Wall clock time and date at job start Mon Mar 30 2020 03:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47909 * 110.99598 * 2 1 4 4 C 1.53992 * 107.05417 * 214.15736 * 3 2 1 5 5 C 1.54599 * 105.14143 * 1.22150 * 4 3 2 6 6 C 1.48524 * 111.00266 * 242.60161 * 2 1 3 7 7 H 1.08997 * 110.66910 * 41.28079 * 6 2 1 8 8 C 1.52998 * 110.66793 * 278.15526 * 6 2 1 9 9 C 1.53001 * 109.47691 * 174.40884 * 8 6 2 10 10 N 1.46891 * 109.47522 * 185.05842 * 9 8 6 11 11 C 1.46905 * 110.99978 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46759 * 174.47170 * 11 10 9 13 13 C 1.50693 * 115.55092 * 65.07544 * 12 11 10 14 14 H 1.07996 * 120.00202 * 264.98554 * 13 12 11 15 15 C 1.37877 * 120.00261 * 84.98264 * 13 12 11 16 16 N 1.31519 * 120.00047 * 0.24148 * 15 13 12 17 17 Si 1.86808 * 120.00169 * 180.24588 * 15 13 12 18 18 H 1.48500 * 109.47037 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47175 * 119.99919 * 17 15 13 20 20 H 1.48494 * 109.46905 * 240.00029 * 17 15 13 21 21 C 1.52996 * 117.50028 * 279.39705 * 12 11 10 22 22 C 1.52998 * 117.49590 * 210.73983 * 12 11 10 23 23 H 1.08998 * 109.47308 * 57.28944 * 1 2 3 24 24 H 1.08997 * 109.46758 * 177.29017 * 1 2 3 25 25 H 1.08995 * 109.47165 * 297.28681 * 1 2 3 26 26 H 1.08997 * 109.91535 * 333.50289 * 3 2 1 27 27 H 1.08998 * 109.91779 * 94.60538 * 3 2 1 28 28 H 1.08996 * 110.31718 * 120.13707 * 4 3 2 29 29 H 1.09009 * 110.30565 * 242.30753 * 4 3 2 30 30 H 1.09001 * 110.72282 * 140.32101 * 5 4 3 31 31 H 1.09005 * 110.72399 * 263.60137 * 5 4 3 32 32 H 1.09002 * 109.47191 * 294.40810 * 8 6 2 33 33 H 1.09000 * 109.47210 * 54.40590 * 8 6 2 34 34 H 1.09000 * 109.46795 * 305.06066 * 9 8 6 35 35 H 1.09001 * 109.46887 * 65.05156 * 9 8 6 36 36 H 1.00899 * 110.99967 * 56.04457 * 10 9 8 37 37 H 1.08995 * 109.47195 * 294.47300 * 11 10 9 38 38 H 1.08995 * 109.46844 * 54.47781 * 11 10 9 39 39 H 0.96995 * 119.99857 * 185.02687 * 16 15 13 40 40 H 1.09003 * 117.49570 * 0.02562 * 21 12 11 41 41 H 1.09003 * 117.50075 * 145.02138 * 21 12 11 42 42 H 1.09001 * 117.50150 * 214.97858 * 22 12 11 43 43 H 1.09003 * 117.49997 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.2982 1.3660 -0.8266 5 6 3.4492 -0.0929 -1.3154 6 6 2.0014 -0.6381 -1.2310 7 1 1.4238 -0.3324 -2.1034 8 6 2.0053 -2.1616 -1.0911 9 6 2.4253 -2.7948 -2.4192 10 7 2.3128 -4.2561 -2.3223 11 6 2.7083 -4.8993 -3.5824 12 6 2.7107 -6.4186 -3.4007 13 6 1.3666 -7.0425 -3.1269 14 1 1.0555 -7.2302 -2.1099 15 6 0.5340 -7.3738 -4.1748 16 7 0.9147 -7.1495 -5.4135 17 14 -1.1351 -8.1409 -3.8350 18 1 -1.3230 -8.2884 -2.3694 19 1 -2.2026 -7.2680 -4.3861 20 1 -1.2062 -9.4768 -4.4795 21 6 3.9320 -7.0476 -2.7272 22 6 3.7092 -7.2277 -4.2309 23 1 -0.3634 0.5553 -0.8647 24 1 -0.3633 -1.0265 -0.0486 25 1 -0.3633 0.4711 0.9133 26 1 1.2758 2.0561 -0.4572 27 1 2.2089 1.6981 1.0215 28 1 3.2136 2.0429 -1.6767 29 1 4.1469 1.6456 -0.2023 30 1 3.8123 -0.1198 -2.3427 31 1 4.1116 -0.6539 -0.6561 32 1 2.7088 -2.4531 -0.3112 33 1 1.0055 -2.5047 -0.8252 34 1 1.7757 -2.4323 -3.2159 35 1 3.4576 -2.5236 -2.6405 36 1 1.3793 -4.5299 -2.0544 37 1 2.0012 -4.6282 -4.3663 38 1 3.7072 -4.5654 -3.8628 39 1 0.3015 -7.3143 -6.1467 40 1 4.7336 -6.3790 -2.4132 41 1 3.7633 -7.9130 -2.0863 42 1 3.3941 -8.2115 -4.5786 43 1 4.3641 -6.6778 -4.9068 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693931726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:28 Heat of formation + Delta-G solvation = 16.995415 kcal Electronic energy + Delta-G solvation = -18809.819428 eV Core-core repulsion = 16082.942101 eV Total energy + Delta-G solvation = -2726.877328 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.25829 -36.94328 -34.83565 -32.25216 -31.88524 -31.29800 -27.16416 -25.73571 -25.39770 -23.79439 -21.85846 -20.92182 -20.71642 -20.07419 -18.94357 -16.22215 -15.89640 -15.45384 -15.14629 -14.63544 -14.50171 -13.90852 -13.86106 -13.75107 -13.22514 -12.96241 -12.50244 -12.40408 -11.80960 -11.63827 -11.46238 -11.35505 -11.30237 -11.05370 -10.92314 -10.83156 -10.70357 -10.64748 -10.38597 -10.30748 -10.04974 -9.28996 -8.78379 -8.53415 -8.35892 -7.99988 -7.44086 -5.99214 -4.05784 3.28351 3.37509 3.41717 3.84791 4.42523 4.51342 4.60818 4.84185 4.92676 5.13947 5.25006 5.29855 5.31864 5.39214 5.46592 5.56569 5.58506 5.67092 5.72901 5.79457 5.83021 5.89902 5.96180 6.09043 6.12030 6.23025 6.43998 6.51148 6.54260 6.63528 6.84406 6.89876 6.90738 6.96269 6.97979 7.24403 7.57113 7.64272 7.91291 8.05672 8.33497 8.54548 8.98557 9.60145 11.08942 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025316 B = 0.004471 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.750682 B = 6261.041379 C = 6995.035713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.519 5.519 3 C 0.036 3.964 4 C -0.133 4.133 5 C -0.119 4.119 6 C 0.066 3.934 7 H 0.051 0.949 8 C -0.098 4.098 9 C 0.061 3.939 10 N -0.681 5.681 11 C 0.107 3.893 12 C 0.047 3.953 13 C -0.489 4.489 14 H 0.060 0.940 15 C 0.068 3.932 16 N -0.881 5.881 17 Si 0.886 3.114 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.285 1.285 21 C -0.200 4.200 22 C -0.159 4.159 23 H 0.025 0.975 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.062 0.938 36 H 0.346 0.654 37 H 0.030 0.970 38 H 0.037 0.963 39 H 0.257 0.743 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 15.584 7.085 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.243 5.243 3 C -0.092 4.092 4 C -0.171 4.171 5 C -0.157 4.157 6 C -0.043 4.043 7 H 0.069 0.931 8 C -0.136 4.136 9 C -0.070 4.070 10 N -0.312 5.312 11 C -0.022 4.022 12 C 0.046 3.954 13 C -0.527 4.527 14 H 0.078 0.922 15 C -0.134 4.134 16 N -0.519 5.519 17 Si 0.714 3.286 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.238 4.238 22 C -0.197 4.197 23 H 0.043 0.957 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.081 0.919 36 H 0.164 0.836 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.693 15.151 7.648 17.184 hybrid contribution -2.088 0.307 -1.339 2.500 sum 0.604 15.458 6.309 16.707 Atomic orbital electron populations 1.22524 0.87967 1.02422 1.00409 1.64661 1.07982 1.14280 1.37352 1.22848 0.95885 0.90032 1.00471 1.22405 0.97646 0.97584 0.99434 1.22554 0.96507 0.95036 1.01574 1.22826 0.95085 0.95605 0.90754 0.93117 1.21425 1.02285 0.91525 0.98396 1.21877 1.00010 0.89937 0.95148 1.60418 1.32791 1.04232 1.33752 1.21416 0.97029 0.95016 0.88737 1.18750 0.89588 0.89007 0.98014 1.20533 0.99871 1.39706 0.92577 0.92161 1.25009 0.98021 0.95280 0.95116 1.70023 1.34762 1.48821 0.98270 0.86634 0.84348 0.79131 0.78504 1.19632 1.21186 1.21091 1.22864 1.02433 1.02978 0.95504 1.22509 1.03669 1.02202 0.91297 0.95653 0.90889 0.91535 0.94108 0.90547 0.91742 0.91059 0.90996 0.90330 0.90528 0.92062 0.96568 0.91933 0.83552 0.95141 0.94445 0.93266 0.91740 0.90959 0.90175 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.33 60.07 0.56 0.72 16 2 N -0.52 -6.08 5.25 -230.85 -1.21 -7.29 16 3 C 0.04 0.35 6.70 -2.75 -0.02 0.33 16 4 C -0.13 -1.21 6.93 -25.37 -0.18 -1.39 16 5 C -0.12 -1.28 6.00 -24.87 -0.15 -1.43 16 6 C 0.07 0.80 2.30 -65.80 -0.15 0.65 16 7 H 0.05 0.64 8.00 -51.93 -0.42 0.22 16 8 C -0.10 -1.37 5.23 -26.73 -0.14 -1.51 16 9 C 0.06 0.98 5.51 -3.83 -0.02 0.96 16 10 N -0.68 -13.49 6.47 -113.78 -0.74 -14.23 16 11 C 0.11 2.42 5.54 -3.82 -0.02 2.40 16 12 C 0.05 1.17 1.61 -155.66 -0.25 0.92 16 13 C -0.49 -13.20 8.33 -34.44 -0.29 -13.49 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.07 1.86 5.42 -17.82 -0.10 1.76 16 16 N -0.88 -24.95 12.75 55.43 0.71 -24.24 16 17 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.20 -4.58 9.96 -26.70 -0.27 -4.85 16 22 C -0.16 -3.85 9.26 -26.70 -0.25 -4.10 16 23 H 0.02 0.25 7.99 -51.93 -0.41 -0.16 16 24 H 0.07 0.80 7.28 -51.93 -0.38 0.42 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.37 7.69 -51.93 -0.40 -0.03 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.89 7.94 -51.93 -0.41 0.47 16 32 H 0.08 1.13 7.99 -51.93 -0.41 0.72 16 33 H 0.06 0.89 7.28 -51.93 -0.38 0.51 16 34 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.98 7.83 -51.93 -0.41 0.57 16 36 H 0.35 7.16 8.30 -39.29 -0.33 6.84 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -27.99 341.51 -10.54 -38.53 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -8.16 Total: 5.13 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -1.26 Total: -19.02 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -1.24 Total: -45.76 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.99 -10.54 -38.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693931726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.521 kcal (2) G-P(sol) polarization free energy of solvation -27.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds