Wall clock time and date at job start Mon Mar 30 2020 03:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46845 * 111.00229 * 2 1 4 4 C 1.53029 * 109.52556 * 174.15911 * 3 2 1 5 5 C 1.53118 * 109.28211 * 59.18041 * 4 3 2 6 6 C 1.52995 * 109.52752 * 182.37556 * 5 4 3 7 7 N 1.46905 * 109.47185 * 184.87177 * 6 5 4 8 8 C 1.46904 * 111.00045 * 190.00251 * 7 6 5 9 9 C 1.50697 * 109.47016 * 159.88450 * 8 7 6 10 10 H 1.07996 * 120.00099 * 354.21450 * 9 8 7 11 11 C 1.37880 * 119.99926 * 174.21541 * 9 8 7 12 12 N 1.31517 * 119.99900 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 119.99993 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47269 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47257 * 120.00118 * 13 11 9 16 16 H 1.48502 * 109.47174 * 240.00082 * 13 11 9 17 17 C 1.46895 * 110.99817 * 66.04869 * 7 6 5 18 18 C 1.52997 * 117.49891 * 261.74791 * 17 7 6 19 19 C 1.52999 * 117.49756 * 193.08783 * 17 7 6 20 20 C 1.53117 * 109.21080 * 302.31694 * 5 4 3 21 21 C 1.46846 * 111.00267 * 235.79019 * 2 1 3 22 22 H 1.09006 * 109.47015 * 60.00005 * 1 2 3 23 23 H 1.09003 * 109.47394 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47269 * 300.00339 * 1 2 3 25 25 H 1.09001 * 109.45835 * 54.14305 * 3 2 1 26 26 H 1.08999 * 109.46507 * 294.17604 * 3 2 1 27 27 H 1.09005 * 109.50808 * 299.23733 * 4 3 2 28 28 H 1.09004 * 109.50770 * 179.11946 * 4 3 2 29 29 H 1.09008 * 109.51959 * 62.24889 * 5 4 3 30 30 H 1.08993 * 109.47544 * 304.87757 * 6 5 4 31 31 H 1.09004 * 109.47108 * 64.87846 * 6 5 4 32 32 H 1.08999 * 109.46633 * 279.88831 * 8 7 6 33 33 H 1.08997 * 109.46900 * 39.88240 * 8 7 6 34 34 H 0.96991 * 120.00120 * 180.02562 * 12 11 9 35 35 H 1.09001 * 115.55022 * 47.42123 * 17 7 6 36 36 H 1.08997 * 117.50135 * 359.97438 * 18 17 7 37 37 H 1.09003 * 117.50110 * 145.02402 * 18 17 7 38 38 H 1.09003 * 117.49761 * 214.98018 * 19 17 7 39 39 H 1.08997 * 117.50267 * 359.97434 * 19 17 7 40 40 H 1.08998 * 109.50533 * 177.62315 * 20 5 4 41 41 H 1.09000 * 109.50563 * 297.73877 * 20 5 4 42 42 H 1.09004 * 109.46205 * 305.85709 * 21 2 1 43 43 H 1.09001 * 109.46371 * 65.83373 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1189 0.5370 -1.0143 6 6 5.6363 0.4463 -0.8413 7 7 6.2240 -0.2167 -2.0131 8 6 7.6396 -0.5350 -1.7830 9 6 8.0744 -1.6128 -2.7423 10 1 7.3491 -2.0864 -3.3873 11 6 9.3982 -1.9944 -2.7964 12 7 10.2814 -1.4181 -2.0105 13 14 9.9373 -3.3300 -3.9859 14 1 8.7614 -3.8139 -4.7528 15 1 10.9471 -2.7785 -4.9247 16 1 10.5322 -4.4588 -3.2262 17 6 6.0584 0.6038 -3.2203 18 6 4.8962 0.2601 -4.1540 19 6 6.3337 -0.0618 -4.5701 20 6 3.5195 -0.8720 -1.0214 21 6 1.9953 -0.7708 -1.1337 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.5634 1.9256 0.8330 26 1 1.7326 1.8608 -0.9376 27 1 3.7814 0.8567 1.0907 28 1 3.9099 2.3512 0.1310 29 1 3.8887 1.0355 -1.9560 30 1 6.0516 1.4494 -0.7449 31 1 5.8660 -0.1297 0.0552 32 1 8.2434 0.3585 -1.9423 33 1 7.7716 -0.8848 -0.7592 34 1 11.2127 -1.6863 -2.0489 35 1 6.3246 1.6555 -3.1141 36 1 4.2547 -0.5751 -3.8729 37 1 4.3980 1.0855 -4.6626 38 1 6.7807 0.5520 -5.3521 39 1 6.6381 -1.1084 -4.5624 40 1 3.9122 -1.4303 -1.8713 41 1 3.7827 -1.3842 -0.0960 42 1 1.5634 -1.7716 -1.1242 43 1 1.7327 -0.2707 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691571164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:51 Heat of formation + Delta-G solvation = 8.420885 kcal Electronic energy + Delta-G solvation = -19597.705827 eV Core-core repulsion = 16870.456680 eV Total energy + Delta-G solvation = -2727.249147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34526 -38.87966 -35.66110 -35.08257 -33.48586 -31.69569 -29.71843 -27.72921 -25.21419 -24.19325 -23.94045 -23.00379 -22.61707 -20.96480 -20.38895 -18.55112 -16.86884 -16.52238 -16.48884 -16.17764 -15.88230 -15.49059 -15.30664 -15.02592 -14.43810 -14.20185 -13.75451 -13.72257 -13.26944 -13.21485 -13.14406 -12.75950 -12.66197 -12.59443 -12.31340 -12.28195 -12.04181 -11.79421 -11.58939 -11.28692 -11.18143 -11.04538 -10.92028 -10.62946 -10.50829 -9.20903 -8.96642 -8.14216 -6.21672 1.41359 1.42330 1.55122 2.42715 3.06619 3.08501 3.17800 3.27521 3.86995 3.95625 4.02577 4.20636 4.28101 4.29389 4.41601 4.48489 4.53978 4.61900 4.66504 4.68646 4.73887 4.83802 4.85678 4.90924 4.96458 5.01424 5.05614 5.07005 5.13614 5.15870 5.22442 5.30730 5.38684 5.50460 5.52465 5.63062 5.79298 6.13613 6.20482 6.23630 6.46324 6.69668 6.94055 7.46184 8.96842 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.032175 B = 0.005033 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.040097 B = 5562.087361 C = 5648.422075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.559 5.559 3 C 0.063 3.937 4 C -0.109 4.109 5 C -0.069 4.069 6 C 0.066 3.934 7 N -0.507 5.507 8 C 0.210 3.790 9 C -0.500 4.500 10 H 0.070 0.930 11 C -0.001 4.001 12 N -0.940 5.940 13 Si 0.962 3.038 14 H -0.261 1.261 15 H -0.281 1.281 16 H -0.282 1.282 17 C 0.005 3.995 18 C -0.142 4.142 19 C -0.173 4.173 20 C -0.095 4.095 21 C 0.063 3.937 22 H 0.027 0.973 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.034 0.966 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.016 0.984 31 H 0.053 0.947 32 H -0.038 1.038 33 H -0.005 1.005 34 H 0.261 0.739 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.507 5.284 0.492 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.284 5.284 3 C -0.065 4.065 4 C -0.148 4.148 5 C -0.088 4.088 6 C -0.062 4.062 7 N -0.231 5.231 8 C 0.084 3.916 9 C -0.538 4.538 10 H 0.088 0.912 11 C -0.198 4.198 12 N -0.582 5.582 13 Si 0.788 3.212 14 H -0.185 1.185 15 H -0.207 1.207 16 H -0.208 1.208 17 C -0.105 4.105 18 C -0.180 4.180 19 C -0.210 4.210 20 C -0.133 4.133 21 C -0.065 4.065 22 H 0.046 0.954 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.034 0.966 31 H 0.071 0.929 32 H -0.020 1.020 33 H 0.013 0.987 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -18.428 4.608 0.897 19.017 hybrid contribution 1.347 0.537 -0.798 1.655 sum -17.082 5.145 0.098 17.840 Atomic orbital electron populations 1.22383 0.86204 1.02532 1.01062 1.61925 1.08587 1.14135 1.43785 1.22039 0.94707 0.88948 1.00793 1.21602 0.94891 1.00003 0.98264 1.21059 0.92196 0.96625 0.98894 1.22120 0.95563 0.95608 0.92922 1.61836 1.17136 1.42256 1.01885 1.19361 0.83274 0.93880 0.95117 1.21536 0.93084 1.18832 1.20347 0.91181 1.25862 0.96878 0.99203 0.97888 1.70103 1.02841 1.44413 1.40841 0.85432 0.78379 0.78736 0.78698 1.18457 1.20744 1.20830 1.22139 1.05486 0.93956 0.88880 1.23044 0.90553 1.03227 1.01166 1.23080 0.99121 1.02365 0.96433 1.21423 0.93811 0.96443 1.01575 1.22076 0.95039 0.98168 0.91211 0.95437 0.90990 0.90522 0.89592 0.94795 0.91989 0.90974 0.91121 0.96571 0.92855 1.02015 0.98698 0.93030 0.91717 0.88785 0.87221 0.89014 0.89141 0.91878 0.93239 0.90523 0.94822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.59 127.69 1.22 1.65 16 2 N -0.56 -12.25 4.91 -922.33 -4.53 -16.78 16 3 C 0.06 1.29 5.46 86.32 0.47 1.76 16 4 C -0.11 -2.62 5.38 30.64 0.16 -2.46 16 5 C -0.07 -1.98 2.09 -10.72 -0.02 -2.00 16 6 C 0.07 2.43 4.33 86.30 0.37 2.81 16 7 N -0.51 -21.85 4.08 -875.54 -3.57 -25.42 16 8 C 0.21 11.34 4.77 85.56 0.41 11.75 16 9 C -0.50 -28.10 7.81 25.60 0.20 -27.90 16 10 H 0.07 3.85 5.78 -2.91 -0.02 3.83 16 11 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 12 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 13 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 14 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 C 0.00 0.17 4.18 44.91 0.19 0.36 16 18 C -0.14 -4.35 9.18 30.62 0.28 -4.06 16 19 C -0.17 -6.48 9.48 30.62 0.29 -6.19 16 20 C -0.09 -2.74 5.25 30.69 0.16 -2.58 16 21 C 0.06 1.47 5.47 86.37 0.47 1.94 16 22 H 0.03 0.42 8.14 -2.38 -0.02 0.40 16 23 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 24 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.09 1.49 8.12 -2.39 -0.02 1.47 16 26 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.07 2.02 6.31 -2.38 -0.02 2.01 16 30 H 0.02 0.60 8.12 -2.39 -0.02 0.58 16 31 H 0.05 2.09 7.83 -2.38 -0.02 2.07 16 32 H -0.04 -2.27 7.99 -2.39 -0.02 -2.29 16 33 H -0.01 -0.29 7.73 -2.39 -0.02 -0.31 16 34 H 0.26 15.04 8.31 -92.72 -0.77 14.27 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.09 2.88 7.40 -2.39 -0.02 2.86 16 37 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.09 3.91 5.42 -2.39 -0.01 3.90 16 40 H 0.06 2.06 7.09 -2.39 -0.02 2.04 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 1.68 8.09 -2.38 -0.02 1.66 16 43 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -63.20 329.28 -0.17 -63.37 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.94 Total: 13.84 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 4.67 Total: -24.53 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -7.82 Total: -99.39 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -63.20 -0.17 -63.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691571164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.790 kcal (2) G-P(sol) polarization free energy of solvation -63.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds