Wall clock time and date at job start Mon Mar 30 2020 03:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47442 * 110.99924 * 2 1 4 4 C 1.54309 * 107.23563 * 123.25940 * 3 2 1 5 5 C 1.55140 * 103.01937 * 22.28187 * 4 3 2 6 6 C 1.47843 * 111.00099 * 120.84193 * 2 1 3 7 7 H 1.09009 * 110.37052 * 332.57790 * 6 2 1 8 8 C 1.52997 * 110.37628 * 94.80500 * 6 2 1 9 9 C 1.53005 * 109.47103 * 294.57778 * 8 6 2 10 10 N 1.46900 * 109.47195 * 185.92531 * 9 8 6 11 11 C 1.46894 * 110.99976 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47037 * 174.72463 * 11 10 9 13 13 C 1.50704 * 115.56053 * 39.79542 * 12 11 10 14 14 H 1.07999 * 119.99823 * 260.54672 * 13 12 11 15 15 C 1.37874 * 120.00230 * 80.54795 * 13 12 11 16 16 N 1.31519 * 119.99627 * 2.00094 * 15 13 12 17 17 Si 1.86796 * 120.00189 * 182.00471 * 15 13 12 18 18 H 1.48495 * 109.47148 * 59.99746 * 17 15 13 19 19 H 1.48501 * 109.47159 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46793 * 299.99667 * 17 15 13 21 21 C 1.52997 * 117.49967 * 254.10540 * 12 11 10 22 22 C 1.53004 * 117.49835 * 185.48059 * 12 11 10 23 23 H 1.09000 * 109.47175 * 302.64380 * 1 2 3 24 24 H 1.09004 * 109.47206 * 62.64006 * 1 2 3 25 25 H 1.09001 * 109.47016 * 182.64471 * 1 2 3 26 26 H 1.09005 * 109.88736 * 242.66872 * 3 2 1 27 27 H 1.08999 * 109.89005 * 3.68640 * 3 2 1 28 28 H 1.08996 * 110.71044 * 140.66441 * 4 3 2 29 29 H 1.09007 * 110.70820 * 263.72648 * 4 3 2 30 30 H 1.09000 * 110.98927 * 206.25752 * 5 4 3 31 31 H 1.09002 * 110.99292 * 82.43887 * 5 4 3 32 32 H 1.08999 * 109.47479 * 174.57633 * 8 6 2 33 33 H 1.09000 * 109.47180 * 54.57511 * 8 6 2 34 34 H 1.09001 * 109.46904 * 65.92673 * 9 8 6 35 35 H 1.08995 * 109.47317 * 305.92819 * 9 8 6 36 36 H 1.00900 * 110.99715 * 56.04702 * 10 9 8 37 37 H 1.08996 * 109.47306 * 54.72799 * 11 10 9 38 38 H 1.09000 * 109.47360 * 294.72226 * 11 10 9 39 39 H 0.97003 * 119.99603 * 185.02600 * 16 15 13 40 40 H 1.08996 * 117.49901 * 359.97438 * 21 12 11 41 41 H 1.09004 * 117.49890 * 145.02050 * 21 12 11 42 42 H 1.09000 * 117.49924 * 214.97507 * 22 12 11 43 43 H 1.08998 * 117.50114 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5137 1.2324 5 6 3.3047 0.0445 1.5437 6 6 1.9989 -0.7076 1.1850 7 1 1.2880 -0.6518 2.0096 8 6 2.3019 -2.1676 0.8424 9 6 0.9973 -2.8951 0.5111 10 7 1.2693 -4.3261 0.3209 11 6 0.0367 -5.0583 0.0012 12 6 0.3773 -6.5154 -0.3182 13 6 1.4387 -7.1404 0.5501 14 1 2.4548 -7.2145 0.1918 15 6 1.1126 -7.6176 1.8018 16 7 -0.1323 -7.5632 2.2225 17 14 2.4389 -8.3414 2.9002 18 1 3.4760 -7.3128 3.1674 19 1 1.8339 -8.7801 4.1834 20 1 3.0609 -9.5073 2.2226 21 6 0.3173 -6.9499 -1.7839 22 6 -0.7600 -7.4168 -0.8029 23 1 -0.3633 0.5543 0.8653 24 1 -0.3634 0.4723 -0.9127 25 1 -0.3633 -1.0266 0.0474 26 1 2.5696 1.5540 -0.9106 27 1 1.1754 2.0892 0.0659 28 1 3.8000 2.1034 0.9904 29 1 2.3753 1.9575 2.0685 30 1 3.5495 -0.0795 2.5986 31 1 4.1302 -0.2833 0.9118 32 1 2.7801 -2.6493 1.6952 33 1 2.9691 -2.2078 -0.0187 34 1 0.5727 -2.4813 -0.4036 35 1 0.2907 -2.7654 1.3307 36 1 1.7228 -4.7189 1.1322 37 1 -0.4445 -4.6000 -0.8627 38 1 -0.6394 -5.0221 0.8555 39 1 -0.3500 -7.8310 3.1290 40 1 0.0349 -6.1979 -2.5206 41 1 1.0457 -7.6879 -2.1203 42 1 -0.7405 -8.4619 -0.4940 43 1 -1.7508 -6.9718 -0.8947 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693931724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:26 Heat of formation + Delta-G solvation = 20.824894 kcal Electronic energy + Delta-G solvation = -19062.621999 eV Core-core repulsion = 16335.910730 eV Total energy + Delta-G solvation = -2726.711269 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.29036 -36.89129 -34.67870 -32.14304 -31.87281 -31.24251 -27.22087 -25.76601 -25.33496 -23.70041 -21.58244 -20.99342 -20.84241 -19.89218 -18.90168 -16.48734 -15.85530 -15.52584 -14.94903 -14.55895 -14.21701 -13.86847 -13.81730 -13.31958 -13.18420 -12.83583 -12.66736 -12.38411 -11.90273 -11.64873 -11.47578 -11.30134 -11.21940 -11.03951 -10.89652 -10.83845 -10.68866 -10.41210 -10.39693 -10.20444 -10.03036 -9.23996 -8.83625 -8.35664 -8.32242 -7.97544 -7.25517 -5.96929 -4.01299 3.33207 3.38354 3.41528 3.95225 4.44693 4.50706 4.60461 4.85319 5.01473 5.24867 5.30723 5.34286 5.37056 5.44139 5.50199 5.60598 5.63892 5.65644 5.77048 5.82007 5.89542 6.00508 6.05336 6.14400 6.19007 6.25831 6.49594 6.54224 6.64350 6.68573 6.85525 6.90160 7.00050 7.05759 7.10593 7.21653 7.51324 7.60919 7.94157 8.21032 8.51770 8.61356 9.01481 9.62361 11.11592 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024207 B = 0.004971 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.433210 B = 5631.174473 C = 6383.459279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.526 5.526 3 C 0.041 3.959 4 C -0.143 4.143 5 C -0.125 4.125 6 C 0.073 3.927 7 H 0.052 0.948 8 C -0.099 4.099 9 C 0.059 3.941 10 N -0.675 5.675 11 C 0.109 3.891 12 C 0.051 3.949 13 C -0.478 4.478 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.884 5.884 17 Si 0.886 3.114 18 H -0.276 1.276 19 H -0.290 1.290 20 H -0.277 1.277 21 C -0.207 4.207 22 C -0.164 4.164 23 H 0.022 0.978 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.009 0.991 36 H 0.350 0.650 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.258 0.742 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 16.188 -0.931 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.250 5.250 3 C -0.086 4.086 4 C -0.181 4.181 5 C -0.163 4.163 6 C -0.036 4.036 7 H 0.070 0.930 8 C -0.137 4.137 9 C -0.071 4.071 10 N -0.308 5.308 11 C -0.020 4.020 12 C 0.050 3.950 13 C -0.516 4.516 14 H 0.078 0.922 15 C -0.136 4.136 16 N -0.521 5.521 17 Si 0.714 3.286 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.244 4.244 22 C -0.202 4.202 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.027 0.973 36 H 0.170 0.830 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.940 15.890 -1.901 16.271 hybrid contribution -0.272 0.030 2.293 2.309 sum 2.668 15.920 0.392 16.147 Atomic orbital electron populations 1.22708 0.87796 1.02859 1.00120 1.63477 1.07789 1.13249 1.40531 1.22823 0.97748 0.89726 0.98351 1.22769 0.99835 0.97469 0.98050 1.22744 0.97872 0.94105 1.01570 1.22660 0.95209 0.94954 0.90742 0.93029 1.21484 0.98514 0.91796 1.01894 1.22011 0.95475 0.90633 0.98948 1.60402 1.25746 0.99983 1.44619 1.21312 0.89593 0.93961 0.97181 1.18796 0.95978 0.90136 0.90073 1.20390 0.94118 1.37278 0.99825 0.92171 1.24994 0.94979 0.95437 0.98182 1.70015 1.16832 1.48322 1.16978 0.86758 0.82152 0.79827 0.79868 1.20177 1.21561 1.20292 1.22960 1.03327 1.03537 0.94605 1.22542 0.92535 1.00696 1.04470 0.95971 0.91637 0.90322 0.90658 0.93081 0.90910 0.91819 0.90954 0.90298 0.91886 0.90529 0.91329 0.97307 0.82980 0.94553 0.95714 0.93227 0.91884 0.90828 0.90250 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 8.76 60.07 0.53 0.69 16 2 N -0.53 -6.56 4.94 -231.60 -1.14 -7.70 16 3 C 0.04 0.42 6.90 -2.84 -0.02 0.40 16 4 C -0.14 -1.30 6.94 -24.91 -0.17 -1.48 16 5 C -0.12 -1.31 6.50 -24.59 -0.16 -1.47 16 6 C 0.07 0.92 2.58 -66.19 -0.17 0.75 16 7 H 0.05 0.67 7.81 -51.92 -0.41 0.27 16 8 C -0.10 -1.47 5.20 -26.73 -0.14 -1.61 16 9 C 0.06 1.02 4.35 -3.82 -0.02 1.01 16 10 N -0.68 -14.27 6.26 -113.78 -0.71 -14.98 16 11 C 0.11 2.51 5.80 -3.83 -0.02 2.49 16 12 C 0.05 1.27 1.74 -155.66 -0.27 1.00 16 13 C -0.48 -12.88 7.46 -34.44 -0.26 -13.14 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.07 1.79 5.44 -17.82 -0.10 1.69 16 16 N -0.88 -24.88 12.92 55.43 0.72 -24.17 16 17 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.21 -4.75 9.88 -26.73 -0.26 -5.02 16 22 C -0.16 -3.99 9.51 -26.73 -0.25 -4.24 16 23 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 1.01 5.29 -51.93 -0.27 0.74 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.47 7.58 -51.93 -0.39 0.08 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.19 6.38 -51.93 -0.33 0.86 16 35 H 0.01 0.16 8.10 -51.93 -0.42 -0.26 16 36 H 0.35 7.91 7.71 -39.29 -0.30 7.61 16 37 H 0.04 0.79 7.93 -51.93 -0.41 0.38 16 38 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 40 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 41 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 42 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -27.84 336.82 -10.40 -38.24 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.00 Total: 6.55 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -1.32 Total: -18.93 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -1.14 Total: -46.85 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.84 -10.40 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693931724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.070 kcal (2) G-P(sol) polarization free energy of solvation -27.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds