Wall clock time and date at job start Mon Mar 30 2020 04:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47858 * 111.00140 * 2 1 4 4 C 1.55113 * 104.90605 * 146.23777 * 3 2 1 5 5 C 1.55140 * 101.55860 * 323.16006 * 4 3 2 6 6 H 1.09006 * 110.70217 * 276.96632 * 5 4 3 7 7 C 1.52999 * 110.70615 * 153.90907 * 5 4 3 8 8 N 1.46497 * 109.47240 * 177.40337 * 7 5 4 9 9 C 1.36934 * 120.00143 * 89.99701 * 8 7 5 10 10 H 1.08006 * 119.99610 * 219.88501 * 9 8 7 11 11 C 1.38806 * 120.00095 * 39.89248 * 9 8 7 12 12 N 1.31614 * 120.00061 * 26.31646 * 11 9 8 13 13 Si 1.86800 * 119.99832 * 206.32413 * 11 9 8 14 14 H 1.48506 * 109.47104 * 269.99135 * 13 11 9 15 15 H 1.48505 * 109.47247 * 149.99701 * 13 11 9 16 16 H 1.48498 * 109.47221 * 29.99780 * 13 11 9 17 17 C 1.46505 * 119.99865 * 269.99790 * 8 7 5 18 18 C 1.54266 * 110.03175 * 241.95624 * 17 8 7 19 19 C 1.54969 * 104.15914 * 217.13479 * 18 17 8 20 20 C 1.54882 * 102.77676 * 37.88689 * 19 18 17 21 21 C 1.53868 * 110.03472 * 124.73601 * 17 8 7 22 22 C 1.47447 * 110.99963 * 120.83719 * 2 1 3 23 23 H 1.08999 * 109.47022 * 299.16049 * 1 2 3 24 24 H 1.09004 * 109.46588 * 59.15966 * 1 2 3 25 25 H 1.09000 * 109.47222 * 179.15691 * 1 2 3 26 26 H 1.09004 * 110.36736 * 265.19119 * 3 2 1 27 27 H 1.08999 * 110.37066 * 27.42094 * 3 2 1 28 28 H 1.08994 * 111.14448 * 205.04642 * 4 3 2 29 29 H 1.09001 * 110.92188 * 81.16991 * 4 3 2 30 30 H 1.08999 * 109.47011 * 57.39895 * 7 5 4 31 31 H 1.09003 * 109.46796 * 297.40227 * 7 5 4 32 32 H 0.96998 * 120.00394 * 5.19208 * 12 11 9 33 33 H 1.09000 * 110.01553 * 3.34616 * 17 8 7 34 34 H 1.08993 * 110.48823 * 335.78119 * 18 17 8 35 35 H 1.09001 * 110.48525 * 98.42643 * 18 17 8 36 36 H 1.09004 * 110.71926 * 279.57546 * 19 18 17 37 37 H 1.09001 * 110.92334 * 156.29718 * 19 18 17 38 38 H 1.08997 * 110.48948 * 203.40748 * 20 19 18 39 39 H 1.09001 * 110.60075 * 80.81474 * 20 19 18 40 40 H 1.08997 * 110.03607 * 238.57437 * 21 17 8 41 41 H 1.09005 * 110.03343 * 0.02562 * 21 17 8 42 42 H 1.09003 * 109.88453 * 117.33720 * 22 2 1 43 43 H 1.08996 * 110.02494 * 356.23018 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3804 0.0000 4 6 3.3052 1.3063 0.8330 5 6 2.9158 0.2823 1.9315 6 1 2.3751 0.7726 2.7411 7 6 4.1569 -0.4337 2.4681 8 7 3.7664 -1.3474 3.5446 9 6 3.4265 -2.6418 3.2544 10 1 2.6017 -3.1119 3.7695 11 6 4.1419 -3.3496 2.2984 12 7 5.3947 -3.0343 2.0471 13 14 3.3264 -4.7495 1.3685 14 1 3.5345 -6.0213 2.1064 15 1 3.9254 -4.8593 0.0141 16 1 1.8711 -4.4807 1.2458 17 6 3.7394 -0.8763 4.9316 18 6 4.7484 -1.6765 5.7811 19 6 4.0421 -1.8442 7.1503 20 6 2.5635 -2.0689 6.7478 21 6 2.3509 -1.1253 5.5460 22 6 1.9974 -0.7056 1.1819 23 1 -0.3633 0.5007 0.8974 24 1 -0.3632 0.5269 -0.8824 25 1 -0.3634 -1.0275 -0.0151 26 1 2.2148 1.7038 -1.0183 27 1 1.2881 2.0596 0.4706 28 1 3.5482 2.2746 1.2703 29 1 4.1321 0.9343 0.2280 30 1 4.8623 0.3021 2.8541 31 1 4.6262 -0.9997 1.6634 32 1 5.8414 -2.3587 2.5809 33 1 3.9794 0.1863 4.9694 34 1 4.9402 -2.6497 5.3293 35 1 5.6775 -1.1183 5.8960 36 1 4.1459 -0.9405 7.7509 37 1 4.4324 -2.7094 7.6862 38 1 1.8993 -1.7974 7.5682 39 1 2.3997 -3.1054 6.4525 40 1 1.9173 -0.1837 5.8827 41 1 1.6971 -1.5970 4.8124 42 1 2.5697 -1.5784 0.8675 43 1 1.1771 -1.0141 1.8301 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687797928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:48 Heat of formation + Delta-G solvation = -5.899525 kcal Electronic energy + Delta-G solvation = -20293.020390 eV Core-core repulsion = 17565.150263 eV Total energy + Delta-G solvation = -2727.870127 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21793 -39.10485 -36.31151 -33.67576 -32.31907 -30.10278 -29.42926 -28.04250 -27.59408 -25.84212 -23.55979 -21.89169 -21.43755 -21.06016 -20.85840 -18.58640 -17.13538 -17.03483 -16.33416 -16.20656 -15.52704 -15.28841 -15.05142 -14.61254 -14.50416 -14.18843 -13.92066 -13.82414 -13.38584 -12.91163 -12.66211 -12.45213 -12.34428 -12.16130 -12.13471 -11.96171 -11.88298 -11.80351 -11.73607 -11.61086 -11.48721 -11.39343 -11.37578 -11.02249 -10.28315 -9.21894 -8.66146 -7.99363 -5.36450 1.55238 1.62816 1.78070 2.66898 3.17017 3.30633 3.51125 3.85137 3.91356 3.92432 3.97240 4.06395 4.25715 4.44290 4.48699 4.53315 4.61526 4.62890 4.69197 4.74892 4.80771 4.85904 4.88604 4.91108 4.92446 4.94277 5.06938 5.11361 5.16439 5.20412 5.22777 5.25102 5.42426 5.49455 5.60466 5.61123 5.64439 6.06879 6.14502 6.22857 6.55845 7.29203 7.93191 8.40762 9.11502 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.009328 C = 0.007325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.776145 B = 3001.112795 C = 3821.769267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.559 5.559 3 C 0.048 3.952 4 C -0.121 4.121 5 C -0.109 4.109 6 H 0.059 0.941 7 C 0.157 3.843 8 N -0.597 5.597 9 C -0.315 4.315 10 H 0.032 0.968 11 C -0.054 4.054 12 N -0.932 5.932 13 Si 1.085 2.915 14 H -0.288 1.288 15 H -0.294 1.294 16 H -0.279 1.279 17 C 0.162 3.838 18 C -0.130 4.130 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.124 4.124 22 C 0.077 3.923 23 H 0.026 0.974 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.255 0.745 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.049 0.951 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 8.896 2.930 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.283 5.283 3 C -0.080 4.080 4 C -0.159 4.159 5 C -0.131 4.131 6 H 0.078 0.922 7 C 0.030 3.970 8 N -0.318 5.318 9 C -0.446 4.446 10 H 0.050 0.950 11 C -0.253 4.253 12 N -0.573 5.573 13 Si 0.912 3.088 14 H -0.215 1.215 15 H -0.221 1.221 16 H -0.205 1.205 17 C 0.056 3.944 18 C -0.169 4.169 19 C -0.149 4.149 20 C -0.150 4.150 21 C -0.163 4.163 22 C -0.050 4.050 23 H 0.044 0.956 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.824 7.512 1.261 10.227 hybrid contribution -0.238 0.992 1.831 2.096 sum -7.062 8.504 3.092 11.479 Atomic orbital electron populations 1.22511 0.87003 1.01862 1.00980 1.63617 1.08877 1.15212 1.40632 1.23077 0.95386 0.88811 1.00683 1.22754 0.97623 0.99111 0.96433 1.22775 0.98003 0.95571 0.96705 0.92216 1.20792 0.93352 0.90950 0.91869 1.44159 1.79545 1.07664 1.00417 1.19470 1.10786 0.90140 1.24192 0.95012 1.26573 0.94557 1.02464 1.01738 1.70839 1.09729 1.32689 1.44041 0.83279 0.75196 0.74464 0.75829 1.21494 1.22064 1.20512 1.21265 0.93358 0.95257 0.84564 1.22714 0.98085 0.99988 0.96152 1.22383 0.95109 1.01531 0.95880 1.22209 0.96846 0.98633 0.97335 1.22419 0.98028 0.98836 0.97018 1.22439 0.96729 0.96757 0.89116 0.95557 0.89707 0.92257 0.89393 0.92654 0.89204 0.92099 0.95049 0.93909 0.93459 0.92665 0.94392 0.93422 0.90171 0.91944 0.90331 0.93875 0.91719 0.93756 0.93299 0.94825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.12 127.69 1.16 1.86 16 2 N -0.56 -19.22 5.45 -911.22 -4.96 -24.18 16 3 C 0.05 1.35 6.73 86.84 0.58 1.94 16 4 C -0.12 -3.75 6.54 32.05 0.21 -3.54 16 5 C -0.11 -4.12 3.17 -9.61 -0.03 -4.16 16 6 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 7 C 0.16 7.02 4.26 86.38 0.37 7.38 16 8 N -0.60 -27.99 2.07 -674.02 -1.40 -29.38 16 9 C -0.32 -16.62 6.53 84.03 0.55 -16.07 16 10 H 0.03 1.77 6.99 -2.91 -0.02 1.75 16 11 C -0.05 -3.02 4.29 84.86 0.36 -2.65 16 12 N -0.93 -55.55 12.34 21.65 0.27 -55.28 16 13 Si 1.08 52.08 29.98 68.60 2.06 54.14 16 14 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 C 0.16 6.51 3.41 45.71 0.16 6.66 16 18 C -0.13 -5.13 6.43 31.70 0.20 -4.92 16 19 C -0.11 -3.44 6.91 31.91 0.22 -3.22 16 20 C -0.11 -3.59 6.83 31.67 0.22 -3.38 16 21 C -0.12 -4.45 6.16 31.32 0.19 -4.26 16 22 C 0.08 3.16 5.71 86.64 0.49 3.65 16 23 H 0.03 0.70 8.10 -2.39 -0.02 0.68 16 24 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.06 1.38 7.78 -2.39 -0.02 1.36 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 2.06 8.05 -2.39 -0.02 2.04 16 30 H 0.03 1.33 7.96 -2.39 -0.02 1.31 16 31 H 0.04 2.25 5.64 -2.39 -0.01 2.24 16 32 H 0.26 15.51 7.39 -92.71 -0.69 14.82 16 33 H 0.06 2.08 7.86 -2.39 -0.02 2.06 16 34 H 0.04 1.83 7.20 -2.39 -0.02 1.81 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.04 1.84 6.71 -2.38 -0.02 1.82 16 42 H 0.05 2.41 6.80 -2.39 -0.02 2.40 16 43 H 0.03 1.42 7.59 -2.39 -0.02 1.40 16 Total: -1.00 -60.35 324.88 1.68 -58.67 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 1.03 Total: 16.75 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 4.69 Total: -20.71 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -6.09 Total: -108.84 kcal Atomic # 14 Polarization: 52.08 SS G_CDS: 2.06 Total: 54.14 kcal Total: -60.35 1.68 -58.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687797928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.770 kcal (2) G-P(sol) polarization free energy of solvation -60.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds