Wall clock time and date at job start Mon Mar 30 2020 05:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 110.99945 * 2 1 4 4 C 1.50698 * 109.47181 * 72.66190 * 3 2 1 5 5 H 1.08004 * 120.00363 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99950 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00119 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99831 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47559 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46953 * 120.00258 * 8 6 4 11 11 H 1.48503 * 109.46988 * 239.99893 * 8 6 4 12 12 C 1.46899 * 111.00270 * 236.04367 * 2 1 3 13 13 C 1.53773 * 109.47171 * 211.54212 * 12 2 1 14 14 C 1.52538 * 108.84366 * 294.31003 * 13 12 2 15 15 C 1.52475 * 112.15780 * 187.47839 * 14 13 12 16 16 C 1.52564 * 111.74382 * 47.60964 * 15 14 13 17 17 N 1.45915 * 111.97535 * 310.97552 * 16 15 14 18 18 C 1.45936 * 114.47653 * 290.67939 * 17 16 15 19 19 C 1.52569 * 111.89193 * 69.06183 * 18 17 16 20 20 C 1.52481 * 111.70846 * 49.26515 * 19 18 17 21 21 C 1.46610 * 111.79250 * 58.99136 * 17 16 15 22 22 H 1.09008 * 109.47284 * 178.95619 * 1 2 3 23 23 H 1.09001 * 109.47819 * 298.95693 * 1 2 3 24 24 H 1.08998 * 109.47549 * 58.95814 * 1 2 3 25 25 H 1.08990 * 109.47200 * 192.66173 * 3 2 1 26 26 H 1.09003 * 109.47041 * 312.66282 * 3 2 1 27 27 H 0.96999 * 120.00034 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47143 * 91.54343 * 12 2 1 29 29 H 1.09001 * 109.46624 * 331.54538 * 12 2 1 30 30 H 1.09581 * 109.16751 * 308.62984 * 14 13 12 31 31 H 1.09579 * 109.17872 * 66.31660 * 14 13 12 32 32 H 1.08010 * 111.76271 * 281.57648 * 15 14 13 33 33 H 1.10755 * 107.55005 * 165.29259 * 15 14 13 34 34 H 1.09538 * 109.05497 * 189.80708 * 16 15 14 35 35 H 1.09534 * 109.07479 * 72.16754 * 16 15 14 36 36 H 1.09533 * 109.33747 * 189.98571 * 18 17 16 37 37 H 1.09503 * 109.39952 * 308.02892 * 18 17 16 38 38 H 1.10749 * 107.45897 * 167.04140 * 19 18 17 39 39 H 1.08004 * 111.67498 * 283.24579 * 19 18 17 40 40 H 1.09585 * 109.17789 * 73.55875 * 20 19 18 41 41 H 1.09584 * 109.17170 * 191.24336 * 20 19 18 42 42 H 1.08835 * 109.90809 * 54.55114 * 21 17 16 43 43 H 1.08834 * 109.91741 * 175.75309 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7801 1.9922 1.3562 5 1 1.2998 1.4248 2.1398 6 6 2.1953 3.2848 1.5965 7 7 2.7788 3.9763 0.6421 8 14 1.9278 4.0544 3.2775 9 1 1.2549 3.0757 4.1687 10 1 3.2388 4.4354 3.8617 11 1 1.0777 5.2641 3.1384 12 6 1.9954 -0.7660 -1.1375 13 6 3.3327 -1.4150 -0.7435 14 6 4.3604 -0.3151 -0.4970 15 6 5.7616 -0.8757 -0.2792 16 6 6.1270 -1.9112 -1.3383 17 7 5.0773 -2.9101 -1.5103 18 6 4.9147 -3.8173 -0.3788 19 6 4.3480 -3.1042 0.8452 20 6 3.1153 -2.2774 0.4957 21 6 3.8038 -2.2993 -1.9034 22 1 -0.3634 -1.0276 -0.0187 23 1 -0.3635 0.4975 0.8992 24 1 -0.3634 0.5299 -0.8805 25 1 3.0616 1.3514 -0.2252 26 1 1.4754 1.9602 -0.7557 27 1 3.0712 4.8855 0.8113 28 1 2.1515 -0.0978 -1.9844 29 1 1.2821 -1.5425 -1.4139 30 1 4.3738 0.3640 -1.3568 31 1 4.0632 0.2643 0.3843 32 1 5.8861 -1.2652 0.7205 33 1 6.4763 -0.0352 -0.3762 34 1 7.0576 -2.4091 -1.0455 35 1 6.3030 -1.4014 -2.2916 36 1 4.2404 -4.6328 -0.6617 37 1 5.8848 -4.2551 -0.1213 38 1 4.0347 -3.8827 1.5679 39 1 5.0997 -2.5114 1.3451 40 1 2.2680 -2.9503 0.3221 41 1 2.8630 -1.6314 1.3442 42 1 3.9445 -1.6897 -2.7940 43 1 3.0646 -3.0746 -2.0960 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705207830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:48 Heat of formation + Delta-G solvation = 3.063179 kcal Electronic energy + Delta-G solvation = -20456.140742 eV Core-core repulsion = 17728.659267 eV Total energy + Delta-G solvation = -2727.481475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38398 -36.59008 -33.07197 -32.71015 -32.20885 -30.77687 -27.51047 -26.22298 -25.81998 -23.70265 -23.34520 -21.36872 -20.98424 -19.71848 -18.18133 -16.29882 -15.69288 -14.91516 -14.83378 -14.71900 -14.18976 -14.07166 -13.57538 -13.24329 -12.95167 -12.92678 -12.40443 -12.25603 -11.99737 -11.72803 -11.40725 -11.18501 -11.14357 -11.06039 -10.90777 -10.85726 -10.63167 -10.53081 -10.16031 -10.03759 -9.84642 -9.64838 -9.39578 -9.07414 -8.37942 -7.71742 -7.16145 -6.00868 -4.01069 3.30398 3.38173 3.42928 4.21259 4.43745 4.89894 4.98115 5.06287 5.30201 5.33568 5.34394 5.41982 5.48613 5.59549 5.63952 5.72193 5.74707 5.86661 5.97823 6.04799 6.09670 6.12308 6.15657 6.20568 6.28282 6.29397 6.38834 6.53881 6.55525 6.71329 6.74459 6.83717 6.92680 7.04425 7.32224 7.36861 7.42244 7.50337 7.85089 8.16332 8.25534 8.59820 9.07409 9.62754 11.09640 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026483 B = 0.006635 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.032814 B = 4218.743952 C = 4544.163984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.536 5.536 3 C 0.176 3.824 4 C -0.501 4.501 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 C 0.064 3.936 13 C -0.072 4.072 14 C -0.108 4.108 15 C -0.154 4.154 16 C 0.070 3.930 17 N -0.550 5.550 18 C 0.071 3.929 19 C -0.156 4.156 20 C -0.088 4.088 21 C 0.071 3.929 22 H 0.043 0.957 23 H 0.069 0.931 24 H 0.009 0.991 25 H 0.051 0.949 26 H -0.014 1.014 27 H 0.259 0.741 28 H 0.029 0.971 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 -13.101 -3.509 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.260 5.260 3 C 0.052 3.948 4 C -0.540 4.540 5 H 0.079 0.921 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.066 4.066 13 C -0.074 4.074 14 C -0.145 4.145 15 C -0.193 4.193 16 C -0.058 4.058 17 N -0.271 5.271 18 C -0.057 4.057 19 C -0.195 4.195 20 C -0.126 4.126 21 C -0.057 4.057 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.027 0.973 25 H 0.069 0.931 26 H 0.004 0.996 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.978 -13.437 -3.476 14.438 hybrid contribution -0.676 1.605 0.853 1.939 sum 3.302 -11.831 -2.623 12.560 Atomic orbital electron populations 1.22217 0.89288 0.98885 1.00527 1.62052 1.06213 1.17813 1.39949 1.20163 0.96528 0.81554 0.96592 1.21215 1.37958 0.97430 0.97416 0.92056 1.24972 0.95575 0.97212 0.96912 1.69962 1.41036 1.10626 1.32321 0.86511 0.77795 0.79134 0.84404 1.19740 1.21105 1.21190 1.22244 0.95182 0.96489 0.92641 1.20920 0.95268 0.95332 0.95870 1.21632 0.92250 0.96825 1.03812 1.22129 0.98209 0.99234 0.99703 1.21772 0.93552 0.91900 0.98544 1.60314 1.07659 1.21688 1.37463 1.21759 1.00401 0.94658 0.88909 1.22165 0.99302 0.99747 0.98245 1.21144 0.95344 0.97335 0.98740 1.22041 0.90119 0.96674 0.96875 0.93858 0.91219 0.97284 0.93147 0.99633 0.93099 0.95252 0.92861 0.92832 0.88730 0.91558 0.92954 0.91842 0.91369 0.91497 0.91832 0.93275 0.91416 0.93329 0.90157 0.91164 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.28 60.06 0.56 1.32 16 2 N -0.54 -11.26 3.67 -243.87 -0.89 -12.15 16 3 C 0.18 4.48 3.90 -4.97 -0.02 4.46 16 4 C -0.50 -13.92 8.63 -34.44 -0.30 -14.22 16 5 H 0.06 1.71 7.54 -52.48 -0.40 1.31 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 8 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.06 1.14 4.14 -3.42 -0.01 1.12 16 13 C -0.07 -1.15 0.54 -154.44 -0.08 -1.23 16 14 C -0.11 -1.92 3.23 -27.24 -0.09 -2.01 16 15 C -0.15 -2.31 5.14 -27.22 -0.14 -2.45 16 16 C 0.07 0.93 5.79 -4.58 -0.03 0.90 16 17 N -0.55 -7.36 4.80 -236.07 -1.13 -8.49 16 18 C 0.07 0.87 5.79 -4.57 -0.03 0.84 16 19 C -0.16 -2.08 5.14 -27.22 -0.14 -2.22 16 20 C -0.09 -1.37 4.37 -27.23 -0.12 -1.49 16 21 C 0.07 1.00 4.89 -3.84 -0.02 0.98 16 22 H 0.04 0.71 7.93 -51.92 -0.41 0.30 16 23 H 0.07 1.44 7.36 -51.93 -0.38 1.05 16 24 H 0.01 0.17 8.09 -51.93 -0.42 -0.25 16 25 H 0.05 1.32 4.26 -51.93 -0.22 1.10 16 26 H -0.01 -0.40 8.00 -51.93 -0.42 -0.81 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.03 0.55 7.76 -51.93 -0.40 0.15 16 29 H 0.05 0.85 7.62 -51.93 -0.40 0.46 16 30 H 0.05 1.01 7.73 -51.60 -0.40 0.61 16 31 H 0.09 2.06 6.00 -51.60 -0.31 1.75 16 32 H 0.07 1.00 5.51 -52.48 -0.29 0.71 16 33 H 0.05 0.78 8.28 -50.92 -0.42 0.36 16 34 H 0.06 0.75 8.16 -51.62 -0.42 0.33 16 35 H 0.07 0.88 8.19 -51.63 -0.42 0.46 16 36 H 0.07 0.77 8.19 -51.63 -0.42 0.35 16 37 H 0.06 0.71 8.16 -51.64 -0.42 0.29 16 38 H 0.05 0.60 8.28 -50.93 -0.42 0.18 16 39 H 0.07 0.95 5.50 -52.48 -0.29 0.66 16 40 H 0.05 0.73 8.16 -51.60 -0.42 0.31 16 41 H 0.08 1.49 7.73 -51.60 -0.40 1.09 16 42 H 0.07 0.99 8.12 -52.02 -0.42 0.56 16 43 H 0.07 0.91 8.12 -52.02 -0.42 0.49 16 LS Contribution 311.92 15.07 4.70 4.70 Total: -1.00 -28.57 311.92 -9.79 -38.36 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.66 Total: -0.69 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -0.51 Total: -12.57 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -1.29 Total: -46.46 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.57 -9.79 -38.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705207830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.419 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds