Wall clock time and date at job start Mon Mar 30 2020 03:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48525 * 110.99989 * 2 1 4 4 C 1.54945 * 103.22471 * 159.71744 * 3 2 1 5 5 C 1.54586 * 102.92392 * 322.58418 * 4 3 2 6 6 C 1.47903 * 110.99637 * 117.39704 * 2 1 3 7 7 H 1.09003 * 110.08442 * 333.59635 * 6 2 1 8 8 C 1.52996 * 109.91978 * 94.80258 * 6 2 1 9 9 C 1.53004 * 109.47214 * 292.15143 * 8 6 2 10 10 N 1.46897 * 109.46984 * 185.78755 * 9 8 6 11 11 C 1.46902 * 110.99770 * 170.00041 * 10 9 8 12 12 C 1.50699 * 109.47154 * 285.17337 * 11 10 9 13 13 H 1.07997 * 120.00287 * 4.98447 * 12 11 10 14 14 C 1.37881 * 120.00102 * 184.98932 * 12 11 10 15 15 N 1.31508 * 120.00055 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99876 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46946 * 90.00104 * 16 14 12 18 18 H 1.48492 * 109.47311 * 210.00090 * 16 14 12 19 19 H 1.48503 * 109.47165 * 330.00325 * 16 14 12 20 20 C 1.46900 * 110.99947 * 293.94852 * 10 9 8 21 21 C 1.52997 * 117.50162 * 248.08658 * 20 10 9 22 22 C 1.52995 * 117.49898 * 179.46042 * 20 10 9 23 23 H 1.08998 * 109.47568 * 307.69219 * 1 2 3 24 24 H 1.09003 * 109.47072 * 67.68679 * 1 2 3 25 25 H 1.09001 * 109.47337 * 187.68849 * 1 2 3 26 26 H 1.09000 * 110.67213 * 41.28662 * 3 2 1 27 27 H 1.09005 * 110.81256 * 278.21671 * 3 2 1 28 28 H 1.09000 * 110.72323 * 204.22181 * 4 3 2 29 29 H 1.09004 * 110.72161 * 80.94637 * 4 3 2 30 30 H 1.09006 * 110.31086 * 263.04153 * 5 4 3 31 31 H 1.08997 * 110.39396 * 140.91513 * 5 4 3 32 32 H 1.09001 * 109.47071 * 52.15210 * 8 6 2 33 33 H 1.09007 * 109.47069 * 172.15293 * 8 6 2 34 34 H 1.09002 * 109.46971 * 305.78577 * 9 8 6 35 35 H 1.08993 * 109.46760 * 65.78203 * 9 8 6 36 36 H 1.09008 * 109.47281 * 45.16965 * 11 10 9 37 37 H 1.09001 * 109.47388 * 165.16847 * 11 10 9 38 38 H 0.97005 * 120.00079 * 179.97438 * 15 14 12 39 39 H 1.09002 * 115.54828 * 33.79924 * 20 10 9 40 40 H 1.08993 * 117.49846 * 359.97438 * 21 20 10 41 41 H 1.08999 * 117.49906 * 145.02657 * 21 20 10 42 42 H 1.09003 * 117.50174 * 214.98520 * 22 20 10 43 43 H 1.09005 * 117.50200 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4491 1.2105 0.5229 5 6 3.2982 0.1053 1.5931 6 6 1.9989 -0.6354 1.2259 7 1 1.2770 -0.5432 2.0374 8 6 2.2981 -2.1121 0.9601 9 6 0.9862 -2.8649 0.7298 10 7 1.2610 -4.3031 0.6124 11 6 0.0145 -5.0803 0.6281 12 6 -0.5299 -5.1282 2.0325 13 1 -0.0478 -4.5653 2.8181 14 6 -1.6433 -5.8910 2.3147 15 7 -2.1181 -5.9332 3.5404 16 14 -2.4775 -6.8643 0.9559 17 1 -1.8756 -8.2196 0.8768 18 1 -3.9279 -6.9833 1.2510 19 1 -2.2918 -6.1638 -0.3403 20 6 2.0463 -4.5921 -0.5950 21 6 1.3575 -5.3738 -1.7155 22 6 2.4283 -6.0503 -0.8570 23 1 -0.3634 0.6283 0.8132 24 1 -0.3633 0.3902 -0.9507 25 1 -0.3634 -1.0184 0.1375 26 1 1.4237 2.0205 0.6729 27 1 2.0041 1.8004 -1.0085 28 1 3.8123 2.1351 0.9716 29 1 4.1115 0.8835 -0.2786 30 1 3.2135 0.5486 2.5854 31 1 4.1466 -0.5779 1.5559 32 1 2.9285 -2.2015 0.0754 33 1 2.8156 -2.5384 1.8196 34 1 0.3149 -2.6907 1.5708 35 1 0.5189 -2.5080 -0.1880 36 1 -0.7162 -4.6084 -0.0288 37 1 0.2139 -6.0941 0.2809 38 1 -2.9016 -6.4695 3.7388 39 1 2.7638 -3.8242 -0.8841 40 1 0.3219 -5.6740 -1.5566 41 1 1.6217 -5.1202 -2.7421 42 1 3.3969 -6.2417 -1.3189 43 1 2.0965 -6.7953 -0.1338 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687807472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:58 Heat of formation + Delta-G solvation = 17.404519 kcal Electronic energy + Delta-G solvation = -19511.276019 eV Core-core repulsion = 16784.416432 eV Total energy + Delta-G solvation = -2726.859587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43981 -39.47871 -35.50577 -34.67725 -33.10809 -32.53592 -29.72450 -27.36769 -26.50716 -24.23683 -23.44793 -23.13020 -21.98009 -20.98000 -20.30520 -19.16631 -17.20011 -17.01566 -16.74653 -16.22224 -16.02599 -15.75223 -14.85917 -14.73444 -14.55223 -14.20685 -13.82719 -13.71048 -13.59905 -13.38104 -13.08072 -12.64382 -12.54090 -12.38259 -12.35221 -12.18878 -12.07308 -11.96069 -11.78886 -11.45948 -11.45888 -11.35724 -11.15877 -11.05294 -10.79171 -9.39739 -8.79911 -8.31290 -6.33676 1.30144 1.30893 1.41823 2.30448 2.87742 3.01885 3.07300 3.29542 3.70209 3.83110 3.98417 4.04823 4.11760 4.21083 4.25697 4.39271 4.42159 4.47337 4.53123 4.55469 4.69742 4.76144 4.77606 4.79142 4.87488 4.97450 4.98750 5.02931 5.05301 5.07139 5.17209 5.20488 5.28924 5.31177 5.33480 5.41729 5.53978 5.98514 6.01914 6.10694 6.44042 6.66072 6.72409 7.29519 8.85645 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021988 B = 0.005939 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.114322 B = 4713.533595 C = 5297.787996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.524 5.524 3 C 0.031 3.969 4 C -0.115 4.115 5 C -0.125 4.125 6 C 0.065 3.935 7 H 0.034 0.966 8 C -0.083 4.083 9 C 0.076 3.924 10 N -0.516 5.516 11 C 0.177 3.823 12 C -0.514 4.514 13 H 0.035 0.965 14 C 0.011 3.989 15 N -0.946 5.946 16 Si 0.941 3.059 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.255 1.255 20 C 0.016 3.984 21 C -0.225 4.225 22 C -0.171 4.171 23 H 0.027 0.973 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.033 0.967 36 H -0.018 1.018 37 H 0.029 0.971 38 H 0.267 0.733 39 H 0.135 0.865 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.124 0.876 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.684 12.519 -10.790 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.249 5.249 3 C -0.097 4.097 4 C -0.152 4.152 5 C -0.163 4.163 6 C -0.044 4.044 7 H 0.052 0.948 8 C -0.121 4.121 9 C -0.052 4.052 10 N -0.237 5.237 11 C 0.050 3.950 12 C -0.552 4.552 13 H 0.053 0.947 14 C -0.187 4.187 15 N -0.587 5.587 16 Si 0.765 3.235 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.179 1.179 20 C -0.093 4.093 21 C -0.264 4.264 22 C -0.209 4.209 23 H 0.046 0.954 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.000 1.000 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.153 0.847 40 H 0.091 0.909 41 H 0.133 0.867 42 H 0.142 0.858 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.963 12.029 -10.713 19.485 hybrid contribution -1.864 -0.147 0.231 1.884 sum 9.099 11.882 -10.482 18.272 Atomic orbital electron populations 1.22641 0.88231 1.01585 1.01391 1.64659 1.07893 1.15697 1.36610 1.23344 0.95681 0.88975 1.01677 1.22462 0.95912 0.98697 0.98179 1.22448 0.96397 0.97998 0.99467 1.22395 0.96718 0.94576 0.90699 0.94782 1.21499 0.96181 0.92584 1.01881 1.21995 0.97703 0.86527 0.98944 1.61747 1.19977 1.06907 1.35077 1.19919 0.86904 0.93466 0.94731 1.21262 1.11239 1.28136 0.94571 0.94686 1.25787 0.97487 0.97597 0.97790 1.70041 1.24994 1.42475 1.21217 0.85800 0.77965 0.79703 0.80046 1.18884 1.20392 1.17883 1.22873 1.00587 0.95770 0.90103 1.23536 0.97714 1.07385 0.97736 1.23090 1.00129 0.95420 1.02215 0.95416 0.90220 0.92540 0.93779 0.89131 0.89309 0.90385 0.90990 0.90222 0.90631 0.91989 0.94125 0.94912 1.00048 0.95259 0.92404 0.84721 0.90903 0.86712 0.85805 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.11 127.69 1.16 1.43 16 2 N -0.52 -13.31 5.07 -884.06 -4.48 -17.79 16 3 C 0.03 0.59 6.56 86.65 0.57 1.16 16 4 C -0.11 -1.90 7.06 31.80 0.22 -1.68 16 5 C -0.12 -2.57 6.57 31.47 0.21 -2.36 16 6 C 0.07 1.76 2.59 45.06 0.12 1.88 16 7 H 0.03 1.05 7.78 -2.39 -0.02 1.03 16 8 C -0.08 -2.58 4.55 30.59 0.14 -2.44 16 9 C 0.08 2.96 3.55 86.31 0.31 3.27 16 10 N -0.52 -22.16 4.65 -875.52 -4.07 -26.23 16 11 C 0.18 8.82 2.44 85.56 0.21 9.03 16 12 C -0.51 -30.73 9.15 25.60 0.23 -30.49 16 13 H 0.03 2.34 7.84 -2.91 -0.02 2.32 16 14 C 0.01 0.64 5.47 84.66 0.46 1.10 16 15 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 16 Si 0.94 45.28 27.37 68.60 1.88 47.16 16 17 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.25 -11.61 6.69 99.48 0.67 -10.95 16 20 C 0.02 0.55 5.83 44.91 0.26 0.81 16 21 C -0.22 -7.19 9.57 30.59 0.29 -6.90 16 22 C -0.17 -5.36 9.90 30.59 0.30 -5.06 16 23 H 0.03 0.70 7.95 -2.39 -0.02 0.68 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.06 1.77 5.26 -2.39 -0.01 1.76 16 26 H 0.04 0.83 7.89 -2.39 -0.02 0.81 16 27 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.08 1.57 7.69 -2.39 -0.02 1.55 16 32 H 0.08 2.15 6.60 -2.39 -0.02 2.14 16 33 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.04 1.87 7.24 -2.39 -0.02 1.85 16 35 H 0.03 1.26 6.26 -2.39 -0.01 1.25 16 36 H -0.02 -0.92 7.19 -2.38 -0.02 -0.94 16 37 H 0.03 1.45 4.74 -2.39 -0.01 1.44 16 38 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 39 H 0.14 3.94 6.43 -2.39 -0.02 3.92 16 40 H 0.07 2.71 6.06 -2.39 -0.01 2.70 16 41 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 42 H 0.12 2.99 8.14 -2.39 -0.02 2.98 16 43 H 0.07 2.68 7.37 -2.38 -0.02 2.66 16 Total: -1.00 -67.68 324.05 -0.97 -68.65 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.92 Total: 18.45 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 4.49 Total: -30.25 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -8.26 Total: -104.01 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -67.68 -0.97 -68.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687807472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.053 kcal (2) G-P(sol) polarization free energy of solvation -67.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds