Wall clock time and date at job start Mon Mar 30 2020 03:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46854 * 110.99764 * 2 1 4 4 C 1.53038 * 109.52083 * 185.83956 * 3 2 1 5 5 C 1.53116 * 109.28139 * 300.82106 * 4 3 2 6 6 C 1.53097 * 109.15643 * 57.65529 * 5 4 3 7 7 C 1.46847 * 111.00330 * 124.20731 * 2 1 3 8 8 H 1.08996 * 109.46316 * 294.17811 * 7 2 1 9 9 C 1.53004 * 109.45843 * 54.15920 * 7 2 1 10 10 C 1.52998 * 109.46649 * 183.63340 * 9 7 2 11 11 N 1.46499 * 109.47023 * 180.32660 * 10 9 7 12 12 C 1.36940 * 120.00077 * 269.99919 * 11 10 9 13 13 H 1.08006 * 119.99874 * 137.88423 * 12 11 10 14 14 C 1.38806 * 120.00046 * 317.88753 * 12 11 10 15 15 N 1.31625 * 120.00095 * 344.03370 * 14 12 11 16 16 Si 1.86800 * 120.00350 * 164.03860 * 14 12 11 17 17 H 1.48500 * 109.46702 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47523 * 119.99605 * 16 14 12 19 19 H 1.48502 * 109.47243 * 239.99865 * 16 14 12 20 20 C 1.46499 * 120.00290 * 89.99809 * 11 10 9 21 21 C 1.52998 * 117.50275 * 192.76568 * 20 11 10 22 22 C 1.53001 * 117.50341 * 124.10150 * 20 11 10 23 23 H 1.09007 * 109.47133 * 290.08203 * 1 2 3 24 24 H 1.08999 * 109.47764 * 50.07889 * 1 2 3 25 25 H 1.09000 * 109.46904 * 170.08559 * 1 2 3 26 26 H 1.08996 * 109.46110 * 305.85547 * 3 2 1 27 27 H 1.08994 * 109.46192 * 65.83542 * 3 2 1 28 28 H 1.09004 * 109.50459 * 60.76720 * 4 3 2 29 29 H 1.09000 * 109.50141 * 180.87626 * 4 3 2 30 30 H 1.09001 * 109.52164 * 177.56218 * 5 4 3 31 31 H 1.09004 * 109.52114 * 297.68764 * 5 4 3 32 32 H 1.08992 * 109.49185 * 182.40139 * 6 5 4 33 33 H 1.09005 * 109.50397 * 62.28528 * 6 5 4 34 34 H 1.08998 * 109.47062 * 303.62781 * 9 7 2 35 35 H 1.08996 * 109.47542 * 63.63241 * 9 7 2 36 36 H 1.08998 * 109.47340 * 300.31976 * 10 9 7 37 37 H 1.08998 * 109.47652 * 60.32664 * 10 9 7 38 38 H 0.96998 * 120.00369 * 185.02647 * 15 14 12 39 39 H 1.09005 * 115.54749 * 338.43256 * 20 11 10 40 40 H 1.09000 * 117.49570 * 359.97438 * 21 20 11 41 41 H 1.09000 * 117.50004 * 145.01902 * 21 20 11 42 42 H 1.08995 * 117.50058 * 214.98118 * 22 20 11 43 43 H 1.09002 * 117.49501 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1188 0.5371 1.0143 6 6 3.5182 -0.8712 1.0207 7 6 1.9953 -0.7707 1.1338 8 1 1.7325 -0.2708 2.0660 9 6 1.3894 -2.1756 1.1202 10 6 1.8670 -2.9487 2.3510 11 7 1.2931 -4.2965 2.3341 12 6 0.0865 -4.5346 2.9364 13 1 -0.6447 -5.1638 2.4506 14 6 -0.1967 -3.9673 4.1712 15 7 0.7759 -3.4710 4.9061 16 14 -1.9583 -3.9083 4.7900 17 1 -2.8575 -4.5273 3.7833 18 1 -2.0587 -4.6550 6.0697 19 1 -2.3591 -2.4952 5.0087 20 6 2.0099 -5.3897 1.6727 21 6 1.2422 -6.6895 1.4240 22 6 2.3242 -6.6342 2.5054 23 1 -0.3634 0.3529 0.9652 24 1 -0.3634 0.6595 -0.7881 25 1 -0.3633 -1.0123 -0.1769 26 1 1.5633 1.9257 -0.8329 27 1 1.7326 1.8608 0.9376 28 1 3.7813 0.8569 -1.0907 29 1 3.9098 2.3513 -0.1311 30 1 5.1998 0.4716 0.8904 31 1 3.8896 1.0362 1.9559 32 1 3.9101 -1.4298 1.8705 33 1 3.7814 -1.3833 0.0951 34 1 0.3020 -2.1025 1.1365 35 1 1.7049 -2.6987 0.2175 36 1 2.9547 -3.0170 2.3378 37 1 1.5464 -2.4288 3.2538 38 1 0.5893 -3.1410 5.7989 39 1 2.7423 -5.0867 0.9244 40 1 0.2038 -6.7315 1.7528 41 1 1.4697 -7.2419 0.5123 42 1 3.2630 -7.1502 2.3046 43 1 1.9979 -6.6395 3.5454 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706821144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:42 Heat of formation + Delta-G solvation = 37.311211 kcal Electronic energy + Delta-G solvation = -19740.376553 eV Core-core repulsion = 17014.380184 eV Total energy + Delta-G solvation = -2725.996369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.03428 -36.89813 -33.94732 -33.31369 -32.27591 -30.21586 -27.52617 -26.21374 -24.57713 -22.99477 -22.13206 -21.28715 -20.34174 -19.67208 -19.20117 -16.34518 -15.54694 -15.27547 -14.87017 -14.48418 -14.34458 -13.96847 -13.92319 -13.61281 -12.88178 -12.66089 -12.27798 -12.02492 -11.84923 -11.75905 -11.42753 -11.22775 -11.00218 -10.81702 -10.67752 -10.66112 -10.45075 -10.28561 -10.06691 -9.87291 -9.80307 -9.56446 -9.30391 -9.17192 -8.46068 -7.99958 -6.33884 -5.79288 -3.42428 3.31613 3.40580 3.43227 4.19021 4.43866 4.98254 5.03800 5.05506 5.13077 5.31111 5.37932 5.38805 5.57250 5.69813 5.71704 5.77486 5.84859 5.95433 6.00579 6.06072 6.10003 6.16520 6.19525 6.24052 6.29825 6.39814 6.44735 6.50665 6.57259 6.62633 6.66808 6.78108 6.95146 7.11431 7.21911 7.32225 7.44278 7.48780 7.72503 7.86017 8.58128 9.21519 9.81013 10.41546 11.20231 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019260 B = 0.006822 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.465083 B = 4103.357459 C = 4809.529172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.539 5.539 3 C 0.055 3.945 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.111 4.111 7 C 0.089 3.911 8 H 0.037 0.963 9 C -0.128 4.128 10 C 0.154 3.846 11 N -0.551 5.551 12 C -0.259 4.259 13 H 0.061 0.939 14 C 0.018 3.982 15 N -0.889 5.889 16 Si 0.896 3.104 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.288 1.288 20 C 0.127 3.873 21 C -0.204 4.204 22 C -0.220 4.220 23 H 0.023 0.977 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.027 0.973 37 H 0.091 0.909 38 H 0.255 0.745 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 7.332 -8.246 11.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.073 4.073 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.148 4.148 7 C -0.019 4.019 8 H 0.055 0.945 9 C -0.168 4.168 10 C 0.028 3.972 11 N -0.267 5.267 12 C -0.389 4.389 13 H 0.078 0.922 14 C -0.182 4.182 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.200 1.200 18 H -0.215 1.215 19 H -0.214 1.214 20 C 0.017 3.983 21 C -0.243 4.243 22 C -0.261 4.261 23 H 0.042 0.958 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.200 7.289 -8.515 11.970 hybrid contribution -1.245 0.341 1.243 1.792 sum 2.955 7.630 -7.272 10.947 Atomic orbital electron populations 1.22369 0.87663 1.02729 0.99590 1.61989 1.07429 1.12492 1.44484 1.22063 0.95522 0.89980 0.99766 1.21565 0.94683 0.99542 0.99448 1.21603 0.99531 0.96675 0.98194 1.21655 0.94531 0.96124 1.02520 1.21672 0.94541 0.95227 0.90479 0.94483 1.22312 1.00698 0.92702 1.01082 1.20925 0.94228 0.85442 0.96649 1.43345 1.20178 1.01637 1.61567 1.19003 0.90967 1.29865 0.99049 0.92158 1.25366 0.97105 1.00107 0.95660 1.69886 1.30364 1.43835 1.08985 0.86331 0.85032 0.77483 0.78630 1.19970 1.21509 1.21439 1.21186 0.96439 0.83878 0.96790 1.23065 0.98318 1.03804 0.99151 1.23296 0.97792 1.07307 0.97737 0.95810 0.92364 0.90521 0.91439 0.95433 0.91347 0.92199 0.92197 0.92482 0.90888 0.91525 0.92093 0.93047 0.95473 0.89111 0.93475 0.89473 0.88827 0.91025 0.91421 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.90 60.06 0.53 0.90 16 2 N -0.54 -8.30 4.75 -234.92 -1.11 -9.41 16 3 C 0.05 0.72 5.46 -3.83 -0.02 0.70 16 4 C -0.11 -1.35 6.09 -26.65 -0.16 -1.51 16 5 C -0.12 -1.56 6.00 -26.62 -0.16 -1.72 16 6 C -0.11 -1.68 5.08 -26.66 -0.14 -1.81 16 7 C 0.09 1.52 1.92 -67.72 -0.13 1.39 16 8 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 9 C -0.13 -2.52 4.72 -26.73 -0.13 -2.64 16 10 C 0.15 3.51 5.06 -4.04 -0.02 3.49 16 11 N -0.55 -13.61 2.75 -165.66 -0.46 -14.06 16 12 C -0.26 -6.95 8.48 -15.06 -0.13 -7.07 16 13 H 0.06 1.64 6.56 -52.48 -0.34 1.30 16 14 C 0.02 0.50 5.05 -17.43 -0.09 0.41 16 15 N -0.89 -25.19 11.46 55.49 0.64 -24.55 16 16 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 C 0.13 2.77 6.60 -67.93 -0.45 2.33 16 21 C -0.20 -4.16 9.86 -26.69 -0.26 -4.42 16 22 C -0.22 -4.66 10.20 -26.69 -0.27 -4.93 16 23 H 0.02 0.36 8.12 -51.92 -0.42 -0.06 16 24 H 0.06 0.73 7.99 -51.93 -0.41 0.31 16 25 H 0.08 1.21 6.49 -51.93 -0.34 0.87 16 26 H 0.07 0.78 8.02 -51.93 -0.42 0.37 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.16 6.56 -51.93 -0.34 0.82 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.30 6.24 -51.93 -0.32 0.97 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.03 0.59 6.45 -51.93 -0.34 0.26 16 37 H 0.09 2.37 5.65 -51.93 -0.29 2.08 16 38 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 39 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 40 H 0.09 2.06 6.43 -51.93 -0.33 1.72 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.09 2.21 8.14 -51.93 -0.42 1.78 16 LS Contribution 327.81 15.07 4.94 4.94 Total: -1.00 -27.89 327.81 -10.21 -38.10 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.77 Total: 3.50 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -1.42 Total: -14.90 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.93 Total: -48.02 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.89 -10.21 -38.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706821144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.411 kcal (2) G-P(sol) polarization free energy of solvation -27.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds