Wall clock time and date at job start Mon Mar 30 2020 03:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46854 * 110.99764 * 2 1 4 4 C 1.53038 * 109.52083 * 185.83956 * 3 2 1 5 5 C 1.53116 * 109.28139 * 300.82106 * 4 3 2 6 6 C 1.53097 * 109.15643 * 57.65529 * 5 4 3 7 7 C 1.46847 * 111.00330 * 124.20731 * 2 1 3 8 8 H 1.08996 * 109.46316 * 294.17811 * 7 2 1 9 9 C 1.53004 * 109.45843 * 54.15920 * 7 2 1 10 10 C 1.52998 * 109.46649 * 183.63340 * 9 7 2 11 11 N 1.46499 * 109.47023 * 180.32660 * 10 9 7 12 12 C 1.36940 * 120.00077 * 269.99919 * 11 10 9 13 13 H 1.08006 * 119.99874 * 137.88423 * 12 11 10 14 14 C 1.38806 * 120.00046 * 317.88753 * 12 11 10 15 15 N 1.31625 * 120.00095 * 344.03370 * 14 12 11 16 16 Si 1.86800 * 120.00350 * 164.03860 * 14 12 11 17 17 H 1.48500 * 109.46702 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47523 * 119.99605 * 16 14 12 19 19 H 1.48502 * 109.47243 * 239.99865 * 16 14 12 20 20 C 1.46499 * 120.00290 * 89.99809 * 11 10 9 21 21 C 1.52998 * 117.50275 * 192.76568 * 20 11 10 22 22 C 1.53001 * 117.50341 * 124.10150 * 20 11 10 23 23 H 1.09007 * 109.47133 * 290.08203 * 1 2 3 24 24 H 1.08999 * 109.47764 * 50.07889 * 1 2 3 25 25 H 1.09000 * 109.46904 * 170.08559 * 1 2 3 26 26 H 1.08996 * 109.46110 * 305.85547 * 3 2 1 27 27 H 1.08994 * 109.46192 * 65.83542 * 3 2 1 28 28 H 1.09004 * 109.50459 * 60.76720 * 4 3 2 29 29 H 1.09000 * 109.50141 * 180.87626 * 4 3 2 30 30 H 1.09001 * 109.52164 * 177.56218 * 5 4 3 31 31 H 1.09004 * 109.52114 * 297.68764 * 5 4 3 32 32 H 1.08992 * 109.49185 * 182.40139 * 6 5 4 33 33 H 1.09005 * 109.50397 * 62.28528 * 6 5 4 34 34 H 1.08998 * 109.47062 * 303.62781 * 9 7 2 35 35 H 1.08996 * 109.47542 * 63.63241 * 9 7 2 36 36 H 1.08998 * 109.47340 * 300.31976 * 10 9 7 37 37 H 1.08998 * 109.47652 * 60.32664 * 10 9 7 38 38 H 0.96998 * 120.00369 * 185.02647 * 15 14 12 39 39 H 1.09005 * 115.54749 * 338.43256 * 20 11 10 40 40 H 1.09000 * 117.49570 * 359.97438 * 21 20 11 41 41 H 1.09000 * 117.50004 * 145.01902 * 21 20 11 42 42 H 1.08995 * 117.50058 * 214.98118 * 22 20 11 43 43 H 1.09002 * 117.49501 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1188 0.5371 1.0143 6 6 3.5182 -0.8712 1.0207 7 6 1.9953 -0.7707 1.1338 8 1 1.7325 -0.2708 2.0660 9 6 1.3894 -2.1756 1.1202 10 6 1.8670 -2.9487 2.3510 11 7 1.2931 -4.2965 2.3341 12 6 0.0865 -4.5346 2.9364 13 1 -0.6447 -5.1638 2.4506 14 6 -0.1967 -3.9673 4.1712 15 7 0.7759 -3.4710 4.9061 16 14 -1.9583 -3.9083 4.7900 17 1 -2.8575 -4.5273 3.7833 18 1 -2.0587 -4.6550 6.0697 19 1 -2.3591 -2.4952 5.0087 20 6 2.0099 -5.3897 1.6727 21 6 1.2422 -6.6895 1.4240 22 6 2.3242 -6.6342 2.5054 23 1 -0.3634 0.3529 0.9652 24 1 -0.3634 0.6595 -0.7881 25 1 -0.3633 -1.0123 -0.1769 26 1 1.5633 1.9257 -0.8329 27 1 1.7326 1.8608 0.9376 28 1 3.7813 0.8569 -1.0907 29 1 3.9098 2.3513 -0.1311 30 1 5.1998 0.4716 0.8904 31 1 3.8896 1.0362 1.9559 32 1 3.9101 -1.4298 1.8705 33 1 3.7814 -1.3833 0.0951 34 1 0.3020 -2.1025 1.1365 35 1 1.7049 -2.6987 0.2175 36 1 2.9547 -3.0170 2.3378 37 1 1.5464 -2.4288 3.2538 38 1 0.5893 -3.1410 5.7989 39 1 2.7423 -5.0867 0.9244 40 1 0.2038 -6.7315 1.7528 41 1 1.4697 -7.2419 0.5123 42 1 3.2630 -7.1502 2.3046 43 1 1.9979 -6.6395 3.5454 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706821144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:41 Heat of formation + Delta-G solvation = 22.271215 kcal Electronic energy + Delta-G solvation = -19741.028736 eV Core-core repulsion = 17014.380184 eV Total energy + Delta-G solvation = -2726.648552 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.29342 -38.66105 -35.63505 -34.47601 -33.99627 -31.95574 -29.03209 -27.49040 -26.41983 -24.42717 -23.46437 -22.95466 -21.80859 -21.37121 -20.51601 -18.25433 -17.24962 -16.78025 -16.28532 -16.10074 -15.82173 -15.45979 -15.09729 -14.99781 -14.40100 -14.08972 -13.70091 -13.66435 -13.53328 -13.14972 -12.87401 -12.67139 -12.62683 -12.52535 -12.38785 -12.11391 -11.91449 -11.81003 -11.56795 -11.45062 -11.38942 -11.12749 -10.87983 -10.84946 -10.50109 -9.25524 -8.34172 -7.82927 -5.51451 1.38675 1.42154 1.51712 2.44276 2.97452 3.16721 3.44973 3.55447 3.90042 3.99248 4.03175 4.19985 4.33437 4.39496 4.48973 4.50806 4.52711 4.58444 4.62320 4.63610 4.75360 4.84593 4.91115 4.95889 4.98572 5.02981 5.09463 5.10775 5.12654 5.14287 5.27621 5.35795 5.38841 5.51591 5.52603 5.57537 5.68959 5.87338 6.16402 6.25923 6.50870 7.18293 7.86095 8.39359 9.11517 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019260 B = 0.006822 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.465083 B = 4103.357459 C = 4809.529172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.051 3.949 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.107 4.107 7 C 0.096 3.904 8 H 0.013 0.987 9 C -0.108 4.108 10 C 0.160 3.840 11 N -0.569 5.569 12 C -0.260 4.260 13 H 0.053 0.947 14 C -0.030 4.030 15 N -0.918 5.918 16 Si 0.953 3.047 17 H -0.267 1.267 18 H -0.289 1.289 19 H -0.289 1.289 20 C 0.105 3.895 21 C -0.187 4.187 22 C -0.217 4.217 23 H 0.011 0.989 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.021 0.979 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.053 0.947 36 H 0.032 0.968 37 H 0.056 0.944 38 H 0.252 0.748 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.748 7.865 -10.190 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.077 4.077 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.145 4.145 7 C -0.013 4.013 8 H 0.031 0.969 9 C -0.148 4.148 10 C 0.034 3.966 11 N -0.287 5.287 12 C -0.391 4.391 13 H 0.071 0.929 14 C -0.227 4.227 15 N -0.561 5.561 16 Si 0.781 3.219 17 H -0.192 1.192 18 H -0.215 1.215 19 H -0.216 1.216 20 C -0.003 4.003 21 C -0.226 4.226 22 C -0.258 4.258 23 H 0.029 0.971 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.039 0.961 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.129 0.871 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.118 0.882 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.878 7.816 -10.481 13.955 hybrid contribution -1.432 0.144 1.809 2.312 sum 3.446 7.960 -8.672 12.265 Atomic orbital electron populations 1.22374 0.87561 1.02438 0.99892 1.62013 1.07648 1.14025 1.43003 1.22221 0.96704 0.88449 1.00319 1.21566 0.93448 1.00850 0.98853 1.21598 1.00637 0.94936 0.98606 1.21598 0.92944 0.97945 1.01995 1.21496 0.95910 0.93580 0.90282 0.96910 1.22008 0.99250 0.94144 0.99370 1.20775 0.94301 0.85009 0.96486 1.43554 1.20108 1.03046 1.61944 1.19120 0.91903 1.29156 0.98924 0.92934 1.25988 1.00263 1.00448 0.96035 1.70023 1.31945 1.45085 1.09078 0.85442 0.81316 0.77166 0.78022 1.19178 1.21544 1.21554 1.21492 0.97623 0.83686 0.97546 1.23059 0.96832 1.02625 1.00068 1.23209 0.99525 1.07222 0.95837 0.97062 0.89607 0.92021 0.89340 0.96060 0.91008 0.89638 0.90253 0.93055 0.92274 0.91178 0.94261 0.92791 0.94971 0.92638 0.93908 0.87068 0.90985 0.87267 0.88189 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 8.90 127.69 1.14 1.87 16 2 N -0.54 -16.08 4.75 -897.16 -4.26 -20.33 16 3 C 0.05 1.21 5.46 86.32 0.47 1.68 16 4 C -0.11 -2.25 6.09 30.65 0.19 -2.06 16 5 C -0.12 -2.83 6.00 30.67 0.18 -2.65 16 6 C -0.11 -3.16 5.08 30.64 0.16 -3.01 16 7 C 0.10 3.30 1.92 44.94 0.09 3.38 16 8 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 9 C -0.11 -4.32 4.72 30.60 0.14 -4.17 16 10 C 0.16 7.53 5.06 86.38 0.44 7.97 16 11 N -0.57 -28.58 2.75 -678.04 -1.87 -30.45 16 12 C -0.26 -14.30 8.48 84.03 0.71 -13.59 16 13 H 0.05 2.93 6.56 -2.91 -0.02 2.91 16 14 C -0.03 -1.66 5.05 84.86 0.43 -1.23 16 15 N -0.92 -53.85 11.46 21.65 0.25 -53.60 16 16 Si 0.95 45.05 29.59 68.60 2.03 47.08 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 20 C 0.11 4.51 6.60 44.99 0.30 4.81 16 21 C -0.19 -7.30 9.86 30.62 0.30 -7.00 16 22 C -0.22 -8.97 10.20 30.62 0.31 -8.65 16 23 H 0.01 0.34 8.12 -2.38 -0.02 0.32 16 24 H 0.09 1.98 7.99 -2.39 -0.02 1.96 16 25 H 0.06 1.95 6.49 -2.39 -0.02 1.93 16 26 H 0.09 1.76 8.02 -2.39 -0.02 1.75 16 27 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.06 1.89 6.56 -2.39 -0.02 1.87 16 33 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.04 1.72 6.24 -2.39 -0.01 1.71 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.03 1.44 6.45 -2.39 -0.02 1.43 16 37 H 0.06 3.04 5.65 -2.39 -0.01 3.03 16 38 H 0.25 14.29 8.32 -92.71 -0.77 13.52 16 39 H 0.11 4.20 8.14 -2.38 -0.02 4.18 16 40 H 0.07 3.13 6.43 -2.39 -0.02 3.12 16 41 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 42 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 43 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -61.27 327.81 1.96 -59.31 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.95 Total: 20.64 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 4.85 Total: -22.65 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -5.87 Total: -104.38 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -61.27 1.96 -59.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706821144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.580 kcal (2) G-P(sol) polarization free energy of solvation -61.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds