Wall clock time and date at job start Mon Mar 30 2020 04:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47858 * 111.00140 * 2 1 4 4 C 1.55113 * 104.90605 * 146.23777 * 3 2 1 5 5 C 1.55140 * 101.55860 * 323.16006 * 4 3 2 6 6 H 1.09006 * 110.70217 * 276.96632 * 5 4 3 7 7 C 1.52999 * 110.70615 * 153.90907 * 5 4 3 8 8 N 1.46497 * 109.47240 * 177.40337 * 7 5 4 9 9 C 1.36934 * 120.00143 * 89.99701 * 8 7 5 10 10 H 1.08006 * 119.99610 * 219.88501 * 9 8 7 11 11 C 1.38806 * 120.00095 * 39.89248 * 9 8 7 12 12 N 1.31614 * 120.00061 * 26.31646 * 11 9 8 13 13 Si 1.86800 * 119.99832 * 206.32413 * 11 9 8 14 14 H 1.48506 * 109.47104 * 269.99135 * 13 11 9 15 15 H 1.48505 * 109.47247 * 149.99701 * 13 11 9 16 16 H 1.48498 * 109.47221 * 29.99780 * 13 11 9 17 17 C 1.46505 * 119.99865 * 269.99790 * 8 7 5 18 18 C 1.54266 * 110.03175 * 241.95624 * 17 8 7 19 19 C 1.54969 * 104.15914 * 217.13479 * 18 17 8 20 20 C 1.54882 * 102.77676 * 37.88689 * 19 18 17 21 21 C 1.53868 * 110.03472 * 124.73601 * 17 8 7 22 22 C 1.47447 * 110.99963 * 120.83719 * 2 1 3 23 23 H 1.08999 * 109.47022 * 299.16049 * 1 2 3 24 24 H 1.09004 * 109.46588 * 59.15966 * 1 2 3 25 25 H 1.09000 * 109.47222 * 179.15691 * 1 2 3 26 26 H 1.09004 * 110.36736 * 265.19119 * 3 2 1 27 27 H 1.08999 * 110.37066 * 27.42094 * 3 2 1 28 28 H 1.08994 * 111.14448 * 205.04642 * 4 3 2 29 29 H 1.09001 * 110.92188 * 81.16991 * 4 3 2 30 30 H 1.08999 * 109.47011 * 57.39895 * 7 5 4 31 31 H 1.09003 * 109.46796 * 297.40227 * 7 5 4 32 32 H 0.96998 * 120.00394 * 5.19208 * 12 11 9 33 33 H 1.09000 * 110.01553 * 3.34616 * 17 8 7 34 34 H 1.08993 * 110.48823 * 335.78119 * 18 17 8 35 35 H 1.09001 * 110.48525 * 98.42643 * 18 17 8 36 36 H 1.09004 * 110.71926 * 279.57546 * 19 18 17 37 37 H 1.09001 * 110.92334 * 156.29718 * 19 18 17 38 38 H 1.08997 * 110.48948 * 203.40748 * 20 19 18 39 39 H 1.09001 * 110.60075 * 80.81474 * 20 19 18 40 40 H 1.08997 * 110.03607 * 238.57437 * 21 17 8 41 41 H 1.09005 * 110.03343 * 0.02562 * 21 17 8 42 42 H 1.09003 * 109.88453 * 117.33720 * 22 2 1 43 43 H 1.08996 * 110.02494 * 356.23018 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3804 0.0000 4 6 3.3052 1.3063 0.8330 5 6 2.9158 0.2823 1.9315 6 1 2.3751 0.7726 2.7411 7 6 4.1569 -0.4337 2.4681 8 7 3.7664 -1.3474 3.5446 9 6 3.4265 -2.6418 3.2544 10 1 2.6017 -3.1119 3.7695 11 6 4.1419 -3.3496 2.2984 12 7 5.3947 -3.0343 2.0471 13 14 3.3264 -4.7495 1.3685 14 1 3.5345 -6.0213 2.1064 15 1 3.9254 -4.8593 0.0141 16 1 1.8711 -4.4807 1.2458 17 6 3.7394 -0.8763 4.9316 18 6 4.7484 -1.6765 5.7811 19 6 4.0421 -1.8442 7.1503 20 6 2.5635 -2.0689 6.7478 21 6 2.3509 -1.1253 5.5460 22 6 1.9974 -0.7056 1.1819 23 1 -0.3633 0.5007 0.8974 24 1 -0.3632 0.5269 -0.8824 25 1 -0.3634 -1.0275 -0.0151 26 1 2.2148 1.7038 -1.0183 27 1 1.2881 2.0596 0.4706 28 1 3.5482 2.2746 1.2703 29 1 4.1321 0.9343 0.2280 30 1 4.8623 0.3021 2.8541 31 1 4.6262 -0.9997 1.6634 32 1 5.8414 -2.3587 2.5809 33 1 3.9794 0.1863 4.9694 34 1 4.9402 -2.6497 5.3293 35 1 5.6775 -1.1183 5.8960 36 1 4.1459 -0.9405 7.7509 37 1 4.4324 -2.7094 7.6862 38 1 1.8993 -1.7974 7.5682 39 1 2.3997 -3.1054 6.4525 40 1 1.9173 -0.1837 5.8827 41 1 1.6971 -1.5970 4.8124 42 1 2.5697 -1.5784 0.8675 43 1 1.1771 -1.0141 1.8301 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687797928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:49 Heat of formation + Delta-G solvation = 8.742543 kcal Electronic energy + Delta-G solvation = -20292.385462 eV Core-core repulsion = 17565.150263 eV Total energy + Delta-G solvation = -2727.235199 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.69158 -37.56430 -34.60480 -32.01006 -30.59393 -28.65261 -27.90522 -26.48364 -25.88012 -24.26552 -21.80225 -20.54104 -19.96975 -19.48327 -19.11542 -16.70664 -15.63648 -15.42702 -14.86762 -14.66630 -13.76292 -13.64750 -13.54223 -13.06994 -12.93232 -12.70305 -12.35376 -12.22983 -11.81813 -11.38761 -11.16201 -10.90232 -10.74416 -10.58532 -10.56866 -10.45630 -10.32571 -10.09474 -10.07168 -9.93453 -9.91925 -9.91600 -9.72962 -9.15689 -8.25292 -7.82827 -6.67733 -5.95169 -3.30503 3.51362 3.57712 3.71284 4.51730 4.61234 5.08252 5.20319 5.33610 5.39886 5.41503 5.45457 5.51431 5.66012 5.75484 5.77349 5.86682 6.02053 6.07923 6.10022 6.19794 6.23853 6.25173 6.26606 6.38841 6.43451 6.50289 6.54189 6.55169 6.63218 6.74819 6.76687 6.81561 6.95275 7.13118 7.22355 7.29309 7.34941 7.48342 7.57669 8.24843 8.67480 9.23657 9.90152 10.39489 11.22644 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.009328 C = 0.007325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.776145 B = 3001.112795 C = 3821.769267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.541 5.541 3 C 0.044 3.956 4 C -0.127 4.127 5 C -0.117 4.117 6 H 0.055 0.945 7 C 0.152 3.848 8 N -0.586 5.586 9 C -0.339 4.339 10 H 0.047 0.953 11 C -0.011 4.011 12 N -0.903 5.903 13 Si 1.051 2.949 14 H -0.296 1.296 15 H -0.286 1.286 16 H -0.290 1.290 17 C 0.171 3.829 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.131 4.131 22 C 0.066 3.934 23 H 0.020 0.980 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.078 0.922 32 H 0.270 0.730 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.686 6.986 2.019 9.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.084 4.084 4 C -0.166 4.166 5 C -0.139 4.139 6 H 0.073 0.927 7 C 0.025 3.975 8 N -0.306 5.306 9 C -0.469 4.469 10 H 0.065 0.935 11 C -0.215 4.215 12 N -0.541 5.541 13 Si 0.881 3.119 14 H -0.223 1.223 15 H -0.211 1.211 16 H -0.217 1.217 17 C 0.064 3.936 18 C -0.171 4.171 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.170 4.170 22 C -0.061 4.061 23 H 0.038 0.962 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.316 5.587 0.334 7.720 hybrid contribution -0.678 1.527 2.087 2.673 sum -5.995 7.114 2.421 9.613 Atomic orbital electron populations 1.22466 0.88877 1.01639 0.99495 1.63696 1.06986 1.13722 1.42141 1.23009 0.95885 0.89877 0.99629 1.22776 0.97363 0.98939 0.97487 1.22964 0.99687 0.95283 0.95919 0.92664 1.20912 0.92111 0.91397 0.93082 1.44011 1.79582 1.08201 0.98833 1.19554 1.12504 0.89323 1.25500 0.93503 1.25759 0.94616 1.00764 1.00392 1.70742 1.08712 1.31534 1.43107 0.83763 0.75320 0.75788 0.77057 1.22345 1.21133 1.21656 1.21037 0.92017 0.94638 0.85949 1.22817 0.97467 1.02555 0.94229 1.22421 0.96174 0.99762 0.97678 1.22228 0.95846 1.00157 0.97135 1.22524 0.99885 0.97487 0.97091 1.22770 0.97513 0.97433 0.88389 0.96167 0.92289 0.91641 0.91167 0.94590 0.91893 0.90766 0.95653 0.90373 0.91957 0.93871 0.89956 0.93895 0.92945 0.92873 0.93522 0.91936 0.94153 0.90954 0.89043 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.12 60.06 0.55 0.91 16 2 N -0.54 -9.66 5.45 -239.37 -1.30 -10.96 16 3 C 0.04 0.68 6.73 -2.18 -0.01 0.67 16 4 C -0.13 -2.09 6.54 -24.48 -0.16 -2.25 16 5 C -0.12 -2.24 3.17 -88.80 -0.28 -2.52 16 6 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 7 C 0.15 3.33 4.26 -4.04 -0.02 3.31 16 8 N -0.59 -13.45 2.07 -164.39 -0.34 -13.79 16 9 C -0.34 -8.64 6.53 -15.06 -0.10 -8.74 16 10 H 0.05 1.26 6.99 -52.48 -0.37 0.89 16 11 C -0.01 -0.30 4.29 -17.43 -0.07 -0.37 16 12 N -0.90 -25.73 12.34 55.49 0.68 -25.04 16 13 Si 1.05 24.91 29.98 -169.99 -5.10 19.81 16 14 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.17 3.49 3.41 -66.81 -0.23 3.26 16 18 C -0.13 -2.61 6.43 -25.03 -0.16 -2.77 16 19 C -0.12 -2.04 6.91 -24.70 -0.17 -2.21 16 20 C -0.12 -1.98 6.83 -25.07 -0.17 -2.15 16 21 C -0.13 -2.45 6.16 -25.61 -0.16 -2.61 16 22 C 0.07 1.33 5.71 -2.84 -0.02 1.31 16 23 H 0.02 0.29 8.10 -51.93 -0.42 -0.13 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.52 7.78 -51.93 -0.40 0.12 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 30 H 0.03 0.53 7.96 -51.93 -0.41 0.12 16 31 H 0.08 1.96 5.64 -51.93 -0.29 1.67 16 32 H 0.27 7.77 7.39 -40.82 -0.30 7.47 16 33 H 0.04 0.85 7.86 -51.93 -0.41 0.44 16 34 H 0.08 1.93 7.20 -51.93 -0.37 1.56 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.52 6.71 -51.93 -0.35 1.17 16 42 H 0.09 2.17 6.80 -51.93 -0.35 1.82 16 43 H 0.05 0.99 7.59 -51.93 -0.39 0.60 16 LS Contribution 324.88 15.07 4.90 4.90 Total: -1.00 -26.79 324.88 -10.11 -36.89 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.94 Total: 2.35 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -1.00 Total: -14.16 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.96 Total: -49.80 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.10 Total: 19.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.79 -10.11 -36.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687797928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.636 kcal (2) G-P(sol) polarization free energy of solvation -26.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds