Wall clock time and date at job start Mon Mar 30 2020 03:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47909 * 110.99598 * 2 1 4 4 C 1.53992 * 107.05417 * 214.15736 * 3 2 1 5 5 C 1.54599 * 105.14143 * 1.22150 * 4 3 2 6 6 C 1.48524 * 111.00266 * 242.60161 * 2 1 3 7 7 H 1.08997 * 110.66910 * 41.28079 * 6 2 1 8 8 C 1.52998 * 110.66793 * 278.15526 * 6 2 1 9 9 C 1.53001 * 109.47691 * 174.40884 * 8 6 2 10 10 N 1.46891 * 109.47522 * 185.05842 * 9 8 6 11 11 C 1.46905 * 110.99978 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46759 * 174.47170 * 11 10 9 13 13 C 1.50693 * 115.55092 * 65.07544 * 12 11 10 14 14 H 1.07996 * 120.00202 * 264.98554 * 13 12 11 15 15 C 1.37877 * 120.00261 * 84.98264 * 13 12 11 16 16 N 1.31519 * 120.00047 * 0.24148 * 15 13 12 17 17 Si 1.86808 * 120.00169 * 180.24588 * 15 13 12 18 18 H 1.48500 * 109.47037 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47175 * 119.99919 * 17 15 13 20 20 H 1.48494 * 109.46905 * 240.00029 * 17 15 13 21 21 C 1.52996 * 117.50028 * 279.39705 * 12 11 10 22 22 C 1.52998 * 117.49590 * 210.73983 * 12 11 10 23 23 H 1.08998 * 109.47308 * 57.28944 * 1 2 3 24 24 H 1.08997 * 109.46758 * 177.29017 * 1 2 3 25 25 H 1.08995 * 109.47165 * 297.28681 * 1 2 3 26 26 H 1.08997 * 109.91535 * 333.50289 * 3 2 1 27 27 H 1.08998 * 109.91779 * 94.60538 * 3 2 1 28 28 H 1.08996 * 110.31718 * 120.13707 * 4 3 2 29 29 H 1.09009 * 110.30565 * 242.30753 * 4 3 2 30 30 H 1.09001 * 110.72282 * 140.32101 * 5 4 3 31 31 H 1.09005 * 110.72399 * 263.60137 * 5 4 3 32 32 H 1.09002 * 109.47191 * 294.40810 * 8 6 2 33 33 H 1.09000 * 109.47210 * 54.40590 * 8 6 2 34 34 H 1.09000 * 109.46795 * 305.06066 * 9 8 6 35 35 H 1.09001 * 109.46887 * 65.05156 * 9 8 6 36 36 H 1.00899 * 110.99967 * 56.04457 * 10 9 8 37 37 H 1.08995 * 109.47195 * 294.47300 * 11 10 9 38 38 H 1.08995 * 109.46844 * 54.47781 * 11 10 9 39 39 H 0.96995 * 119.99857 * 185.02687 * 16 15 13 40 40 H 1.09003 * 117.49570 * 0.02562 * 21 12 11 41 41 H 1.09003 * 117.50075 * 145.02138 * 21 12 11 42 42 H 1.09001 * 117.50150 * 214.97858 * 22 12 11 43 43 H 1.09003 * 117.49997 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.2982 1.3660 -0.8266 5 6 3.4492 -0.0929 -1.3154 6 6 2.0014 -0.6381 -1.2310 7 1 1.4238 -0.3324 -2.1034 8 6 2.0053 -2.1616 -1.0911 9 6 2.4253 -2.7948 -2.4192 10 7 2.3128 -4.2561 -2.3223 11 6 2.7083 -4.8993 -3.5824 12 6 2.7107 -6.4186 -3.4007 13 6 1.3666 -7.0425 -3.1269 14 1 1.0555 -7.2302 -2.1099 15 6 0.5340 -7.3738 -4.1748 16 7 0.9147 -7.1495 -5.4135 17 14 -1.1351 -8.1409 -3.8350 18 1 -1.3230 -8.2884 -2.3694 19 1 -2.2026 -7.2680 -4.3861 20 1 -1.2062 -9.4768 -4.4795 21 6 3.9320 -7.0476 -2.7272 22 6 3.7092 -7.2277 -4.2309 23 1 -0.3634 0.5553 -0.8647 24 1 -0.3633 -1.0265 -0.0486 25 1 -0.3633 0.4711 0.9133 26 1 1.2758 2.0561 -0.4572 27 1 2.2089 1.6981 1.0215 28 1 3.2136 2.0429 -1.6767 29 1 4.1469 1.6456 -0.2023 30 1 3.8123 -0.1198 -2.3427 31 1 4.1116 -0.6539 -0.6561 32 1 2.7088 -2.4531 -0.3112 33 1 1.0055 -2.5047 -0.8252 34 1 1.7757 -2.4323 -3.2159 35 1 3.4576 -2.5236 -2.6405 36 1 1.3793 -4.5299 -2.0544 37 1 2.0012 -4.6282 -4.3663 38 1 3.7072 -4.5654 -3.8628 39 1 0.3015 -7.3143 -6.1467 40 1 4.7336 -6.3790 -2.4132 41 1 3.7633 -7.9130 -2.0863 42 1 3.3941 -8.2115 -4.5786 43 1 4.3641 -6.6778 -4.9068 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693931726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:28 Heat of formation + Delta-G solvation = -0.087921 kcal Electronic energy + Delta-G solvation = -18810.560217 eV Core-core repulsion = 16082.942101 eV Total energy + Delta-G solvation = -2727.618117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15388 -38.75016 -36.34067 -33.95589 -33.09207 -32.52137 -28.45144 -27.44072 -26.51814 -25.28266 -23.16833 -22.71182 -21.61249 -21.19820 -20.76446 -17.91417 -17.17164 -16.63917 -16.42287 -16.40103 -15.73081 -15.55639 -15.11026 -14.74423 -14.57595 -14.40577 -13.93207 -13.41211 -13.27869 -13.15355 -12.92477 -12.84480 -12.54932 -12.46980 -12.28631 -12.12865 -12.07648 -12.02902 -11.90193 -11.46413 -11.38998 -11.17830 -10.79615 -10.36036 -9.90933 -9.39840 -9.10297 -8.07556 -6.19312 1.39500 1.43509 1.53836 2.43872 2.92729 3.20902 3.40645 3.67704 3.76236 3.84357 4.08956 4.18408 4.26320 4.41204 4.43629 4.47336 4.52993 4.55603 4.64073 4.69641 4.71821 4.76261 4.86768 4.94298 4.98311 5.02001 5.03979 5.06110 5.09526 5.17267 5.28897 5.31280 5.33320 5.38295 5.68257 5.70960 5.81404 5.97672 6.10264 6.38542 6.49830 6.66051 6.90631 7.49215 9.00291 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025316 B = 0.004471 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.750682 B = 6261.041379 C = 6995.035713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.534 5.534 3 C 0.034 3.966 4 C -0.128 4.128 5 C -0.119 4.119 6 C 0.068 3.932 7 H 0.047 0.953 8 C -0.086 4.086 9 C 0.065 3.935 10 N -0.681 5.681 11 C 0.121 3.879 12 C 0.022 3.978 13 C -0.499 4.499 14 H 0.052 0.948 15 C 0.024 3.976 16 N -0.910 5.910 17 Si 0.947 3.053 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.285 1.285 21 C -0.179 4.179 22 C -0.164 4.164 23 H 0.028 0.972 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.013 0.987 35 H 0.071 0.929 36 H 0.339 0.661 37 H 0.000 1.000 38 H 0.048 0.952 39 H 0.258 0.742 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 16.863 8.016 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.258 5.258 3 C -0.094 4.094 4 C -0.166 4.166 5 C -0.158 4.158 6 C -0.041 4.041 7 H 0.065 0.935 8 C -0.124 4.124 9 C -0.065 4.065 10 N -0.311 5.311 11 C -0.008 4.008 12 C 0.021 3.979 13 C -0.537 4.537 14 H 0.070 0.930 15 C -0.176 4.176 16 N -0.548 5.548 17 Si 0.773 3.227 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.211 1.211 21 C -0.216 4.216 22 C -0.202 4.202 23 H 0.047 0.953 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.031 0.969 35 H 0.090 0.910 36 H 0.156 0.844 37 H 0.018 0.982 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.880 16.442 8.597 18.776 hybrid contribution -2.121 -0.082 -1.596 2.655 sum 0.759 16.360 7.001 17.811 Atomic orbital electron populations 1.22537 0.87509 1.02035 1.01245 1.64635 1.08611 1.15634 1.36908 1.22924 0.96274 0.88987 1.01210 1.22407 0.97761 0.96530 0.99899 1.22554 0.95258 0.96103 1.01835 1.22725 0.96227 0.94146 0.90994 0.93541 1.21272 1.01417 0.93010 0.96720 1.21917 1.00539 0.87708 0.96297 1.60421 1.32239 1.06386 1.32056 1.21157 0.96782 0.93905 0.88998 1.18931 0.89423 0.90281 0.99215 1.20739 1.01086 1.39714 0.92195 0.92984 1.25660 1.01222 0.95760 0.94931 1.70125 1.35851 1.49927 0.98924 0.85680 0.80488 0.78082 0.78446 1.19090 1.20765 1.21143 1.22839 1.01733 1.02718 0.94281 1.22417 1.04112 1.01127 0.92533 0.95301 0.91874 0.90244 0.93391 0.89778 0.90688 0.89886 0.90570 0.90898 0.91198 0.92886 0.96916 0.91014 0.84352 0.98155 0.93345 0.93342 0.89606 0.91101 0.92566 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.33 127.69 1.19 1.49 16 2 N -0.53 -11.66 5.25 -884.28 -4.64 -16.30 16 3 C 0.03 0.58 6.70 86.44 0.58 1.16 16 4 C -0.13 -2.02 6.93 31.47 0.22 -1.80 16 5 C -0.12 -2.35 6.00 31.80 0.19 -2.16 16 6 C 0.07 1.56 2.30 45.26 0.10 1.66 16 7 H 0.05 1.11 8.00 -2.39 -0.02 1.09 16 8 C -0.09 -2.34 5.23 30.59 0.16 -2.18 16 9 C 0.07 2.05 5.51 86.31 0.48 2.53 16 10 N -0.68 -26.68 6.47 -513.89 -3.32 -30.01 16 11 C 0.12 5.46 5.54 86.30 0.48 5.93 16 12 C 0.02 1.10 1.61 -52.93 -0.09 1.01 16 13 C -0.50 -27.08 8.33 25.60 0.21 -26.87 16 14 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 15 C 0.02 1.31 5.42 84.65 0.46 1.77 16 16 N -0.91 -52.07 12.75 21.45 0.27 -51.79 16 17 Si 0.95 43.34 29.54 68.60 2.03 45.36 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 21 C -0.18 -7.95 9.96 30.62 0.30 -7.64 16 22 C -0.16 -7.93 9.26 30.62 0.28 -7.64 16 23 H 0.03 0.54 7.99 -2.39 -0.02 0.52 16 24 H 0.06 1.35 7.28 -2.39 -0.02 1.33 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 0.76 7.69 -2.39 -0.02 0.74 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.52 7.94 -2.38 -0.02 1.50 16 32 H 0.07 2.01 7.99 -2.39 -0.02 1.99 16 33 H 0.05 1.52 7.28 -2.39 -0.02 1.50 16 34 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.07 2.14 7.83 -2.39 -0.02 2.12 16 36 H 0.34 14.08 8.30 -89.69 -0.74 13.33 16 37 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.05 2.04 8.08 -2.39 -0.02 2.02 16 39 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 40 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 41 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -58.48 341.51 -0.89 -59.37 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.20 Total: 26.10 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 4.57 Total: -32.74 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -7.69 Total: -98.10 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -58.48 -0.89 -59.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693931726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.281 kcal (2) G-P(sol) polarization free energy of solvation -58.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds