Wall clock time and date at job start Mon Mar 30 2020 03:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46838 * 111.00053 * 2 1 4 4 C 1.53043 * 109.52524 * 185.84082 * 3 2 1 5 5 C 1.53118 * 109.27319 * 300.82338 * 4 3 2 6 6 N 1.46507 * 109.51958 * 177.56162 * 5 4 3 7 7 C 1.36935 * 119.99685 * 296.89554 * 6 5 4 8 8 H 1.07995 * 120.00572 * 240.53740 * 7 6 5 9 9 C 1.38811 * 119.99971 * 60.53108 * 7 6 5 10 10 N 1.31625 * 120.00103 * 34.23321 * 9 7 6 11 11 Si 1.86798 * 120.00333 * 214.23217 * 9 7 6 12 12 H 1.48502 * 109.47272 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47533 * 120.00277 * 11 9 7 14 14 H 1.48498 * 109.47103 * 240.00197 * 11 9 7 15 15 C 1.46494 * 120.00283 * 116.89908 * 6 5 4 16 16 C 1.54274 * 110.03271 * 127.99451 * 15 6 5 17 17 C 1.54966 * 104.15554 * 95.75480 * 16 15 6 18 18 C 1.54884 * 102.78008 * 37.88885 * 17 16 15 19 19 C 1.53875 * 110.03226 * 245.21379 * 15 6 5 20 20 C 1.53118 * 109.16545 * 57.65385 * 5 4 3 21 21 C 1.46852 * 110.99837 * 124.21147 * 2 1 3 22 22 H 1.09006 * 109.47460 * 60.00035 * 1 2 3 23 23 H 1.08999 * 109.47704 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47277 * 300.00100 * 1 2 3 25 25 H 1.08999 * 109.46658 * 65.82147 * 3 2 1 26 26 H 1.09004 * 109.45916 * 305.85224 * 3 2 1 27 27 H 1.08994 * 109.50333 * 180.87834 * 4 3 2 28 28 H 1.09001 * 109.53473 * 60.77750 * 4 3 2 29 29 H 1.09008 * 109.52446 * 297.67982 * 5 4 3 30 30 H 0.96996 * 120.00178 * 179.27770 * 10 9 7 31 31 H 1.09006 * 110.01798 * 6.60880 * 15 6 5 32 32 H 1.08992 * 110.48582 * 214.40267 * 16 15 6 33 33 H 1.08996 * 110.48310 * 337.04734 * 16 15 6 34 34 H 1.09002 * 110.72026 * 279.57205 * 17 16 15 35 35 H 1.08997 * 110.91930 * 156.30026 * 17 16 15 36 36 H 1.08995 * 110.48726 * 203.40259 * 18 17 16 37 37 H 1.09007 * 110.59693 * 80.81497 * 18 17 16 38 38 H 1.08998 * 110.03256 * 359.95029 * 19 15 6 39 39 H 1.08996 * 110.03201 * 121.38322 * 19 15 6 40 40 H 1.08998 * 109.50314 * 62.28417 * 20 5 4 41 41 H 1.08997 * 109.50405 * 182.40630 * 20 5 4 42 42 H 1.08996 * 109.46266 * 294.17659 * 21 2 1 43 43 H 1.08999 * 109.46099 * 54.14340 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1187 0.5368 1.0143 6 7 5.5716 0.4488 0.8479 7 6 6.0984 -0.2013 -0.2361 8 1 6.7367 -1.0606 -0.0929 9 6 5.8118 0.2441 -1.5192 10 7 5.6580 1.5307 -1.7503 11 14 5.6444 -0.9825 -2.9181 12 1 5.8620 -2.3571 -2.4000 13 1 4.2832 -0.8832 -3.5034 14 1 6.6557 -0.6823 -3.9633 15 6 6.4609 1.0561 1.8411 16 6 7.4991 0.0219 2.3234 17 6 8.7440 0.2951 1.4420 18 6 8.7455 1.8392 1.3204 19 6 7.2529 2.2110 1.2033 20 6 3.5181 -0.8716 1.0208 21 6 1.9952 -0.7708 1.1338 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.7324 1.8608 0.9375 26 1 1.5634 1.9256 -0.8330 27 1 3.9099 2.3511 -0.1311 28 1 3.7819 0.8570 -1.0907 29 1 3.8896 1.0359 1.9560 30 1 5.4682 1.8428 -2.6488 31 1 5.8798 1.4240 2.6867 32 1 7.7347 0.1802 3.3757 33 1 7.1314 -0.9915 2.1620 34 1 8.6323 -0.1694 0.4622 35 1 9.6524 -0.0547 1.9323 36 1 9.2875 2.1510 0.4277 37 1 9.1831 2.2934 2.2095 38 1 6.9762 2.3190 0.1546 39 1 7.0561 3.1394 1.7394 40 1 3.7813 -1.3837 0.0953 41 1 3.9098 -1.4304 1.8707 42 1 1.7324 -0.2710 2.0660 43 1 1.5633 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704895361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:20 Heat of formation + Delta-G solvation = 7.214798 kcal Electronic energy + Delta-G solvation = -20631.579966 eV Core-core repulsion = 17904.278519 eV Total energy + Delta-G solvation = -2727.301447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13965 -38.75127 -35.98225 -33.57973 -31.90825 -31.44825 -29.18940 -28.31982 -27.15008 -25.03439 -23.71027 -22.80152 -21.14617 -20.83052 -20.09832 -18.14631 -16.75752 -16.70773 -16.29140 -15.89272 -15.81726 -15.34318 -15.11586 -14.55953 -14.45626 -13.94261 -13.69571 -13.41000 -13.13604 -13.05342 -12.88366 -12.68964 -12.29713 -12.26717 -12.01111 -11.95185 -11.80430 -11.65830 -11.59637 -11.47890 -11.36135 -11.08181 -10.99260 -10.85737 -9.79665 -9.13242 -8.24759 -7.46804 -5.45145 1.41901 1.52198 1.57184 2.55868 3.14091 3.24460 3.67139 4.12603 4.14517 4.20588 4.23981 4.33914 4.42629 4.44217 4.62771 4.64202 4.78310 4.78710 4.82654 4.92972 4.95233 5.00343 5.03671 5.04787 5.07467 5.11111 5.17995 5.30041 5.40008 5.44457 5.48815 5.52077 5.71253 5.73006 5.81637 5.91636 6.10008 6.14905 6.28255 6.34367 6.80949 7.45707 7.99500 8.72134 9.13757 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019946 B = 0.009385 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.446019 B = 2982.908864 C = 3658.720187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.563 5.563 3 C 0.063 3.937 4 C -0.105 4.105 5 C 0.186 3.814 6 N -0.584 5.584 7 C -0.264 4.264 8 H 0.030 0.970 9 C 0.032 3.968 10 N -0.863 5.863 11 Si 0.901 3.099 12 H -0.274 1.274 13 H -0.291 1.291 14 H -0.296 1.296 15 C 0.164 3.836 16 C -0.117 4.117 17 C -0.109 4.109 18 C -0.108 4.108 19 C -0.141 4.141 20 C -0.109 4.109 21 C 0.067 3.933 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.030 0.970 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.248 0.752 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.045 0.955 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 -1.065 7.199 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.289 5.289 3 C -0.065 4.065 4 C -0.145 4.145 5 C 0.080 3.920 6 N -0.305 5.305 7 C -0.395 4.395 8 H 0.048 0.952 9 C -0.171 4.171 10 N -0.501 5.501 11 Si 0.729 3.271 12 H -0.199 1.199 13 H -0.218 1.218 14 H -0.224 1.224 15 C 0.057 3.943 16 C -0.155 4.155 17 C -0.147 4.147 18 C -0.146 4.146 19 C -0.180 4.180 20 C -0.148 4.148 21 C -0.061 4.061 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.507 -1.162 6.648 8.115 hybrid contribution -0.329 0.084 -0.676 0.756 sum -4.836 -1.077 5.972 7.759 Atomic orbital electron populations 1.22363 0.86264 1.02537 1.00731 1.61853 1.08509 1.14104 1.44414 1.22119 0.96649 0.88665 0.99072 1.22053 0.91383 0.99304 1.01768 1.20455 0.84023 0.93288 0.94252 1.43965 0.99279 1.63411 1.23864 1.18168 1.30489 1.06928 0.83866 0.95239 1.25701 0.97677 0.94660 0.99098 1.70378 1.46539 1.13111 1.20108 0.86373 0.76845 0.82299 0.81568 1.19855 1.21806 1.22365 1.21252 0.91267 0.91384 0.90363 1.22550 0.95978 0.99078 0.97943 1.22330 0.97217 0.95745 0.99411 1.22155 0.96264 0.96202 0.99951 1.22738 0.95328 0.97286 1.02657 1.21782 0.93515 0.98669 1.00852 1.22048 0.95243 0.97989 0.90819 0.91500 0.90462 0.95172 0.95404 0.92081 0.94729 0.91679 0.94350 0.94250 0.93737 0.91300 0.93404 0.93575 0.91501 0.93975 0.91240 0.91072 0.94422 0.93655 0.92298 0.94715 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.59 127.69 1.22 1.97 16 2 N -0.56 -19.28 4.91 -922.59 -4.53 -23.81 16 3 C 0.06 2.33 5.46 86.33 0.47 2.80 16 4 C -0.11 -4.72 4.07 30.65 0.12 -4.59 16 5 C 0.19 7.98 2.72 45.07 0.12 8.10 16 6 N -0.58 -27.13 2.18 -649.80 -1.42 -28.54 16 7 C -0.26 -13.56 5.64 84.03 0.47 -13.09 16 8 H 0.03 1.63 7.06 -2.91 -0.02 1.61 16 9 C 0.03 1.67 3.37 84.86 0.29 1.96 16 10 N -0.86 -46.94 9.91 21.65 0.21 -46.73 16 11 Si 0.90 43.64 29.65 68.60 2.03 45.67 16 12 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 14 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 15 C 0.16 6.81 3.49 45.72 0.16 6.97 16 16 C -0.12 -4.31 5.97 31.70 0.19 -4.12 16 17 C -0.11 -4.02 6.56 31.91 0.21 -3.81 16 18 C -0.11 -3.94 6.83 31.67 0.22 -3.73 16 19 C -0.14 -5.96 6.33 31.32 0.20 -5.76 16 20 C -0.11 -4.25 5.33 30.65 0.16 -4.08 16 21 C 0.07 2.16 5.46 86.32 0.47 2.64 16 22 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 24 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 2.18 8.12 -2.39 -0.02 2.16 16 27 H 0.03 1.70 7.86 -2.39 -0.02 1.68 16 28 H 0.06 3.37 4.92 -2.39 -0.01 3.36 16 29 H 0.04 1.57 7.58 -2.38 -0.02 1.55 16 30 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 31 H 0.04 1.75 7.60 -2.38 -0.02 1.73 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 33 H 0.05 1.91 7.62 -2.39 -0.02 1.89 16 34 H 0.05 1.98 6.81 -2.39 -0.02 1.96 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.07 3.65 6.27 -2.39 -0.01 3.64 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.04 2.05 7.51 -2.39 -0.02 2.03 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.08 2.30 8.08 -2.39 -0.02 2.29 16 Total: -1.00 -55.72 316.07 1.55 -54.17 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.94 Total: 13.98 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 4.31 Total: -14.75 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -5.73 Total: -99.08 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -55.72 1.55 -54.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704895361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.385 kcal (2) G-P(sol) polarization free energy of solvation -55.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds