Wall clock time and date at job start Mon Mar 30 2020 03:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47442 * 110.99924 * 2 1 4 4 C 1.54309 * 107.23563 * 123.25940 * 3 2 1 5 5 C 1.55140 * 103.01937 * 22.28187 * 4 3 2 6 6 C 1.47843 * 111.00099 * 120.84193 * 2 1 3 7 7 H 1.09009 * 110.37052 * 332.57790 * 6 2 1 8 8 C 1.52997 * 110.37628 * 94.80500 * 6 2 1 9 9 C 1.53005 * 109.47103 * 294.57778 * 8 6 2 10 10 N 1.46900 * 109.47195 * 185.92531 * 9 8 6 11 11 C 1.46894 * 110.99976 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47037 * 174.72463 * 11 10 9 13 13 C 1.50704 * 115.56053 * 39.79542 * 12 11 10 14 14 H 1.07999 * 119.99823 * 260.54672 * 13 12 11 15 15 C 1.37874 * 120.00230 * 80.54795 * 13 12 11 16 16 N 1.31519 * 119.99627 * 2.00094 * 15 13 12 17 17 Si 1.86796 * 120.00189 * 182.00471 * 15 13 12 18 18 H 1.48495 * 109.47148 * 59.99746 * 17 15 13 19 19 H 1.48501 * 109.47159 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46793 * 299.99667 * 17 15 13 21 21 C 1.52997 * 117.49967 * 254.10540 * 12 11 10 22 22 C 1.53004 * 117.49835 * 185.48059 * 12 11 10 23 23 H 1.09000 * 109.47175 * 302.64380 * 1 2 3 24 24 H 1.09004 * 109.47206 * 62.64006 * 1 2 3 25 25 H 1.09001 * 109.47016 * 182.64471 * 1 2 3 26 26 H 1.09005 * 109.88736 * 242.66872 * 3 2 1 27 27 H 1.08999 * 109.89005 * 3.68640 * 3 2 1 28 28 H 1.08996 * 110.71044 * 140.66441 * 4 3 2 29 29 H 1.09007 * 110.70820 * 263.72648 * 4 3 2 30 30 H 1.09000 * 110.98927 * 206.25752 * 5 4 3 31 31 H 1.09002 * 110.99292 * 82.43887 * 5 4 3 32 32 H 1.08999 * 109.47479 * 174.57633 * 8 6 2 33 33 H 1.09000 * 109.47180 * 54.57511 * 8 6 2 34 34 H 1.09001 * 109.46904 * 65.92673 * 9 8 6 35 35 H 1.08995 * 109.47317 * 305.92819 * 9 8 6 36 36 H 1.00900 * 110.99715 * 56.04702 * 10 9 8 37 37 H 1.08996 * 109.47306 * 54.72799 * 11 10 9 38 38 H 1.09000 * 109.47360 * 294.72226 * 11 10 9 39 39 H 0.97003 * 119.99603 * 185.02600 * 16 15 13 40 40 H 1.08996 * 117.49901 * 359.97438 * 21 12 11 41 41 H 1.09004 * 117.49890 * 145.02050 * 21 12 11 42 42 H 1.09000 * 117.49924 * 214.97507 * 22 12 11 43 43 H 1.08998 * 117.50114 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5137 1.2324 5 6 3.3047 0.0445 1.5437 6 6 1.9989 -0.7076 1.1850 7 1 1.2880 -0.6518 2.0096 8 6 2.3019 -2.1676 0.8424 9 6 0.9973 -2.8951 0.5111 10 7 1.2693 -4.3261 0.3209 11 6 0.0367 -5.0583 0.0012 12 6 0.3773 -6.5154 -0.3182 13 6 1.4387 -7.1404 0.5501 14 1 2.4548 -7.2145 0.1918 15 6 1.1126 -7.6176 1.8018 16 7 -0.1323 -7.5632 2.2225 17 14 2.4389 -8.3414 2.9002 18 1 3.4760 -7.3128 3.1674 19 1 1.8339 -8.7801 4.1834 20 1 3.0609 -9.5073 2.2226 21 6 0.3173 -6.9499 -1.7839 22 6 -0.7600 -7.4168 -0.8029 23 1 -0.3633 0.5543 0.8653 24 1 -0.3634 0.4723 -0.9127 25 1 -0.3633 -1.0266 0.0474 26 1 2.5696 1.5540 -0.9106 27 1 1.1754 2.0892 0.0659 28 1 3.8000 2.1034 0.9904 29 1 2.3753 1.9575 2.0685 30 1 3.5495 -0.0795 2.5986 31 1 4.1302 -0.2833 0.9118 32 1 2.7801 -2.6493 1.6952 33 1 2.9691 -2.2078 -0.0187 34 1 0.5727 -2.4813 -0.4036 35 1 0.2907 -2.7654 1.3307 36 1 1.7228 -4.7189 1.1322 37 1 -0.4445 -4.6000 -0.8627 38 1 -0.6394 -5.0221 0.8555 39 1 -0.3500 -7.8310 3.1290 40 1 0.0349 -6.1979 -2.5206 41 1 1.0457 -7.6879 -2.1203 42 1 -0.7405 -8.4619 -0.4940 43 1 -1.7508 -6.9718 -0.8947 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693931724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:25 Heat of formation + Delta-G solvation = 4.003452 kcal Electronic energy + Delta-G solvation = -19063.351431 eV Core-core repulsion = 16335.910730 eV Total energy + Delta-G solvation = -2727.440701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22847 -38.73348 -36.23131 -33.95127 -33.00432 -32.51124 -28.52533 -27.40250 -26.61685 -25.25167 -22.92113 -22.74115 -21.84476 -21.09992 -20.66680 -17.89853 -17.40502 -16.62970 -16.52353 -16.34902 -15.72844 -15.26889 -15.06622 -14.56902 -14.46950 -14.22524 -13.87264 -13.56414 -13.35075 -13.24790 -12.88342 -12.80738 -12.76992 -12.44505 -12.30757 -12.12186 -12.02081 -11.93899 -11.69629 -11.57804 -11.37305 -11.10018 -10.85532 -10.34966 -9.90417 -9.24125 -8.99762 -8.04605 -6.14277 1.45055 1.46147 1.53244 2.46859 3.04936 3.22417 3.37851 3.62421 3.76343 3.86677 4.09092 4.21020 4.29867 4.41362 4.44890 4.48806 4.51769 4.55349 4.63947 4.68725 4.76950 4.78589 4.92839 4.94042 4.99281 5.01300 5.02373 5.05290 5.12018 5.16465 5.26647 5.28255 5.36043 5.42994 5.62063 5.67120 5.82606 6.10033 6.17945 6.42121 6.59364 6.76018 6.93218 7.52159 9.03281 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024207 B = 0.004971 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.433210 B = 5631.174473 C = 6383.459279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.544 5.544 3 C 0.039 3.961 4 C -0.135 4.135 5 C -0.123 4.123 6 C 0.074 3.926 7 H 0.047 0.953 8 C -0.090 4.090 9 C 0.066 3.934 10 N -0.679 5.679 11 C 0.121 3.879 12 C 0.023 3.977 13 C -0.486 4.486 14 H 0.050 0.950 15 C 0.026 3.974 16 N -0.912 5.912 17 Si 0.944 3.056 18 H -0.267 1.267 19 H -0.290 1.290 20 H -0.277 1.277 21 C -0.187 4.187 22 C -0.168 4.168 23 H 0.029 0.971 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.004 0.996 36 H 0.340 0.660 37 H 0.049 0.951 38 H -0.002 1.002 39 H 0.257 0.743 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 17.707 -1.028 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.268 5.268 3 C -0.089 4.089 4 C -0.174 4.174 5 C -0.161 4.161 6 C -0.034 4.034 7 H 0.066 0.934 8 C -0.128 4.128 9 C -0.063 4.063 10 N -0.310 5.310 11 C -0.008 4.008 12 C 0.022 3.978 13 C -0.525 4.525 14 H 0.068 0.932 15 C -0.174 4.174 16 N -0.550 5.550 17 Si 0.771 3.229 18 H -0.192 1.192 19 H -0.215 1.215 20 H -0.203 1.203 21 C -0.224 4.224 22 C -0.206 4.206 23 H 0.048 0.952 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.023 0.977 36 H 0.158 0.842 37 H 0.067 0.933 38 H 0.016 0.984 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.872 17.426 -2.014 17.965 hybrid contribution -0.579 -0.436 2.261 2.375 sum 3.293 16.990 0.247 17.308 Atomic orbital electron populations 1.22670 0.87617 1.01991 1.01016 1.63430 1.08149 1.14821 1.40431 1.22890 0.98321 0.88589 0.99059 1.22751 1.00313 0.96587 0.97715 1.22737 0.96495 0.94806 1.02096 1.22574 0.96428 0.93663 0.90761 0.93450 1.21398 0.96775 0.93306 1.01353 1.22038 0.96845 0.88583 0.98865 1.60419 1.24773 1.01674 1.44119 1.21118 0.89857 0.93334 0.96519 1.19004 0.96140 0.91170 0.91456 1.20540 0.94108 1.37356 1.00456 0.93153 1.25601 0.96698 0.95748 0.99328 1.70124 1.18404 1.49344 1.17140 0.85827 0.79940 0.79138 0.78027 1.19186 1.21550 1.20251 1.22963 1.02086 1.03397 0.93922 1.22443 0.93323 0.99407 1.05431 0.95215 0.90596 0.92024 0.90414 0.92048 0.89236 0.91112 0.90025 0.90576 0.92127 0.91377 0.91147 0.97741 0.84173 0.93289 0.98374 0.93423 0.89578 0.90857 0.92460 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.76 127.69 1.12 1.46 16 2 N -0.54 -12.71 4.94 -886.65 -4.38 -17.10 16 3 C 0.04 0.70 6.90 86.64 0.60 1.30 16 4 C -0.14 -2.10 6.94 31.77 0.22 -1.88 16 5 C -0.12 -2.35 6.50 31.98 0.21 -2.14 16 6 C 0.07 1.79 2.58 45.38 0.12 1.90 16 7 H 0.05 1.18 7.81 -2.38 -0.02 1.16 16 8 C -0.09 -2.62 5.20 30.59 0.16 -2.47 16 9 C 0.07 2.27 4.35 86.30 0.38 2.64 16 10 N -0.68 -28.70 6.26 -513.90 -3.22 -31.92 16 11 C 0.12 5.61 5.80 86.31 0.50 6.11 16 12 C 0.02 1.15 1.74 -52.93 -0.09 1.06 16 13 C -0.49 -26.33 7.46 25.60 0.19 -26.14 16 14 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 15 C 0.03 1.39 5.44 84.65 0.46 1.85 16 16 N -0.91 -51.91 12.92 21.45 0.28 -51.63 16 17 Si 0.94 43.06 29.54 68.60 2.03 45.09 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 C -0.19 -8.35 9.88 30.59 0.30 -8.05 16 22 C -0.17 -8.15 9.51 30.60 0.29 -7.86 16 23 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.06 1.56 5.29 -2.39 -0.01 1.54 16 26 H 0.08 1.36 8.14 -2.38 -0.02 1.35 16 27 H 0.06 0.98 7.58 -2.39 -0.02 0.96 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.50 8.06 -2.39 -0.02 1.48 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.07 2.41 6.38 -2.39 -0.02 2.40 16 35 H 0.00 0.16 8.10 -2.39 -0.02 0.14 16 36 H 0.34 15.51 7.71 -89.69 -0.69 14.81 16 37 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 38 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 40 H 0.09 3.44 8.08 -2.39 -0.02 3.42 16 41 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 42 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -58.37 336.82 -0.59 -58.96 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.26 Total: 28.80 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 4.45 Total: -32.20 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -7.32 Total: -100.65 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -58.37 -0.59 -58.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693931724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.963 kcal (2) G-P(sol) polarization free energy of solvation -58.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds