Wall clock time and date at job start Mon Mar 30 2020 03:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48855 * 111.12697 * 2 1 4 4 C 1.54375 * 104.62965 * 201.00393 * 3 2 1 5 5 C 1.54264 * 105.06000 * 23.85481 * 4 3 2 6 6 C 1.48561 * 111.00209 * 244.68148 * 2 1 3 7 7 H 1.09003 * 110.40594 * 40.25669 * 6 2 1 8 8 C 1.52994 * 110.41122 * 277.93420 * 6 2 1 9 9 C 1.52992 * 109.47206 * 179.20278 * 8 6 2 10 10 N 1.46902 * 109.47571 * 185.94272 * 9 8 6 11 11 C 1.46897 * 111.00366 * 169.99717 * 10 9 8 12 12 C 1.50701 * 109.47434 * 292.21352 * 11 10 9 13 13 H 1.07997 * 119.99643 * 4.55981 * 12 11 10 14 14 C 1.37872 * 119.99958 * 184.56485 * 12 11 10 15 15 N 1.31512 * 120.00076 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00050 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47146 * 90.00239 * 16 14 12 18 18 H 1.48498 * 109.47261 * 209.99887 * 16 14 12 19 19 H 1.48501 * 109.47266 * 329.99999 * 16 14 12 20 20 C 1.46906 * 110.99952 * 293.95819 * 10 9 8 21 21 C 1.52992 * 117.49558 * 242.48057 * 20 10 9 22 22 C 1.52997 * 117.49494 * 173.82156 * 20 10 9 23 23 H 1.09001 * 109.46777 * 180.37683 * 1 2 3 24 24 H 1.08994 * 109.47294 * 300.37842 * 1 2 3 25 25 H 1.08997 * 109.47154 * 60.38314 * 1 2 3 26 26 H 1.09002 * 110.39383 * 82.21619 * 3 2 1 27 27 H 1.09000 * 110.49998 * 319.84627 * 3 2 1 28 28 H 1.09005 * 110.32543 * 264.95694 * 4 3 2 29 29 H 1.09001 * 110.32887 * 142.75079 * 4 3 2 30 30 H 1.08998 * 110.32007 * 241.10225 * 5 4 3 31 31 H 1.09001 * 110.40580 * 118.94022 * 5 4 3 32 32 H 1.09006 * 109.47313 * 299.20773 * 8 6 2 33 33 H 1.09008 * 109.46986 * 59.19979 * 8 6 2 34 34 H 1.09000 * 109.47386 * 305.94409 * 9 8 6 35 35 H 1.09004 * 109.47329 * 65.94652 * 9 8 6 36 36 H 1.09005 * 109.46766 * 52.21413 * 11 10 9 37 37 H 1.09003 * 109.46973 * 172.20621 * 11 10 9 38 38 H 0.97002 * 120.00343 * 179.97438 * 15 14 12 39 39 H 1.08995 * 115.54828 * 28.15442 * 20 10 9 40 40 H 1.09005 * 117.49969 * 0.02562 * 21 20 10 41 41 H 1.09002 * 117.49951 * 145.02083 * 21 20 10 42 42 H 1.09001 * 117.49998 * 214.97222 * 22 20 10 43 43 H 1.08998 * 117.50277 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0056 1.3885 0.0000 4 6 3.4468 1.2496 -0.5354 5 6 3.4441 -0.0541 -1.3602 6 6 2.0015 -0.5931 -1.2537 7 1 1.4098 -0.2676 -2.1093 8 6 2.0079 -2.1202 -1.1608 9 6 2.5408 -2.7085 -2.4687 10 7 2.4146 -4.1717 -2.4349 11 6 2.6920 -4.7547 -3.7544 12 6 1.6018 -4.3602 -4.7172 13 1 0.8245 -3.6794 -4.4032 14 6 1.5967 -4.8687 -5.9987 15 7 0.6450 -4.5248 -6.8388 16 14 2.9415 -6.0459 -6.5419 17 1 2.5242 -7.4415 -6.2529 18 1 3.1756 -5.8912 -8.0001 19 1 4.1939 -5.7410 -5.8045 20 6 3.2904 -4.7521 -1.4082 21 6 4.3961 -5.7001 -1.8766 22 6 3.1711 -6.2545 -1.1450 23 1 -0.3633 -1.0277 0.0068 24 1 -0.3633 0.5197 0.8865 25 1 -0.3633 0.5079 -0.8934 26 1 2.0134 1.7927 1.0123 27 1 1.4152 2.0258 -0.6584 28 1 4.1523 1.1727 0.2920 29 1 3.6983 2.0989 -1.1706 30 1 4.1483 -0.7708 -0.9376 31 1 3.6948 0.1538 -2.4004 32 1 2.6479 -2.4313 -0.3350 33 1 0.9928 -2.4780 -0.9883 34 1 1.9654 -2.3135 -3.3059 35 1 3.5897 -2.4371 -2.5885 36 1 3.6505 -4.3864 -4.1201 37 1 2.7280 -5.8410 -3.6713 38 1 0.6416 -4.8822 -7.7405 39 1 3.5074 -4.1076 -0.5564 40 1 4.4739 -5.8929 -2.9466 41 1 5.3405 -5.6797 -1.3327 42 1 3.3101 -6.5986 -0.1201 43 1 2.4431 -6.8124 -1.7340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687807473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:02 Heat of formation + Delta-G solvation = 34.612914 kcal Electronic energy + Delta-G solvation = -19334.405866 eV Core-core repulsion = 16608.292491 eV Total energy + Delta-G solvation = -2726.113375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.20474 -38.09821 -34.09963 -32.73457 -32.10179 -31.05715 -27.91395 -25.98224 -25.34151 -22.43774 -22.41629 -21.73126 -20.91622 -19.85784 -18.64320 -17.06745 -16.02073 -15.72999 -15.24952 -14.73361 -14.54395 -14.17602 -13.75806 -13.68240 -13.05280 -12.78731 -12.54017 -12.29828 -12.19577 -11.89731 -11.64674 -11.37707 -11.19323 -11.08665 -11.01038 -10.76548 -10.64004 -10.44635 -10.41517 -10.28707 -9.92014 -9.81274 -9.69939 -9.17034 -8.57248 -8.47056 -7.20703 -6.06282 -4.03320 3.27388 3.34970 3.36740 3.98185 4.31727 4.41020 4.64468 4.72914 4.80876 5.00128 5.22571 5.26649 5.37116 5.39693 5.43712 5.48985 5.52474 5.58569 5.61631 5.71475 5.77134 5.90914 5.92381 5.95176 6.00106 6.06343 6.11528 6.18112 6.22377 6.37003 6.46049 6.62280 6.65287 6.70234 6.87936 6.94861 6.99105 7.09702 7.60487 7.92430 8.09332 8.65005 9.01875 9.55650 11.06837 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.005686 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.346133 B = 4923.331593 C = 5549.424546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.513 5.513 3 C 0.031 3.969 4 C -0.124 4.124 5 C -0.120 4.120 6 C 0.064 3.936 7 H 0.055 0.945 8 C -0.097 4.097 9 C 0.066 3.934 10 N -0.495 5.495 11 C 0.161 3.839 12 C -0.509 4.509 13 H 0.080 0.920 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.872 3.128 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.027 3.973 21 C -0.229 4.229 22 C -0.177 4.177 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.023 0.977 36 H -0.010 1.010 37 H 0.028 0.972 38 H 0.263 0.737 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.354 8.254 13.143 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.237 5.237 3 C -0.097 4.097 4 C -0.162 4.162 5 C -0.159 4.159 6 C -0.045 4.045 7 H 0.073 0.927 8 C -0.135 4.135 9 C -0.062 4.062 10 N -0.216 5.216 11 C 0.035 3.965 12 C -0.547 4.547 13 H 0.098 0.902 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.700 3.300 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.084 4.084 21 C -0.268 4.268 22 C -0.215 4.215 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.008 0.992 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.928 7.832 13.535 16.395 hybrid contribution 1.127 -0.106 -1.379 1.785 sum 6.055 7.726 12.156 15.624 Atomic orbital electron populations 1.22505 0.88059 1.02652 1.00311 1.65390 1.08132 1.14495 1.35652 1.23141 0.95374 0.90510 1.00705 1.22285 0.96446 0.97899 0.99615 1.22371 0.96679 0.96661 1.00151 1.22703 0.95094 0.95955 0.90736 0.92696 1.21511 1.02368 0.91752 0.97861 1.21975 0.98544 0.87982 0.97704 1.61801 1.49342 1.04173 1.06330 1.20238 0.95851 0.94890 0.85475 1.21041 1.10249 1.28563 0.94864 0.90190 1.24876 0.95542 0.96264 0.96524 1.69889 1.32897 1.44891 1.06243 0.86905 0.83099 0.82046 0.77996 1.20093 1.21179 1.19280 1.22712 0.95764 0.91801 0.98076 1.23555 0.93483 1.08248 1.01516 1.23002 1.00440 0.97494 1.00517 0.90781 0.91735 0.95376 0.90514 0.94028 0.91276 0.91609 0.90967 0.91212 0.92004 0.91220 0.89461 0.95856 0.99230 0.95447 0.92673 0.87335 0.88270 0.89842 0.89375 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.43 60.07 0.57 0.73 16 2 N -0.51 -6.60 5.35 -230.10 -1.23 -7.83 16 3 C 0.03 0.33 6.50 -2.02 -0.01 0.32 16 4 C -0.12 -1.29 7.00 -25.35 -0.18 -1.47 16 5 C -0.12 -1.49 5.74 -25.35 -0.15 -1.64 16 6 C 0.06 0.89 2.33 -66.08 -0.15 0.73 16 7 H 0.06 0.83 7.90 -51.93 -0.41 0.42 16 8 C -0.10 -1.52 4.73 -26.74 -0.13 -1.64 16 9 C 0.07 1.24 4.53 -3.83 -0.02 1.23 16 10 N -0.50 -10.38 4.69 -228.09 -1.07 -11.45 16 11 C 0.16 3.91 2.41 -4.98 -0.01 3.90 16 12 C -0.51 -14.41 9.04 -34.44 -0.31 -14.72 16 13 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 16 Si 0.87 21.55 27.38 -169.99 -4.65 16.90 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.39 6.68 56.52 0.38 -6.01 16 20 C 0.03 0.47 5.81 -67.72 -0.39 0.08 16 21 C -0.23 -3.87 9.52 -26.70 -0.25 -4.12 16 22 C -0.18 -2.92 9.97 -26.70 -0.27 -3.18 16 23 H 0.07 0.91 7.49 -51.93 -0.39 0.52 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.33 7.98 -51.93 -0.41 -0.09 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.44 7.99 -51.93 -0.41 0.02 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.91 7.81 -51.93 -0.41 0.50 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.94 6.55 -51.93 -0.34 0.60 16 33 H 0.07 1.18 7.48 -51.92 -0.39 0.79 16 34 H 0.09 1.86 6.69 -51.93 -0.35 1.51 16 35 H 0.02 0.42 7.62 -51.93 -0.40 0.03 16 36 H -0.01 -0.25 7.11 -51.93 -0.37 -0.62 16 37 H 0.03 0.68 5.28 -51.93 -0.27 0.40 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.11 1.71 6.43 -51.93 -0.33 1.38 16 40 H 0.10 1.90 5.91 -51.93 -0.31 1.59 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.10 1.75 7.67 -51.93 -0.40 1.36 16 LS Contribution 327.33 15.07 4.93 4.93 Total: -1.00 -29.94 327.33 -10.34 -40.29 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.69 Total: 1.79 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -1.40 Total: -17.88 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -1.53 Total: -46.02 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.65 Total: 16.90 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.94 -10.34 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687807473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.900 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds