Wall clock time and date at job start Mon Mar 30 2020 03:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46848 * 110.99969 * 2 1 4 4 C 1.53041 * 109.52090 * 174.16022 * 3 2 1 5 5 C 1.53121 * 109.27533 * 59.17946 * 4 3 2 6 6 C 1.53114 * 109.16102 * 302.34072 * 5 4 3 7 7 C 1.46846 * 110.99947 * 235.78836 * 2 1 3 8 8 H 1.08994 * 109.45238 * 65.82844 * 7 2 1 9 9 C 1.53006 * 109.45922 * 305.85355 * 7 2 1 10 10 C 1.53002 * 109.46789 * 176.22525 * 9 7 2 11 11 N 1.46494 * 109.47080 * 181.78141 * 10 9 7 12 12 C 1.36938 * 119.99970 * 90.00347 * 11 10 9 13 13 H 1.08005 * 119.99806 * 216.65350 * 12 11 10 14 14 C 1.38817 * 120.00262 * 36.65080 * 12 11 10 15 15 N 1.31619 * 119.99487 * 21.04586 * 14 12 11 16 16 Si 1.86799 * 120.00194 * 201.04344 * 14 12 11 17 17 H 1.48502 * 109.47239 * 89.99959 * 16 14 12 18 18 H 1.48501 * 109.47093 * 210.00185 * 16 14 12 19 19 H 1.48500 * 109.47127 * 330.00102 * 16 14 12 20 20 C 1.46497 * 120.00124 * 269.72795 * 11 10 9 21 21 C 1.53004 * 117.49851 * 194.04814 * 20 11 10 22 22 C 1.52997 * 117.50072 * 125.42663 * 20 11 10 23 23 H 1.08993 * 109.47339 * 190.65037 * 1 2 3 24 24 H 1.09004 * 109.46574 * 310.65042 * 1 2 3 25 25 H 1.08996 * 109.47057 * 70.64851 * 1 2 3 26 26 H 1.08998 * 109.46255 * 54.14476 * 3 2 1 27 27 H 1.08997 * 109.46167 * 294.17499 * 3 2 1 28 28 H 1.08997 * 109.50192 * 299.23645 * 4 3 2 29 29 H 1.09002 * 109.53452 * 179.13423 * 4 3 2 30 30 H 1.08999 * 109.51706 * 182.43880 * 5 4 3 31 31 H 1.08996 * 109.57409 * 62.28162 * 5 4 3 32 32 H 1.09003 * 109.50498 * 297.71834 * 6 5 4 33 33 H 1.08994 * 109.53969 * 177.61732 * 6 5 4 34 34 H 1.08999 * 109.46855 * 56.23122 * 9 7 2 35 35 H 1.08991 * 109.47501 * 296.22554 * 9 7 2 36 36 H 1.08992 * 109.46781 * 61.78183 * 10 9 7 37 37 H 1.09004 * 109.47253 * 301.78028 * 10 9 7 38 38 H 0.96994 * 119.99535 * 174.98486 * 15 14 12 39 39 H 1.09000 * 115.54825 * 339.75363 * 20 11 10 40 40 H 1.08993 * 117.50212 * 359.97438 * 21 20 11 41 41 H 1.09003 * 117.49546 * 145.01778 * 21 20 11 42 42 H 1.09004 * 117.49828 * 214.98065 * 22 20 11 43 43 H 1.09000 * 117.49991 * 359.97195 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5369 -1.0144 6 6 3.5182 -0.8715 -1.0208 7 6 1.9953 -0.7708 -1.1337 8 1 1.7325 -0.2707 -2.0658 9 6 1.3891 -2.1756 -1.1202 10 6 1.8638 -2.9477 -2.3529 11 7 1.2499 -4.2778 -2.3623 12 6 0.0470 -4.4722 -2.9871 13 1 -0.6764 -5.1545 -2.5655 14 6 -0.2428 -3.7925 -4.1623 15 7 0.7333 -3.3015 -4.8962 16 14 -2.0178 -3.5746 -4.7020 17 1 -2.5573 -2.3139 -4.1321 18 1 -2.0805 -3.5145 -6.1845 19 1 -2.8266 -4.7223 -4.2185 20 6 1.9257 -5.4011 -1.7085 21 6 1.4199 -6.8103 -2.0239 22 6 1.1378 -6.1843 -0.6566 23 1 -0.3633 -1.0099 0.1899 24 1 -0.3632 0.6695 0.7797 25 1 -0.3633 0.3405 -0.9696 26 1 1.5635 1.9257 0.8330 27 1 1.7326 1.8608 -0.9376 28 1 3.7814 0.8567 1.0906 29 1 3.9106 2.3510 0.1314 30 1 5.1998 0.4713 -0.8905 31 1 3.8897 1.0350 -1.9564 32 1 3.7814 -1.3836 -0.0953 33 1 3.9098 -1.4310 -1.8703 34 1 0.3017 -2.1021 -1.1340 35 1 1.7065 -2.6997 -0.2188 36 1 2.9486 -3.0484 -2.3229 37 1 1.5738 -2.4073 -3.2541 38 1 0.5367 -2.8908 -5.7526 39 1 2.9960 -5.2751 -1.5451 40 1 0.5840 -6.9015 -2.7173 41 1 2.1575 -7.6116 -2.0680 42 1 1.6898 -6.5738 0.1988 43 1 0.1167 -5.8634 -0.4506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706821145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:45 Heat of formation + Delta-G solvation = 37.972525 kcal Electronic energy + Delta-G solvation = -19794.568033 eV Core-core repulsion = 17068.600341 eV Total energy + Delta-G solvation = -2725.967692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.02312 -36.95810 -33.98370 -33.30784 -32.26951 -30.20636 -27.53755 -26.20559 -24.59809 -22.98480 -22.11959 -21.30268 -20.29928 -19.74745 -19.22770 -16.38498 -15.51902 -15.35975 -14.86692 -14.35683 -14.30365 -13.97716 -13.93470 -13.61495 -12.88644 -12.83251 -12.26865 -11.99752 -11.75930 -11.69022 -11.40832 -11.19870 -11.03511 -10.83218 -10.71941 -10.54512 -10.52936 -10.36608 -10.08995 -9.93530 -9.84354 -9.69774 -9.26779 -9.16746 -8.41160 -7.98569 -6.43847 -5.80043 -3.35934 3.33015 3.40951 3.42388 4.20135 4.43581 4.98451 5.01073 5.05257 5.13887 5.29354 5.37515 5.39414 5.58145 5.70925 5.71806 5.78637 5.84800 5.96226 5.97035 6.07119 6.10186 6.15812 6.17475 6.22465 6.29170 6.39365 6.44571 6.50959 6.53452 6.63392 6.68219 6.74676 6.96751 7.03742 7.21101 7.23656 7.45432 7.50269 7.73612 7.84272 8.52814 9.18848 9.81876 10.38619 11.19554 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.007066 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.382766 B = 3961.776276 C = 4650.504856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.539 5.539 3 C 0.055 3.945 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.110 4.110 7 C 0.089 3.911 8 H 0.037 0.963 9 C -0.126 4.126 10 C 0.149 3.851 11 N -0.550 5.550 12 C -0.256 4.256 13 H 0.061 0.939 14 C 0.014 3.986 15 N -0.889 5.889 16 Si 0.897 3.103 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.277 1.277 20 C 0.129 3.871 21 C -0.199 4.199 22 C -0.228 4.228 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.026 0.974 37 H 0.096 0.904 38 H 0.256 0.744 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 6.942 8.131 11.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.073 4.073 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.148 4.148 7 C -0.019 4.019 8 H 0.055 0.945 9 C -0.166 4.166 10 C 0.023 3.977 11 N -0.266 5.266 12 C -0.386 4.386 13 H 0.079 0.921 14 C -0.186 4.186 15 N -0.531 5.531 16 Si 0.727 3.273 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.202 1.202 20 C 0.020 3.980 21 C -0.238 4.238 22 C -0.269 4.269 23 H 0.094 0.906 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.411 6.897 8.378 11.714 hybrid contribution -1.322 0.461 -1.053 1.752 sum 3.089 7.358 7.325 10.832 Atomic orbital electron populations 1.22364 0.87667 1.02691 0.99597 1.61987 1.07419 1.12475 1.44500 1.22063 0.95517 0.89993 0.99761 1.21563 0.94683 0.99536 0.99441 1.21605 0.99512 0.96683 0.98198 1.21652 0.94550 0.96112 1.02492 1.21672 0.94515 0.95238 0.90467 0.94484 1.22279 1.00681 0.92669 1.01007 1.21000 0.93678 0.85890 0.97122 1.43423 1.21183 1.01710 1.60305 1.18948 0.91297 1.25323 1.03045 0.92091 1.25180 0.97118 1.00912 0.95405 1.69889 1.30170 1.41993 1.11048 0.86374 0.85115 0.78366 0.77453 1.21290 1.21692 1.20225 1.21105 0.93199 0.86488 0.97245 1.23066 1.04225 0.97523 0.98996 1.23348 1.02532 1.08851 0.92165 0.90567 0.92378 0.95790 0.91445 0.95441 0.91347 0.92199 0.92208 0.92478 0.91523 0.90943 0.92123 0.92991 0.95594 0.88640 0.93404 0.89592 0.88442 0.90947 0.91053 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.89 60.07 0.53 0.91 16 2 N -0.54 -8.43 4.75 -234.92 -1.11 -9.55 16 3 C 0.05 0.73 5.46 -3.83 -0.02 0.71 16 4 C -0.11 -1.36 6.09 -26.65 -0.16 -1.53 16 5 C -0.12 -1.58 6.00 -26.61 -0.16 -1.73 16 6 C -0.11 -1.69 5.08 -26.65 -0.14 -1.82 16 7 C 0.09 1.55 1.91 -67.72 -0.13 1.42 16 8 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 9 C -0.13 -2.52 4.72 -26.73 -0.13 -2.65 16 10 C 0.15 3.42 5.02 -4.04 -0.02 3.40 16 11 N -0.55 -13.59 2.79 -165.67 -0.46 -14.06 16 12 C -0.26 -6.89 8.09 -15.06 -0.12 -7.01 16 13 H 0.06 1.67 7.18 -52.48 -0.38 1.29 16 14 C 0.01 0.38 4.97 -17.43 -0.09 0.30 16 15 N -0.89 -25.14 11.38 55.49 0.63 -24.51 16 16 Si 0.90 21.47 29.61 -169.99 -5.03 16.44 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.13 2.83 6.61 -67.93 -0.45 2.38 16 21 C -0.20 -4.09 9.80 -26.73 -0.26 -4.35 16 22 C -0.23 -4.50 10.09 -26.73 -0.27 -4.77 16 23 H 0.08 1.23 6.53 -51.93 -0.34 0.89 16 24 H 0.06 0.74 7.97 -51.93 -0.41 0.33 16 25 H 0.02 0.38 8.12 -51.93 -0.42 -0.05 16 26 H 0.07 0.80 8.01 -51.93 -0.42 0.38 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.16 6.61 -51.93 -0.34 0.81 16 34 H 0.06 1.32 6.25 -51.93 -0.32 0.99 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.03 0.56 6.52 -51.93 -0.34 0.23 16 37 H 0.10 2.49 5.43 -51.93 -0.28 2.21 16 38 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 39 H 0.09 1.74 8.10 -51.93 -0.42 1.32 16 40 H 0.10 2.21 6.92 -51.93 -0.36 1.85 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.08 1.76 8.02 -51.93 -0.42 1.34 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -27.80 327.99 -10.26 -38.07 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -7.82 Total: 3.42 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.41 Total: -14.75 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.95 Total: -48.12 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.80 -10.26 -38.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706821145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.038 kcal (2) G-P(sol) polarization free energy of solvation -27.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds