.348 4.348 10 H 0.066 0.934 11 C -0.225 4.225 12 N -0.560 5.560 13 Si 0.753 3.247 14 H -0.194 1.194 15 H -0.224 1.224 16 H -0.222 1.222 17 C 0.055 3.945 18 C -0.167 4.167 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.167 4.167 22 C -0.053 4.053 23 H 0.033 0.967 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.112 0.888 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 2.963 -0.694 -9.377 9.858 hybrid contribution -1.595 0.367 1.523 2.236 sum 1.368 -0.327 -7.854 7.979 Atomic orbital electron populations 1.22516 0.87789 1.01913 1.00894 1.64817 1.08450 1.15627 1.37215 1.22898 0.95741 0.89276 1.00923 1.22412 0.98014 0.96582 0.99132 1.22534 0.95478 0.95026 0.98480 0.91811 1.20816 0.97949 0.86228 0.91767 1.44075 1.09221 1.09894 1.67526 1.18849 1.04383 0.96065 1.15550 0.93389 1.25505 1.01778 0.99170 0.96050 1.70174 1.34207 1.19227 1.32413 0.85892 0.83482 0.78204 0.77142 1.19368 1.22412 1.22182 1.21266 0.87175 0.92812 0.93216 1.22718 0.99190 0.96344 0.98397 1.22406 0.99721 0.98156 0.94659 1.22212 1.00549 0.95357 0.96975 1.22455 0.99056 0.95982 0.99257 1.22794 0.95228 0.98454 0.88826 0.96677 0.89385 0.91721 0.94293 0.88840 0.92421 0.89647 0.95792 0.92142 0.94616 0.92827 0.93428 0.92168 0.90404 0.91357 0.91010 0.93696 0.92890 0.94167 0.92175 0.96690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.42 127.69 1.20 1.73 16 2 N -0.54 -18.24 5.56 -908.70 -5.05 -23.29 16 3 C 0.04 1.17 6.71 86.42 0.58 1.75 16 4 C -0.12 -3.90 6.51 31.47 0.20 -3.69 16 5 C -0.09 -3.60 3.30 -9.59 -0.03 -3.63 16 6 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 7 C 0.16 7.17 4.70 86.38 0.41 7.58 16 8 N -0.59 -27.50 2.32 -674.02 -1.57 -29.06 16 9 C -0.22 -11.23 6.77 84.03 0.57 -10.67 16 10 H 0.05 2.57 6.93 -2.91 -0.02 2.55 16 11 C -0.03 -1.53 4.97 84.86 0.42 -1.11 16 12 N -0.91 -52.34 11.48 21.65 0.25 -52.10 16 13 Si 0.92 44.45 29.60 68.60 2.03 46.48 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 16 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 17 C 0.16 6.50 3.42 45.72 0.16 6.66 16 18 C -0.13 -4.48 6.43 31.70 0.20 -4.27 16 19 C -0.11 -3.24 6.91 31.92 0.22 -3.02 16 20 C -0.11 -3.71 6.83 31.67 0.22 -3.50 16 21 C -0.13 -5.06 6.24 31.32 0.20 -4.87 16 22 C 0.07 3.02 4.96 86.65 0.43 3.45 16 23 H 0.01 0.47 8.00 -2.38 -0.02 0.45 16 24 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.13 7.70 -2.39 -0.02 1.11 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.06 1.91 7.86 -2.39 -0.02 1.89 16 29 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.02 1.04 7.90 -2.39 -0.02 1.03 16 31 H 0.06 3.18 5.52 -2.39 -0.01 3.17 16 32 H 0.24 13.76 8.32 -92.71 -0.77 12.98 16 33 H 0.05 2.05 7.81 -2.39 -0.02 2.03 16 34 H 0.05 1.92 6.64 -2.39 -0.02 1.90 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.95 7.17 -2.39 -0.02 1.93 16 42 H 0.06 2.64 8.11 -2.39 -0.02 2.62 16 43 H 0.01 0.70 7.87 -2.39 -0.02 0.68 16 Total: -1.00 -57.75 326.84 1.38 -56.37 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.94 Total: 15.18 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 4.77 Total: -13.59 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -6.36 Total: -104.44 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -57.75 1.38 -56.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687797927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.946 kcal (2) G-P(sol) polarization free energy of solvation -57.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds