Wall clock time and date at job start Mon Mar 30 2020 05:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 110.99945 * 2 1 4 4 C 1.50698 * 109.47181 * 72.66190 * 3 2 1 5 5 H 1.08004 * 120.00363 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99950 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00119 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99831 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47559 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46953 * 120.00258 * 8 6 4 11 11 H 1.48503 * 109.46988 * 239.99893 * 8 6 4 12 12 C 1.46899 * 111.00270 * 236.04367 * 2 1 3 13 13 C 1.53773 * 109.47171 * 211.54212 * 12 2 1 14 14 C 1.52538 * 108.84366 * 294.31003 * 13 12 2 15 15 C 1.52475 * 112.15780 * 187.47839 * 14 13 12 16 16 C 1.52564 * 111.74382 * 47.60964 * 15 14 13 17 17 N 1.45915 * 111.97535 * 310.97552 * 16 15 14 18 18 C 1.45936 * 114.47653 * 290.67939 * 17 16 15 19 19 C 1.52569 * 111.89193 * 69.06183 * 18 17 16 20 20 C 1.52481 * 111.70846 * 49.26515 * 19 18 17 21 21 C 1.46610 * 111.79250 * 58.99136 * 17 16 15 22 22 H 1.09008 * 109.47284 * 178.95619 * 1 2 3 23 23 H 1.09001 * 109.47819 * 298.95693 * 1 2 3 24 24 H 1.08998 * 109.47549 * 58.95814 * 1 2 3 25 25 H 1.08990 * 109.47200 * 192.66173 * 3 2 1 26 26 H 1.09003 * 109.47041 * 312.66282 * 3 2 1 27 27 H 0.96999 * 120.00034 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47143 * 91.54343 * 12 2 1 29 29 H 1.09001 * 109.46624 * 331.54538 * 12 2 1 30 30 H 1.09581 * 109.16751 * 308.62984 * 14 13 12 31 31 H 1.09579 * 109.17872 * 66.31660 * 14 13 12 32 32 H 1.08010 * 111.76271 * 281.57648 * 15 14 13 33 33 H 1.10755 * 107.55005 * 165.29259 * 15 14 13 34 34 H 1.09538 * 109.05497 * 189.80708 * 16 15 14 35 35 H 1.09534 * 109.07479 * 72.16754 * 16 15 14 36 36 H 1.09533 * 109.33747 * 189.98571 * 18 17 16 37 37 H 1.09503 * 109.39952 * 308.02892 * 18 17 16 38 38 H 1.10749 * 107.45897 * 167.04140 * 19 18 17 39 39 H 1.08004 * 111.67498 * 283.24579 * 19 18 17 40 40 H 1.09585 * 109.17789 * 73.55875 * 20 19 18 41 41 H 1.09584 * 109.17170 * 191.24336 * 20 19 18 42 42 H 1.08835 * 109.90809 * 54.55114 * 21 17 16 43 43 H 1.08834 * 109.91741 * 175.75309 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7801 1.9922 1.3562 5 1 1.2998 1.4248 2.1398 6 6 2.1953 3.2848 1.5965 7 7 2.7788 3.9763 0.6421 8 14 1.9278 4.0544 3.2775 9 1 1.2549 3.0757 4.1687 10 1 3.2388 4.4354 3.8617 11 1 1.0777 5.2641 3.1384 12 6 1.9954 -0.7660 -1.1375 13 6 3.3327 -1.4150 -0.7435 14 6 4.3604 -0.3151 -0.4970 15 6 5.7616 -0.8757 -0.2792 16 6 6.1270 -1.9112 -1.3383 17 7 5.0773 -2.9101 -1.5103 18 6 4.9147 -3.8173 -0.3788 19 6 4.3480 -3.1042 0.8452 20 6 3.1153 -2.2774 0.4957 21 6 3.8038 -2.2993 -1.9034 22 1 -0.3634 -1.0276 -0.0187 23 1 -0.3635 0.4975 0.8992 24 1 -0.3634 0.5299 -0.8805 25 1 3.0616 1.3514 -0.2252 26 1 1.4754 1.9602 -0.7557 27 1 3.0712 4.8855 0.8113 28 1 2.1515 -0.0978 -1.9844 29 1 1.2821 -1.5425 -1.4139 30 1 4.3738 0.3640 -1.3568 31 1 4.0632 0.2643 0.3843 32 1 5.8861 -1.2652 0.7205 33 1 6.4763 -0.0352 -0.3762 34 1 7.0576 -2.4091 -1.0455 35 1 6.3030 -1.4014 -2.2916 36 1 4.2404 -4.6328 -0.6617 37 1 5.8848 -4.2551 -0.1213 38 1 4.0347 -3.8827 1.5679 39 1 5.0997 -2.5114 1.3451 40 1 2.2680 -2.9503 0.3221 41 1 2.8630 -1.6314 1.3442 42 1 3.9445 -1.6897 -2.7940 43 1 3.0646 -3.0746 -2.0960 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705207830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:47 Heat of formation + Delta-G solvation = -15.140846 kcal Electronic energy + Delta-G solvation = -20456.930127 eV Core-core repulsion = 17728.659267 eV Total energy + Delta-G solvation = -2728.270860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.61319 -38.19879 -34.88743 -33.90817 -33.85135 -31.99268 -29.49711 -27.65529 -27.11000 -25.53384 -24.56351 -22.85364 -22.23965 -21.22926 -19.41716 -18.45529 -16.92243 -16.78465 -16.21326 -15.85349 -15.75421 -15.60535 -14.99788 -14.71731 -14.54096 -14.11905 -13.91810 -13.64582 -13.52729 -13.26212 -12.94911 -12.86297 -12.62611 -12.42966 -12.34170 -12.32761 -12.23269 -11.91788 -11.90702 -11.50782 -11.39127 -11.19584 -10.92570 -10.61751 -10.52919 -8.93920 -8.85476 -8.19515 -6.28038 1.36752 1.37531 1.50678 2.38573 3.12529 3.14797 3.38556 3.76352 3.82278 4.04352 4.17360 4.19001 4.32426 4.38418 4.45599 4.47405 4.56820 4.61675 4.64578 4.70885 4.74458 4.83811 4.94171 5.01590 5.02388 5.05990 5.08376 5.09052 5.20697 5.29989 5.32854 5.34451 5.45907 5.49422 5.63082 5.64996 5.72577 6.11423 6.26154 6.41205 6.45487 6.70304 6.88730 7.40791 8.90909 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026483 B = 0.006635 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.032814 B = 4218.743952 C = 4544.163984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.540 5.540 3 C 0.193 3.807 4 C -0.515 4.515 5 H 0.056 0.944 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.962 3.038 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.063 3.937 13 C -0.068 4.068 14 C -0.098 4.098 15 C -0.148 4.148 16 C 0.074 3.926 17 N -0.548 5.548 18 C 0.071 3.929 19 C -0.152 4.152 20 C -0.082 4.082 21 C 0.078 3.922 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.005 0.995 25 H 0.038 0.962 26 H -0.053 1.053 27 H 0.262 0.738 28 H 0.014 0.986 29 H 0.081 0.919 30 H 0.030 0.970 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.067 0.933 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -15.509 -3.225 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.263 5.263 3 C 0.067 3.933 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.787 3.213 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.205 1.205 12 C -0.066 4.066 13 C -0.071 4.071 14 C -0.136 4.136 15 C -0.187 4.187 16 C -0.054 4.054 17 N -0.268 5.268 18 C -0.057 4.057 19 C -0.191 4.191 20 C -0.120 4.120 21 C -0.050 4.050 22 H 0.098 0.902 23 H 0.070 0.930 24 H 0.024 0.976 25 H 0.056 0.944 26 H -0.035 1.035 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.263 -15.869 -3.194 16.739 hybrid contribution -0.788 2.345 0.749 2.585 sum 3.475 -13.524 -2.446 14.175 Atomic orbital electron populations 1.22245 0.88166 1.00918 0.99467 1.61995 1.07308 1.15218 1.41795 1.19828 0.95465 0.83480 0.94482 1.21490 1.37770 0.97893 0.98172 0.92554 1.25840 0.95184 0.97751 1.00840 1.70087 1.41953 1.11034 1.34475 0.85437 0.77917 0.78248 0.79653 1.18947 1.20480 1.20480 1.22376 0.96852 0.96425 0.90959 1.20919 0.93564 0.95074 0.97495 1.21443 0.94855 0.96894 1.00370 1.22095 0.96004 0.99884 1.00761 1.21785 0.94439 0.91446 0.97738 1.60369 1.07034 1.21360 1.38037 1.21857 1.01800 0.94388 0.87610 1.22109 0.97937 0.99672 0.99419 1.21052 0.97131 0.96971 0.96807 1.22001 0.90973 0.96600 0.95467 0.90151 0.92998 0.97647 0.94433 1.03509 0.92890 0.96777 0.90081 0.95145 0.93595 0.91398 0.93424 0.89545 0.91176 0.89902 0.89947 0.91594 0.92485 0.92128 0.93873 0.91401 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 9.28 127.69 1.18 2.75 16 2 N -0.54 -23.24 3.67 -925.46 -3.40 -26.63 16 3 C 0.19 10.38 3.90 85.56 0.33 10.72 16 4 C -0.51 -29.67 8.63 25.60 0.22 -29.45 16 5 H 0.06 3.23 7.54 -2.91 -0.02 3.21 16 6 C 0.00 0.08 5.46 84.66 0.46 0.54 16 7 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 8 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 C 0.06 2.23 4.14 86.56 0.36 2.58 16 13 C -0.07 -2.16 0.54 -52.13 -0.03 -2.19 16 14 C -0.10 -3.64 3.23 30.27 0.10 -3.54 16 15 C -0.15 -4.44 5.14 30.28 0.16 -4.29 16 16 C 0.07 1.79 5.79 86.34 0.50 2.29 16 17 N -0.55 -12.93 4.80 -900.79 -4.32 -17.25 16 18 C 0.07 1.47 5.79 86.34 0.50 1.97 16 19 C -0.15 -3.71 5.14 30.28 0.16 -3.56 16 20 C -0.08 -2.46 4.37 30.27 0.13 -2.33 16 21 C 0.08 2.01 4.89 86.45 0.42 2.43 16 22 H 0.08 2.50 7.93 -2.38 -0.02 2.48 16 23 H 0.05 2.17 7.36 -2.39 -0.02 2.15 16 24 H 0.00 0.20 8.09 -2.39 -0.02 0.18 16 25 H 0.04 2.12 4.26 -2.39 -0.01 2.11 16 26 H -0.05 -3.17 8.00 -2.39 -0.02 -3.19 16 27 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.01 0.54 7.76 -2.39 -0.02 0.52 16 29 H 0.08 2.42 7.62 -2.39 -0.02 2.40 16 30 H 0.03 1.22 7.73 -2.08 -0.02 1.21 16 31 H 0.05 2.14 6.00 -2.08 -0.01 2.12 16 32 H 0.07 2.01 5.51 -2.91 -0.02 2.00 16 33 H 0.05 1.44 8.28 -1.44 -0.01 1.43 16 34 H 0.09 1.74 8.16 -2.10 -0.02 1.73 16 35 H 0.07 1.68 8.19 -2.10 -0.02 1.66 16 36 H 0.08 1.51 8.19 -2.10 -0.02 1.49 16 37 H 0.08 1.45 8.16 -2.12 -0.02 1.44 16 38 H 0.07 1.40 8.28 -1.44 -0.01 1.39 16 39 H 0.06 1.52 5.50 -2.91 -0.02 1.50 16 40 H 0.06 1.67 8.16 -2.08 -0.02 1.65 16 41 H 0.04 1.61 7.73 -2.08 -0.02 1.60 16 42 H 0.07 1.79 8.12 -2.47 -0.02 1.77 16 43 H 0.09 1.98 8.12 -2.47 -0.02 1.96 16 Total: -1.00 -63.92 311.92 0.07 -63.85 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.98 Total: 11.60 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 4.50 Total: -22.07 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -7.43 Total: -100.67 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -63.92 0.07 -63.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705207830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.712 kcal (2) G-P(sol) polarization free energy of solvation -63.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds