Wall clock time and date at job start Mon Mar 30 2020 03:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46845 * 111.00229 * 2 1 4 4 C 1.53029 * 109.52556 * 174.15911 * 3 2 1 5 5 C 1.53118 * 109.28211 * 59.18041 * 4 3 2 6 6 C 1.52995 * 109.52752 * 182.37556 * 5 4 3 7 7 N 1.46905 * 109.47185 * 184.87177 * 6 5 4 8 8 C 1.46904 * 111.00045 * 190.00251 * 7 6 5 9 9 C 1.50697 * 109.47016 * 159.88450 * 8 7 6 10 10 H 1.07996 * 120.00099 * 354.21450 * 9 8 7 11 11 C 1.37880 * 119.99926 * 174.21541 * 9 8 7 12 12 N 1.31517 * 119.99900 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 119.99993 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47269 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47257 * 120.00118 * 13 11 9 16 16 H 1.48502 * 109.47174 * 240.00082 * 13 11 9 17 17 C 1.46895 * 110.99817 * 66.04869 * 7 6 5 18 18 C 1.52997 * 117.49891 * 261.74791 * 17 7 6 19 19 C 1.52999 * 117.49756 * 193.08783 * 17 7 6 20 20 C 1.53117 * 109.21080 * 302.31694 * 5 4 3 21 21 C 1.46846 * 111.00267 * 235.79019 * 2 1 3 22 22 H 1.09006 * 109.47015 * 60.00005 * 1 2 3 23 23 H 1.09003 * 109.47394 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47269 * 300.00339 * 1 2 3 25 25 H 1.09001 * 109.45835 * 54.14305 * 3 2 1 26 26 H 1.08999 * 109.46507 * 294.17604 * 3 2 1 27 27 H 1.09005 * 109.50808 * 299.23733 * 4 3 2 28 28 H 1.09004 * 109.50770 * 179.11946 * 4 3 2 29 29 H 1.09008 * 109.51959 * 62.24889 * 5 4 3 30 30 H 1.08993 * 109.47544 * 304.87757 * 6 5 4 31 31 H 1.09004 * 109.47108 * 64.87846 * 6 5 4 32 32 H 1.08999 * 109.46633 * 279.88831 * 8 7 6 33 33 H 1.08997 * 109.46900 * 39.88240 * 8 7 6 34 34 H 0.96991 * 120.00120 * 180.02562 * 12 11 9 35 35 H 1.09001 * 115.55022 * 47.42123 * 17 7 6 36 36 H 1.08997 * 117.50135 * 359.97438 * 18 17 7 37 37 H 1.09003 * 117.50110 * 145.02402 * 18 17 7 38 38 H 1.09003 * 117.49761 * 214.98018 * 19 17 7 39 39 H 1.08997 * 117.50267 * 359.97434 * 19 17 7 40 40 H 1.08998 * 109.50533 * 177.62315 * 20 5 4 41 41 H 1.09000 * 109.50563 * 297.73877 * 20 5 4 42 42 H 1.09004 * 109.46205 * 305.85709 * 21 2 1 43 43 H 1.09001 * 109.46371 * 65.83373 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1189 0.5370 -1.0143 6 6 5.6363 0.4463 -0.8413 7 7 6.2240 -0.2167 -2.0131 8 6 7.6396 -0.5350 -1.7830 9 6 8.0744 -1.6128 -2.7423 10 1 7.3491 -2.0864 -3.3873 11 6 9.3982 -1.9944 -2.7964 12 7 10.2814 -1.4181 -2.0105 13 14 9.9373 -3.3300 -3.9859 14 1 8.7614 -3.8139 -4.7528 15 1 10.9471 -2.7785 -4.9247 16 1 10.5322 -4.4588 -3.2262 17 6 6.0584 0.6038 -3.2203 18 6 4.8962 0.2601 -4.1540 19 6 6.3337 -0.0618 -4.5701 20 6 3.5195 -0.8720 -1.0214 21 6 1.9953 -0.7708 -1.1337 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.5634 1.9256 0.8330 26 1 1.7326 1.8608 -0.9376 27 1 3.7814 0.8567 1.0907 28 1 3.9099 2.3512 0.1310 29 1 3.8887 1.0355 -1.9560 30 1 6.0516 1.4494 -0.7449 31 1 5.8660 -0.1297 0.0552 32 1 8.2434 0.3585 -1.9423 33 1 7.7716 -0.8848 -0.7592 34 1 11.2127 -1.6863 -2.0489 35 1 6.3246 1.6555 -3.1141 36 1 4.2547 -0.5751 -3.8729 37 1 4.3980 1.0855 -4.6626 38 1 6.7807 0.5520 -5.3521 39 1 6.6381 -1.1084 -4.5624 40 1 3.9122 -1.4303 -1.8713 41 1 3.7827 -1.3842 -0.0960 42 1 1.5634 -1.7716 -1.1242 43 1 1.7327 -0.2707 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691571164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:51 Heat of formation + Delta-G solvation = 26.146176 kcal Electronic energy + Delta-G solvation = -19596.937201 eV Core-core repulsion = 16870.456680 eV Total energy + Delta-G solvation = -2726.480521 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.15339 -37.46405 -34.36051 -33.17474 -31.80905 -30.65760 -28.12905 -26.21735 -23.94186 -22.97209 -22.19254 -21.57026 -21.37756 -19.54849 -19.06237 -16.52889 -15.66787 -15.06479 -14.94156 -14.67792 -14.58177 -14.46466 -13.86744 -13.66676 -13.09312 -12.54647 -12.44358 -12.28161 -12.10625 -11.98925 -11.59066 -11.21912 -11.19615 -11.00362 -10.91123 -10.78039 -10.59292 -10.26790 -10.13835 -10.00977 -9.76641 -9.46833 -9.09288 -9.02679 -8.36003 -8.31392 -7.20770 -5.97210 -3.96773 3.33046 3.40786 3.44694 3.97221 4.44248 4.62244 4.77913 4.98416 5.03755 5.10077 5.27099 5.36134 5.38490 5.44768 5.58326 5.64327 5.69916 5.72344 5.75147 5.80139 5.90763 5.94442 5.96297 6.16424 6.19447 6.24897 6.27449 6.35429 6.43244 6.51799 6.66908 6.78297 6.85965 7.06188 7.10813 7.15531 7.28501 7.44229 7.90733 8.18087 8.27602 8.61084 9.09967 9.65858 11.13531 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.032175 B = 0.005033 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.040097 B = 5562.087361 C = 5648.422075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.060 3.940 4 C -0.113 4.113 5 C -0.081 4.081 6 C 0.066 3.934 7 N -0.507 5.507 8 C 0.195 3.805 9 C -0.494 4.494 10 H 0.068 0.932 11 C 0.053 3.947 12 N -0.901 5.901 13 Si 0.893 3.107 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.029 3.971 18 C -0.186 4.186 19 C -0.158 4.158 20 C -0.099 4.099 21 C 0.055 3.945 22 H 0.021 0.979 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.029 0.971 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.019 0.981 31 H 0.068 0.932 32 H -0.004 1.004 33 H 0.024 0.976 34 H 0.259 0.741 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.166 5.078 1.546 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.068 4.068 4 C -0.151 4.151 5 C -0.100 4.100 6 C -0.063 4.063 7 N -0.232 5.232 8 C 0.070 3.930 9 C -0.533 4.533 10 H 0.085 0.915 11 C -0.148 4.148 12 N -0.541 5.541 13 Si 0.721 3.279 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.080 4.080 18 C -0.224 4.224 19 C -0.195 4.195 20 C -0.137 4.137 21 C -0.072 4.072 22 H 0.039 0.961 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.014 0.986 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.136 0.864 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -16.052 4.396 1.953 16.758 hybrid contribution 0.635 0.565 -1.173 1.448 sum -15.417 4.961 0.780 16.214 Atomic orbital electron populations 1.22334 0.87974 1.01792 1.00186 1.61941 1.06924 1.13891 1.44106 1.22050 0.96057 0.88920 0.99808 1.21639 0.93627 1.00033 0.99835 1.21177 0.95014 0.96066 0.97784 1.22049 0.93170 0.96506 0.94555 1.61891 1.20507 1.40705 1.00059 1.19709 0.80635 0.95630 0.97027 1.21260 0.92802 1.18778 1.20445 0.91450 1.24981 0.96754 0.96871 0.96161 1.69967 1.02458 1.42683 1.39032 0.86521 0.78612 0.81810 0.80965 1.19662 1.21239 1.21156 1.22025 1.02282 0.94259 0.89468 1.23032 0.92108 1.02710 1.04509 1.23129 0.96346 1.03784 0.96201 1.21530 0.91841 0.97054 1.03282 1.22204 0.97011 0.97389 0.90641 0.96075 0.91566 0.91705 0.91318 0.95284 0.91180 0.91978 0.91354 0.96279 0.91380 0.98579 0.95839 0.93140 0.91710 0.89002 0.90595 0.90386 0.86437 0.89938 0.91680 0.91247 0.95312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.59 60.06 0.58 0.83 16 2 N -0.54 -6.64 4.91 -242.88 -1.19 -7.83 16 3 C 0.06 0.69 5.46 -3.84 -0.02 0.67 16 4 C -0.11 -1.44 5.38 -26.66 -0.14 -1.59 16 5 C -0.08 -1.21 2.09 -90.50 -0.19 -1.39 16 6 C 0.07 1.18 4.33 -3.82 -0.02 1.16 16 7 N -0.51 -10.65 4.08 -228.09 -0.93 -11.58 16 8 C 0.19 5.02 4.77 -4.98 -0.02 4.99 16 9 C -0.49 -13.54 7.81 -34.44 -0.27 -13.81 16 10 H 0.07 1.82 5.78 -52.49 -0.30 1.52 16 11 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 12 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 13 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.03 0.56 4.18 -67.72 -0.28 0.28 16 18 C -0.19 -3.06 9.18 -26.69 -0.25 -3.30 16 19 C -0.16 -3.01 9.48 -26.69 -0.25 -3.27 16 20 C -0.10 -1.47 5.25 -26.58 -0.14 -1.61 16 21 C 0.06 0.70 5.47 -3.77 -0.02 0.68 16 22 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 23 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 26 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.05 6.31 -51.92 -0.33 0.72 16 30 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.07 1.26 7.83 -51.93 -0.41 0.86 16 32 H 0.00 -0.11 7.99 -51.93 -0.42 -0.52 16 33 H 0.02 0.65 7.73 -51.93 -0.40 0.25 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.09 1.52 7.40 -51.93 -0.38 1.14 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.12 2.54 5.42 -51.93 -0.28 2.26 16 40 H 0.08 1.36 7.09 -51.93 -0.37 0.99 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 43 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -28.75 329.28 -10.50 -39.25 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.93 Total: -0.34 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -1.13 Total: -14.96 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -1.39 Total: -45.45 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.75 -10.50 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691571164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.396 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds