Wall clock time and date at job start Mon Mar 30 2020 03:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48525 * 110.99989 * 2 1 4 4 C 1.54945 * 103.22471 * 159.71744 * 3 2 1 5 5 C 1.54586 * 102.92392 * 322.58418 * 4 3 2 6 6 C 1.47903 * 110.99637 * 117.39704 * 2 1 3 7 7 H 1.09003 * 110.08442 * 333.59635 * 6 2 1 8 8 C 1.52996 * 109.91978 * 94.80258 * 6 2 1 9 9 C 1.53004 * 109.47214 * 292.15143 * 8 6 2 10 10 N 1.46897 * 109.46984 * 185.78755 * 9 8 6 11 11 C 1.46902 * 110.99770 * 170.00041 * 10 9 8 12 12 C 1.50699 * 109.47154 * 285.17337 * 11 10 9 13 13 H 1.07997 * 120.00287 * 4.98447 * 12 11 10 14 14 C 1.37881 * 120.00102 * 184.98932 * 12 11 10 15 15 N 1.31508 * 120.00055 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99876 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46946 * 90.00104 * 16 14 12 18 18 H 1.48492 * 109.47311 * 210.00090 * 16 14 12 19 19 H 1.48503 * 109.47165 * 330.00325 * 16 14 12 20 20 C 1.46900 * 110.99947 * 293.94852 * 10 9 8 21 21 C 1.52997 * 117.50162 * 248.08658 * 20 10 9 22 22 C 1.52995 * 117.49898 * 179.46042 * 20 10 9 23 23 H 1.08998 * 109.47568 * 307.69219 * 1 2 3 24 24 H 1.09003 * 109.47072 * 67.68679 * 1 2 3 25 25 H 1.09001 * 109.47337 * 187.68849 * 1 2 3 26 26 H 1.09000 * 110.67213 * 41.28662 * 3 2 1 27 27 H 1.09005 * 110.81256 * 278.21671 * 3 2 1 28 28 H 1.09000 * 110.72323 * 204.22181 * 4 3 2 29 29 H 1.09004 * 110.72161 * 80.94637 * 4 3 2 30 30 H 1.09006 * 110.31086 * 263.04153 * 5 4 3 31 31 H 1.08997 * 110.39396 * 140.91513 * 5 4 3 32 32 H 1.09001 * 109.47071 * 52.15210 * 8 6 2 33 33 H 1.09007 * 109.47069 * 172.15293 * 8 6 2 34 34 H 1.09002 * 109.46971 * 305.78577 * 9 8 6 35 35 H 1.08993 * 109.46760 * 65.78203 * 9 8 6 36 36 H 1.09008 * 109.47281 * 45.16965 * 11 10 9 37 37 H 1.09001 * 109.47388 * 165.16847 * 11 10 9 38 38 H 0.97005 * 120.00079 * 179.97438 * 15 14 12 39 39 H 1.09002 * 115.54828 * 33.79924 * 20 10 9 40 40 H 1.08993 * 117.49846 * 359.97438 * 21 20 10 41 41 H 1.08999 * 117.49906 * 145.02657 * 21 20 10 42 42 H 1.09003 * 117.50174 * 214.98520 * 22 20 10 43 43 H 1.09005 * 117.50200 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4491 1.2105 0.5229 5 6 3.2982 0.1053 1.5931 6 6 1.9989 -0.6354 1.2259 7 1 1.2770 -0.5432 2.0374 8 6 2.2981 -2.1121 0.9601 9 6 0.9862 -2.8649 0.7298 10 7 1.2610 -4.3031 0.6124 11 6 0.0145 -5.0803 0.6281 12 6 -0.5299 -5.1282 2.0325 13 1 -0.0478 -4.5653 2.8181 14 6 -1.6433 -5.8910 2.3147 15 7 -2.1181 -5.9332 3.5404 16 14 -2.4775 -6.8643 0.9559 17 1 -1.8756 -8.2196 0.8768 18 1 -3.9279 -6.9833 1.2510 19 1 -2.2918 -6.1638 -0.3403 20 6 2.0463 -4.5921 -0.5950 21 6 1.3575 -5.3738 -1.7155 22 6 2.4283 -6.0503 -0.8570 23 1 -0.3634 0.6283 0.8132 24 1 -0.3633 0.3902 -0.9507 25 1 -0.3634 -1.0184 0.1375 26 1 1.4237 2.0205 0.6729 27 1 2.0041 1.8004 -1.0085 28 1 3.8123 2.1351 0.9716 29 1 4.1115 0.8835 -0.2786 30 1 3.2135 0.5486 2.5854 31 1 4.1466 -0.5779 1.5559 32 1 2.9285 -2.2015 0.0754 33 1 2.8156 -2.5384 1.8196 34 1 0.3149 -2.6907 1.5708 35 1 0.5189 -2.5080 -0.1880 36 1 -0.7162 -4.6084 -0.0288 37 1 0.2139 -6.0941 0.2809 38 1 -2.9016 -6.4695 3.7388 39 1 2.7638 -3.8242 -0.8841 40 1 0.3219 -5.6740 -1.5566 41 1 1.6217 -5.1202 -2.7421 42 1 3.3969 -6.2417 -1.3189 43 1 2.0965 -6.7953 -0.1338 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687807472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:59 Heat of formation + Delta-G solvation = 37.852789 kcal Electronic energy + Delta-G solvation = -19510.389316 eV Core-core repulsion = 16784.416432 eV Total energy + Delta-G solvation = -2725.972884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.29053 -38.07191 -33.96419 -32.66632 -32.14581 -31.00803 -28.00642 -26.00944 -25.37941 -22.42304 -22.04403 -21.73441 -21.08527 -19.86662 -18.70559 -17.06175 -16.03319 -15.65041 -15.36600 -14.85892 -14.56152 -14.08503 -13.63659 -13.29644 -12.96014 -12.69466 -12.66679 -12.31927 -12.15623 -12.02154 -11.57362 -11.39889 -11.12789 -11.05040 -11.01263 -10.84826 -10.69374 -10.50753 -10.38857 -10.09289 -9.92485 -9.77462 -9.64544 -9.17990 -8.54829 -8.35429 -7.14885 -6.04008 -4.00390 3.28517 3.36101 3.38176 4.06558 4.32488 4.42877 4.60721 4.72405 4.81888 4.98853 5.21830 5.28696 5.40133 5.43166 5.47789 5.52282 5.53428 5.60778 5.64781 5.73335 5.77304 5.84257 5.94283 5.97603 6.06367 6.09127 6.10607 6.22114 6.24241 6.40848 6.50960 6.63692 6.66613 6.73851 6.89168 6.99560 7.01206 7.16325 7.65489 7.95927 8.12675 8.68628 9.05656 9.58318 11.09311 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021988 B = 0.005939 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.114322 B = 4713.533595 C = 5297.787996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.515 5.515 3 C 0.033 3.967 4 C -0.123 4.123 5 C -0.127 4.127 6 C 0.066 3.934 7 H 0.055 0.945 8 C -0.097 4.097 9 C 0.065 3.935 10 N -0.496 5.496 11 C 0.160 3.840 12 C -0.505 4.505 13 H 0.080 0.920 14 C 0.069 3.931 15 N -0.901 5.901 16 Si 0.871 3.129 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.030 3.970 21 C -0.230 4.230 22 C -0.178 4.178 23 H 0.026 0.974 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.031 0.969 36 H -0.011 1.011 37 H 0.028 0.972 38 H 0.263 0.737 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.234 11.922 -8.189 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.239 5.239 3 C -0.095 4.095 4 C -0.161 4.161 5 C -0.165 4.165 6 C -0.043 4.043 7 H 0.073 0.927 8 C -0.135 4.135 9 C -0.062 4.062 10 N -0.217 5.217 11 C 0.034 3.966 12 C -0.544 4.544 13 H 0.098 0.902 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.699 3.301 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.080 4.080 21 C -0.270 4.270 22 C -0.216 4.216 23 H 0.044 0.956 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.007 0.993 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.492 11.417 -8.101 16.913 hybrid contribution -1.443 -0.015 -0.644 1.580 sum 8.049 11.401 -8.745 16.470 Atomic orbital electron populations 1.22714 0.87786 1.03126 1.00523 1.64673 1.08174 1.13846 1.37203 1.23237 0.95114 0.90499 1.00673 1.22460 0.96587 0.98401 0.98616 1.22457 0.98000 0.97592 0.98475 1.22454 0.95587 0.95364 0.90911 0.92698 1.21626 0.98291 0.91735 1.01887 1.22103 0.96408 0.87155 1.00584 1.61846 1.21409 1.06150 1.32295 1.20254 0.85600 0.92877 0.97870 1.21042 1.11087 1.28846 0.93400 0.90243 1.24879 0.96809 0.96411 0.95170 1.69891 1.24148 1.41199 1.18781 0.86920 0.79023 0.81103 0.83088 1.20114 1.21194 1.19314 1.22710 1.00171 0.94210 0.90920 1.23538 0.98912 1.08147 0.96385 1.23015 0.98599 0.97073 1.02927 0.95589 0.91721 0.89921 0.94079 0.90452 0.91456 0.90903 0.91676 0.90700 0.91901 0.90987 0.90246 0.95049 0.99292 0.95445 0.92719 0.87146 0.88480 0.89861 0.89393 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.11 60.06 0.55 0.64 16 2 N -0.51 -6.83 5.07 -230.78 -1.17 -8.00 16 3 C 0.03 0.35 6.56 -1.90 -0.01 0.34 16 4 C -0.12 -1.20 7.06 -24.87 -0.18 -1.38 16 5 C -0.13 -1.42 6.57 -25.38 -0.17 -1.58 16 6 C 0.07 0.89 2.59 -66.64 -0.17 0.72 16 7 H 0.05 0.81 7.78 -51.93 -0.40 0.40 16 8 C -0.10 -1.51 4.55 -26.73 -0.12 -1.63 16 9 C 0.07 1.23 3.55 -3.82 -0.01 1.22 16 10 N -0.50 -10.50 4.65 -228.08 -1.06 -11.56 16 11 C 0.16 3.92 2.44 -4.98 -0.01 3.90 16 12 C -0.51 -14.44 9.15 -34.44 -0.31 -14.76 16 13 H 0.08 2.47 7.84 -52.49 -0.41 2.06 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 16 Si 0.87 21.71 27.37 -169.99 -4.65 17.06 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.27 -6.47 6.69 56.52 0.38 -6.09 16 20 C 0.03 0.54 5.83 -67.72 -0.40 0.15 16 21 C -0.23 -3.98 9.57 -26.73 -0.26 -4.24 16 22 C -0.18 -3.02 9.90 -26.73 -0.26 -3.28 16 23 H 0.03 0.32 7.95 -51.93 -0.41 -0.09 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.24 5.26 -51.93 -0.27 0.97 16 26 H 0.04 0.43 7.89 -51.93 -0.41 0.02 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.81 7.69 -51.93 -0.40 0.42 16 32 H 0.06 0.95 6.60 -51.93 -0.34 0.61 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.69 7.24 -51.93 -0.38 1.31 16 35 H 0.03 0.59 6.26 -51.93 -0.33 0.27 16 36 H -0.01 -0.27 7.19 -51.92 -0.37 -0.64 16 37 H 0.03 0.68 4.74 -51.93 -0.25 0.43 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 39 H 0.11 1.78 6.43 -51.93 -0.33 1.45 16 40 H 0.10 1.89 6.06 -51.93 -0.31 1.57 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.10 1.83 7.37 -51.93 -0.38 1.44 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -30.20 324.05 -10.23 -40.43 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.55 Total: 2.12 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -1.46 Total: -17.99 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -1.46 Total: -46.50 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.65 Total: 17.06 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.20 -10.23 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687807472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.281 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds