Wall clock time and date at job start Mon Mar 30 2020 03:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46838 * 111.00053 * 2 1 4 4 C 1.53043 * 109.52524 * 185.84082 * 3 2 1 5 5 C 1.53118 * 109.27319 * 300.82338 * 4 3 2 6 6 N 1.46507 * 109.51958 * 177.56162 * 5 4 3 7 7 C 1.36935 * 119.99685 * 296.89554 * 6 5 4 8 8 H 1.07995 * 120.00572 * 240.53740 * 7 6 5 9 9 C 1.38811 * 119.99971 * 60.53108 * 7 6 5 10 10 N 1.31625 * 120.00103 * 34.23321 * 9 7 6 11 11 Si 1.86798 * 120.00333 * 214.23217 * 9 7 6 12 12 H 1.48502 * 109.47272 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47533 * 120.00277 * 11 9 7 14 14 H 1.48498 * 109.47103 * 240.00197 * 11 9 7 15 15 C 1.46494 * 120.00283 * 116.89908 * 6 5 4 16 16 C 1.54274 * 110.03271 * 127.99451 * 15 6 5 17 17 C 1.54966 * 104.15554 * 95.75480 * 16 15 6 18 18 C 1.54884 * 102.78008 * 37.88885 * 17 16 15 19 19 C 1.53875 * 110.03226 * 245.21379 * 15 6 5 20 20 C 1.53118 * 109.16545 * 57.65385 * 5 4 3 21 21 C 1.46852 * 110.99837 * 124.21147 * 2 1 3 22 22 H 1.09006 * 109.47460 * 60.00035 * 1 2 3 23 23 H 1.08999 * 109.47704 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47277 * 300.00100 * 1 2 3 25 25 H 1.08999 * 109.46658 * 65.82147 * 3 2 1 26 26 H 1.09004 * 109.45916 * 305.85224 * 3 2 1 27 27 H 1.08994 * 109.50333 * 180.87834 * 4 3 2 28 28 H 1.09001 * 109.53473 * 60.77750 * 4 3 2 29 29 H 1.09008 * 109.52446 * 297.67982 * 5 4 3 30 30 H 0.96996 * 120.00178 * 179.27770 * 10 9 7 31 31 H 1.09006 * 110.01798 * 6.60880 * 15 6 5 32 32 H 1.08992 * 110.48582 * 214.40267 * 16 15 6 33 33 H 1.08996 * 110.48310 * 337.04734 * 16 15 6 34 34 H 1.09002 * 110.72026 * 279.57205 * 17 16 15 35 35 H 1.08997 * 110.91930 * 156.30026 * 17 16 15 36 36 H 1.08995 * 110.48726 * 203.40259 * 18 17 16 37 37 H 1.09007 * 110.59693 * 80.81497 * 18 17 16 38 38 H 1.08998 * 110.03256 * 359.95029 * 19 15 6 39 39 H 1.08996 * 110.03201 * 121.38322 * 19 15 6 40 40 H 1.08998 * 109.50314 * 62.28417 * 20 5 4 41 41 H 1.08997 * 109.50405 * 182.40630 * 20 5 4 42 42 H 1.08996 * 109.46266 * 294.17659 * 21 2 1 43 43 H 1.08999 * 109.46099 * 54.14340 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1187 0.5368 1.0143 6 7 5.5716 0.4488 0.8479 7 6 6.0984 -0.2013 -0.2361 8 1 6.7367 -1.0606 -0.0929 9 6 5.8118 0.2441 -1.5192 10 7 5.6580 1.5307 -1.7503 11 14 5.6444 -0.9825 -2.9181 12 1 5.8620 -2.3571 -2.4000 13 1 4.2832 -0.8832 -3.5034 14 1 6.6557 -0.6823 -3.9633 15 6 6.4609 1.0561 1.8411 16 6 7.4991 0.0219 2.3234 17 6 8.7440 0.2951 1.4420 18 6 8.7455 1.8392 1.3204 19 6 7.2529 2.2110 1.2033 20 6 3.5181 -0.8716 1.0208 21 6 1.9952 -0.7708 1.1338 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.7324 1.8608 0.9375 26 1 1.5634 1.9256 -0.8330 27 1 3.9099 2.3511 -0.1311 28 1 3.7819 0.8570 -1.0907 29 1 3.8896 1.0359 1.9560 30 1 5.4682 1.8428 -2.6488 31 1 5.8798 1.4240 2.6867 32 1 7.7347 0.1802 3.3757 33 1 7.1314 -0.9915 2.1620 34 1 8.6323 -0.1694 0.4622 35 1 9.6524 -0.0547 1.9323 36 1 9.2875 2.1510 0.4277 37 1 9.1831 2.2934 2.2095 38 1 6.9762 2.3190 0.1546 39 1 7.0561 3.1394 1.7394 40 1 3.7813 -1.3837 0.0953 41 1 3.9098 -1.4304 1.8707 42 1 1.7324 -0.2710 2.0660 43 1 1.5633 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704895361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:21 Heat of formation + Delta-G solvation = 20.360293 kcal Electronic energy + Delta-G solvation = -20631.009934 eV Core-core repulsion = 17904.278519 eV Total energy + Delta-G solvation = -2726.731416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.54258 -37.18105 -34.32753 -31.73289 -30.26508 -29.88053 -27.57152 -26.67239 -25.60620 -23.34716 -22.13678 -21.24626 -19.58078 -19.07161 -18.47177 -16.31299 -15.09305 -15.03620 -14.56912 -14.36100 -14.20158 -13.96876 -13.47533 -12.94023 -12.71979 -12.36512 -12.03741 -11.91425 -11.73502 -11.44638 -11.10747 -10.92174 -10.68740 -10.51414 -10.33095 -10.18984 -10.13720 -10.01685 -9.97753 -9.81959 -9.65589 -9.43427 -9.28281 -9.19153 -7.90918 -7.71179 -6.29426 -5.58514 -3.46805 3.39537 3.51448 3.55523 4.48455 4.53265 5.21979 5.36161 5.47027 5.65233 5.69173 5.72751 5.74511 5.82909 5.92834 5.99762 6.05958 6.11526 6.27917 6.34152 6.37249 6.54190 6.56628 6.58697 6.63855 6.67032 6.72233 6.80685 6.90469 6.94353 7.12171 7.17056 7.19106 7.30369 7.35679 7.46407 7.65313 7.77175 7.87304 7.93690 8.04256 8.83544 9.36210 9.84751 10.65290 11.12861 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019946 B = 0.009385 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.446019 B = 2982.908864 C = 3658.720187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.540 5.540 3 C 0.054 3.946 4 C -0.117 4.117 5 C 0.190 3.810 6 N -0.574 5.574 7 C -0.276 4.276 8 H 0.048 0.952 9 C 0.059 3.941 10 N -0.847 5.847 11 Si 0.861 3.139 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.293 1.293 15 C 0.173 3.827 16 C -0.125 4.125 17 C -0.113 4.113 18 C -0.114 4.114 19 C -0.141 4.141 20 C -0.118 4.118 21 C 0.061 3.939 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.016 0.984 25 H 0.015 0.985 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.253 0.747 31 H 0.035 0.965 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.048 0.952 37 H 0.039 0.961 38 H 0.112 0.888 39 H 0.027 0.973 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.020 0.980 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.944 -0.655 5.393 6.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.074 4.074 4 C -0.157 4.157 5 C 0.084 3.916 6 N -0.295 5.295 7 C -0.406 4.406 8 H 0.065 0.935 9 C -0.146 4.146 10 N -0.484 5.484 11 Si 0.689 3.311 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.220 1.220 15 C 0.066 3.934 16 C -0.164 4.164 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.180 4.180 20 C -0.157 4.157 21 C -0.067 4.067 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.130 0.870 39 H 0.046 0.954 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.817 -0.740 4.836 6.205 hybrid contribution -0.541 -0.056 -0.145 0.562 sum -4.358 -0.796 4.691 6.452 Atomic orbital electron populations 1.22315 0.88891 1.01132 0.99818 1.61915 1.06040 1.14878 1.43689 1.22322 0.99169 0.87562 0.98334 1.22333 0.88743 1.01447 1.03146 1.20361 0.84761 0.92214 0.94295 1.43806 0.98327 1.63377 1.23965 1.18344 1.31277 1.07777 0.83158 0.93476 1.25404 0.97077 0.94086 0.98044 1.70299 1.45182 1.12463 1.20420 0.86989 0.77764 0.83390 0.83000 1.19794 1.20857 1.21962 1.21073 0.90893 0.90842 0.90572 1.22637 0.96737 1.00711 0.96351 1.22400 0.95955 0.95884 1.00791 1.22194 0.97974 0.96180 0.98890 1.22842 0.93446 0.96576 1.05137 1.21928 0.91169 1.00305 1.02295 1.22107 0.97473 0.96738 0.90405 0.91998 0.92082 0.96555 0.96687 0.92306 0.91880 0.88400 0.95186 0.93666 0.94680 0.94208 0.91882 0.90377 0.94416 0.93275 0.94193 0.87010 0.95369 0.90445 0.93014 0.96186 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.59 60.06 0.58 0.97 16 2 N -0.54 -9.78 4.91 -242.96 -1.19 -10.97 16 3 C 0.05 1.03 5.46 -3.84 -0.02 1.01 16 4 C -0.12 -2.59 4.07 -26.65 -0.11 -2.70 16 5 C 0.19 4.10 2.72 -67.80 -0.18 3.92 16 6 N -0.57 -13.23 2.18 -156.74 -0.34 -13.58 16 7 C -0.28 -6.93 5.64 -15.06 -0.09 -7.01 16 8 H 0.05 1.26 7.06 -52.49 -0.37 0.89 16 9 C 0.06 1.51 3.37 -17.43 -0.06 1.45 16 10 N -0.85 -22.20 9.91 55.49 0.55 -21.65 16 11 Si 0.86 20.64 29.65 -169.99 -5.04 15.60 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 C 0.17 3.67 3.49 -66.81 -0.23 3.44 16 16 C -0.13 -2.43 5.97 -25.03 -0.15 -2.58 16 17 C -0.11 -2.16 6.56 -24.70 -0.16 -2.32 16 18 C -0.11 -2.18 6.83 -25.07 -0.17 -2.35 16 19 C -0.14 -3.01 6.33 -25.61 -0.16 -3.17 16 20 C -0.12 -2.35 5.33 -26.65 -0.14 -2.49 16 21 C 0.06 1.06 5.46 -3.83 -0.02 1.04 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 27 H 0.06 1.51 7.86 -51.93 -0.41 1.10 16 28 H 0.10 2.47 4.92 -51.93 -0.26 2.21 16 29 H 0.03 0.63 7.58 -51.92 -0.39 0.24 16 30 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 31 H 0.03 0.72 7.60 -51.93 -0.39 0.32 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.29 7.62 -51.93 -0.40 0.90 16 34 H 0.08 1.67 6.81 -51.93 -0.35 1.32 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.11 2.81 6.27 -51.93 -0.33 2.48 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.75 7.51 -51.93 -0.39 1.36 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 LS Contribution 316.07 15.07 4.76 4.76 Total: -1.00 -25.46 316.07 -10.10 -35.56 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.91 Total: 1.07 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.92 Total: -10.80 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.98 Total: -46.20 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.04 Total: 15.60 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -25.46 -10.10 -35.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704895361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.916 kcal (2) G-P(sol) polarization free energy of solvation -25.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds