Wall clock time and date at job start Mon Mar 30 2020 03:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46848 * 110.99969 * 2 1 4 4 C 1.53041 * 109.52090 * 174.16022 * 3 2 1 5 5 C 1.53121 * 109.27533 * 59.17946 * 4 3 2 6 6 C 1.53114 * 109.16102 * 302.34072 * 5 4 3 7 7 C 1.46846 * 110.99947 * 235.78836 * 2 1 3 8 8 H 1.08994 * 109.45238 * 65.82844 * 7 2 1 9 9 C 1.53006 * 109.45922 * 305.85355 * 7 2 1 10 10 C 1.53002 * 109.46789 * 176.22525 * 9 7 2 11 11 N 1.46494 * 109.47080 * 181.78141 * 10 9 7 12 12 C 1.36938 * 119.99970 * 90.00347 * 11 10 9 13 13 H 1.08005 * 119.99806 * 216.65350 * 12 11 10 14 14 C 1.38817 * 120.00262 * 36.65080 * 12 11 10 15 15 N 1.31619 * 119.99487 * 21.04586 * 14 12 11 16 16 Si 1.86799 * 120.00194 * 201.04344 * 14 12 11 17 17 H 1.48502 * 109.47239 * 89.99959 * 16 14 12 18 18 H 1.48501 * 109.47093 * 210.00185 * 16 14 12 19 19 H 1.48500 * 109.47127 * 330.00102 * 16 14 12 20 20 C 1.46497 * 120.00124 * 269.72795 * 11 10 9 21 21 C 1.53004 * 117.49851 * 194.04814 * 20 11 10 22 22 C 1.52997 * 117.50072 * 125.42663 * 20 11 10 23 23 H 1.08993 * 109.47339 * 190.65037 * 1 2 3 24 24 H 1.09004 * 109.46574 * 310.65042 * 1 2 3 25 25 H 1.08996 * 109.47057 * 70.64851 * 1 2 3 26 26 H 1.08998 * 109.46255 * 54.14476 * 3 2 1 27 27 H 1.08997 * 109.46167 * 294.17499 * 3 2 1 28 28 H 1.08997 * 109.50192 * 299.23645 * 4 3 2 29 29 H 1.09002 * 109.53452 * 179.13423 * 4 3 2 30 30 H 1.08999 * 109.51706 * 182.43880 * 5 4 3 31 31 H 1.08996 * 109.57409 * 62.28162 * 5 4 3 32 32 H 1.09003 * 109.50498 * 297.71834 * 6 5 4 33 33 H 1.08994 * 109.53969 * 177.61732 * 6 5 4 34 34 H 1.08999 * 109.46855 * 56.23122 * 9 7 2 35 35 H 1.08991 * 109.47501 * 296.22554 * 9 7 2 36 36 H 1.08992 * 109.46781 * 61.78183 * 10 9 7 37 37 H 1.09004 * 109.47253 * 301.78028 * 10 9 7 38 38 H 0.96994 * 119.99535 * 174.98486 * 15 14 12 39 39 H 1.09000 * 115.54825 * 339.75363 * 20 11 10 40 40 H 1.08993 * 117.50212 * 359.97438 * 21 20 11 41 41 H 1.09003 * 117.49546 * 145.01778 * 21 20 11 42 42 H 1.09004 * 117.49828 * 214.98065 * 22 20 11 43 43 H 1.09000 * 117.49991 * 359.97195 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5369 -1.0144 6 6 3.5182 -0.8715 -1.0208 7 6 1.9953 -0.7708 -1.1337 8 1 1.7325 -0.2707 -2.0658 9 6 1.3891 -2.1756 -1.1202 10 6 1.8638 -2.9477 -2.3529 11 7 1.2499 -4.2778 -2.3623 12 6 0.0470 -4.4722 -2.9871 13 1 -0.6764 -5.1545 -2.5655 14 6 -0.2428 -3.7925 -4.1623 15 7 0.7333 -3.3015 -4.8962 16 14 -2.0178 -3.5746 -4.7020 17 1 -2.5573 -2.3139 -4.1321 18 1 -2.0805 -3.5145 -6.1845 19 1 -2.8266 -4.7223 -4.2185 20 6 1.9257 -5.4011 -1.7085 21 6 1.4199 -6.8103 -2.0239 22 6 1.1378 -6.1843 -0.6566 23 1 -0.3633 -1.0099 0.1899 24 1 -0.3632 0.6695 0.7797 25 1 -0.3633 0.3405 -0.9696 26 1 1.5635 1.9257 0.8330 27 1 1.7326 1.8608 -0.9376 28 1 3.7814 0.8567 1.0906 29 1 3.9106 2.3510 0.1314 30 1 5.1998 0.4713 -0.8905 31 1 3.8897 1.0350 -1.9564 32 1 3.7814 -1.3836 -0.0953 33 1 3.9098 -1.4310 -1.8703 34 1 0.3017 -2.1021 -1.1340 35 1 1.7065 -2.6997 -0.2188 36 1 2.9486 -3.0484 -2.3229 37 1 1.5738 -2.4073 -3.2541 38 1 0.5367 -2.8908 -5.7526 39 1 2.9960 -5.2751 -1.5451 40 1 0.5840 -6.9015 -2.7173 41 1 2.1575 -7.6116 -2.0680 42 1 1.6898 -6.5738 0.1988 43 1 0.1167 -5.8634 -0.4506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706821145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:44 Heat of formation + Delta-G solvation = 23.042632 kcal Electronic energy + Delta-G solvation = -19795.215442 eV Core-core repulsion = 17068.600341 eV Total energy + Delta-G solvation = -2726.615101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.30136 -38.70168 -35.67706 -34.48214 -33.97930 -31.95345 -29.04889 -27.50329 -26.44607 -24.41085 -23.45246 -22.93643 -21.75799 -21.48720 -20.53237 -18.29048 -17.31063 -16.71948 -16.26796 -16.07039 -15.81997 -15.44996 -15.13468 -15.00941 -14.54151 -14.08226 -13.70355 -13.56644 -13.41705 -13.17731 -12.86661 -12.73706 -12.65645 -12.53400 -12.25067 -12.15040 -12.04130 -11.91188 -11.57650 -11.53841 -11.40940 -11.12800 -10.90546 -10.83174 -10.42079 -9.26596 -8.42524 -7.83521 -5.44364 1.39628 1.42625 1.50339 2.44361 2.96397 3.14128 3.46659 3.52711 3.89498 3.98149 4.02679 4.19356 4.31012 4.38588 4.46191 4.49700 4.50146 4.55193 4.61493 4.65884 4.74759 4.84686 4.90093 4.95426 4.96798 5.05280 5.06585 5.10052 5.12185 5.14173 5.27253 5.33919 5.37088 5.51318 5.52163 5.55598 5.66450 5.87036 6.15202 6.25187 6.46889 7.15513 7.86990 8.37067 9.11036 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.007066 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.382766 B = 3961.776276 C = 4650.504856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.051 3.949 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.107 4.107 7 C 0.097 3.903 8 H 0.012 0.988 9 C -0.106 4.106 10 C 0.155 3.845 11 N -0.569 5.569 12 C -0.257 4.257 13 H 0.051 0.949 14 C -0.033 4.033 15 N -0.916 5.916 16 Si 0.952 3.048 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.271 1.271 20 C 0.102 3.898 21 C -0.196 4.196 22 C -0.204 4.204 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.010 0.990 26 H 0.088 0.912 27 H 0.021 0.979 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.036 0.964 35 H 0.052 0.948 36 H 0.033 0.967 37 H 0.063 0.937 38 H 0.252 0.748 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.053 7.462 9.893 13.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.267 5.267 3 C -0.077 4.077 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.144 4.144 7 C -0.012 4.012 8 H 0.030 0.970 9 C -0.146 4.146 10 C 0.029 3.971 11 N -0.286 5.286 12 C -0.388 4.388 13 H 0.069 0.931 14 C -0.230 4.230 15 N -0.560 5.560 16 Si 0.780 3.220 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.196 1.196 20 C -0.007 4.007 21 C -0.235 4.235 22 C -0.245 4.245 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.028 0.972 26 H 0.107 0.893 27 H 0.039 0.961 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.202 7.406 10.166 13.611 hybrid contribution -1.548 0.258 -1.553 2.207 sum 3.655 7.664 8.613 12.094 Atomic orbital electron populations 1.22362 0.87650 1.02381 0.99804 1.62014 1.07564 1.14067 1.43049 1.22225 0.96760 0.88410 1.00314 1.21565 0.93382 1.00885 0.98867 1.21600 1.00661 0.94898 0.98597 1.21597 0.92862 0.97983 1.02002 1.21499 0.95968 0.93541 0.90228 0.96958 1.21980 0.99079 0.94174 0.99369 1.20865 0.93901 0.85453 0.96891 1.43612 1.21091 1.03138 1.60744 1.19026 0.92183 1.24719 1.02824 0.93117 1.25786 1.00210 1.01283 0.95716 1.70015 1.31638 1.43119 1.11257 0.85510 0.81411 0.78205 0.76845 1.21320 1.21690 1.19557 1.21395 0.94273 0.86306 0.98689 1.23061 1.03863 0.97579 0.99012 1.23288 1.01511 1.06975 0.92717 0.92163 0.89557 0.97179 0.89339 0.96074 0.91009 0.89583 0.90177 0.93037 0.91226 0.92199 0.94533 0.92961 0.94890 0.91960 0.93822 0.87853 0.91188 0.87954 0.87617 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 8.89 127.69 1.13 1.92 16 2 N -0.54 -16.44 4.75 -897.16 -4.26 -20.70 16 3 C 0.05 1.23 5.46 86.33 0.47 1.70 16 4 C -0.11 -2.27 6.09 30.65 0.19 -2.09 16 5 C -0.12 -2.85 6.00 30.67 0.18 -2.66 16 6 C -0.11 -3.18 5.08 30.64 0.16 -3.03 16 7 C 0.10 3.37 1.91 44.94 0.09 3.45 16 8 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 9 C -0.11 -4.33 4.72 30.60 0.14 -4.19 16 10 C 0.15 7.31 5.02 86.38 0.43 7.74 16 11 N -0.57 -28.59 2.79 -678.04 -1.89 -30.48 16 12 C -0.26 -14.14 8.09 84.03 0.68 -13.47 16 13 H 0.05 2.85 7.18 -2.91 -0.02 2.83 16 14 C -0.03 -1.82 4.97 84.86 0.42 -1.40 16 15 N -0.92 -53.47 11.38 21.65 0.25 -53.22 16 16 Si 0.95 45.14 29.61 68.60 2.03 47.17 16 17 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 C 0.10 4.37 6.61 44.99 0.30 4.67 16 21 C -0.20 -7.84 9.80 30.59 0.30 -7.54 16 22 C -0.20 -7.70 10.09 30.59 0.31 -7.40 16 23 H 0.06 1.97 6.53 -2.39 -0.02 1.95 16 24 H 0.09 2.06 7.97 -2.38 -0.02 2.04 16 25 H 0.01 0.31 8.12 -2.39 -0.02 0.29 16 26 H 0.09 1.80 8.01 -2.39 -0.02 1.78 16 27 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 1.91 6.61 -2.39 -0.02 1.90 16 34 H 0.04 1.64 6.25 -2.39 -0.01 1.63 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 36 H 0.03 1.47 6.52 -2.39 -0.02 1.45 16 37 H 0.06 3.41 5.43 -2.38 -0.01 3.39 16 38 H 0.25 14.28 8.32 -92.71 -0.77 13.50 16 39 H 0.10 4.03 8.10 -2.39 -0.02 4.01 16 40 H 0.07 3.19 6.92 -2.39 -0.02 3.17 16 41 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 42 H 0.11 3.28 8.14 -2.38 -0.02 3.26 16 43 H 0.07 2.73 8.02 -2.39 -0.02 2.71 16 Total: -1.00 -60.76 327.99 1.88 -58.88 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.95 Total: 20.64 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 4.80 Total: -22.28 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -5.90 Total: -104.41 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -60.76 1.88 -58.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706821145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.921 kcal (2) G-P(sol) polarization free energy of solvation -60.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds