Wall clock time and date at job start Mon Mar 30 2020 04:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 110.99916 * 2 1 4 4 C 1.53007 * 109.47215 * 293.95610 * 3 2 1 5 5 C 1.50704 * 109.46880 * 179.97438 * 4 3 2 6 6 H 1.08003 * 120.00198 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99455 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99582 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00361 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47275 * 270.00093 * 9 7 5 11 11 H 1.48501 * 109.47471 * 150.00275 * 9 7 5 12 12 H 1.48496 * 109.46967 * 29.99891 * 9 7 5 13 13 C 1.46895 * 111.00267 * 123.95948 * 2 1 3 14 14 C 1.52995 * 109.47371 * 83.56576 * 13 2 1 15 15 C 1.54994 * 113.20047 * 176.35400 * 14 13 2 16 16 C 1.56385 * 103.65836 * 147.03926 * 15 14 13 17 17 N 1.48245 * 106.91537 * 1.07401 * 16 15 14 18 18 C 1.48809 * 105.17409 * 332.47325 * 17 16 15 19 19 C 1.47681 * 108.91430 * 88.12491 * 17 16 15 20 20 C 1.52994 * 109.28449 * 312.91915 * 19 17 16 21 21 C 1.53152 * 110.09097 * 304.78861 * 20 19 17 22 22 H 1.08999 * 109.47826 * 66.35324 * 1 2 3 23 23 H 1.08996 * 109.47060 * 186.35516 * 1 2 3 24 24 H 1.09001 * 109.47104 * 306.35315 * 1 2 3 25 25 H 1.09000 * 109.47167 * 173.95839 * 3 2 1 26 26 H 1.09001 * 109.47347 * 53.95624 * 3 2 1 27 27 H 1.08995 * 109.46882 * 60.00530 * 4 3 2 28 28 H 1.08996 * 109.46997 * 299.99771 * 4 3 2 29 29 H 0.96999 * 119.99992 * 179.97438 * 8 7 5 30 30 H 1.09008 * 109.46885 * 203.57036 * 13 2 1 31 31 H 1.08998 * 109.47085 * 323.56620 * 13 2 1 32 32 H 1.09001 * 110.38207 * 265.30052 * 15 14 13 33 33 H 1.09001 * 110.37891 * 27.65931 * 15 14 13 34 34 H 1.09000 * 109.94866 * 241.67447 * 16 15 14 35 35 H 1.09006 * 109.86866 * 120.42888 * 16 15 14 36 36 H 1.08994 * 111.68381 * 284.22508 * 18 17 16 37 37 H 1.08996 * 110.17407 * 160.55914 * 18 17 16 38 38 H 1.09000 * 109.50065 * 192.97512 * 19 17 16 39 39 H 1.09002 * 109.53096 * 72.87814 * 19 17 16 40 40 H 1.08999 * 109.36609 * 184.59588 * 20 19 17 41 41 H 1.09005 * 109.36408 * 64.97753 * 20 19 17 42 42 H 1.09003 * 109.62842 * 294.29005 * 21 20 19 43 43 H 1.09003 * 109.62702 * 173.70305 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0575 -1.3183 5 6 2.1709 3.4646 -1.3180 6 1 2.7190 3.8326 -0.4632 7 6 1.9647 4.2821 -2.4089 8 7 2.4360 5.5099 -2.4089 9 14 1.0161 3.6459 -3.8870 10 1 1.9590 3.0189 -4.8478 11 1 0.3139 4.7751 -4.5480 12 1 0.0215 2.6378 -3.4402 13 6 1.9955 -0.7661 1.1375 14 6 2.0274 -2.2533 0.7798 15 6 2.6542 -3.1349 1.8898 16 6 1.8656 -4.4811 1.7815 17 7 0.9021 -4.3279 0.6652 18 6 0.6139 -2.8696 0.5968 19 6 1.5625 -4.7244 -0.5948 20 6 2.9391 -4.0616 -0.6741 21 6 2.8021 -2.5441 -0.5192 22 1 -0.3635 0.4122 -0.9413 23 1 -0.3633 -1.0213 0.1137 24 1 -0.3633 0.6092 0.8277 25 1 3.0797 1.3444 0.1082 26 1 1.5611 1.9273 0.8309 27 1 0.5471 2.0845 -1.4264 28 1 2.0657 1.5016 -2.1492 29 1 2.2913 6.0850 -3.1765 30 1 3.0051 -0.4260 1.3683 31 1 1.3538 -0.6148 2.0055 32 1 3.7137 -3.2977 1.6923 33 1 2.5161 -2.6708 2.8664 34 1 1.3312 -4.6749 2.7115 35 1 2.5551 -5.2983 1.5697 36 1 -0.0553 -2.5534 1.3968 37 1 0.2008 -2.6135 -0.3788 38 1 0.9547 -4.4033 -1.4408 39 1 1.6783 -5.8079 -0.6203 40 1 3.3937 -4.2869 -1.6389 41 1 3.5739 -4.4504 0.1221 42 1 2.2560 -2.1369 -1.3702 43 1 3.7919 -2.0908 -0.4647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709461048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:56 Heat of formation + Delta-G solvation = 9.984136 kcal Electronic energy + Delta-G solvation = -19742.036920 eV Core-core repulsion = 17014.855560 eV Total energy + Delta-G solvation = -2727.181359 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96745 -37.14512 -33.31698 -32.26957 -32.07583 -30.23835 -28.91164 -27.14739 -25.46736 -24.29577 -22.67525 -21.86366 -20.39981 -19.83506 -18.85877 -16.85101 -16.35489 -15.70637 -14.95558 -14.74149 -14.56056 -14.13931 -13.77106 -13.32499 -13.26258 -12.89190 -12.74413 -12.53111 -12.48470 -12.16165 -11.86892 -11.46641 -11.36803 -11.14726 -11.13218 -10.87793 -10.84219 -10.60159 -10.46730 -10.29938 -10.07810 -9.74042 -9.62655 -9.19417 -8.52953 -8.52239 -7.81314 -6.03819 -4.01745 3.32848 3.39764 3.44501 3.92852 4.28098 4.46743 4.52592 4.74540 4.78187 4.93450 5.02606 5.10347 5.26568 5.30994 5.39169 5.45543 5.47401 5.58468 5.61919 5.71355 5.76153 5.78167 5.81342 5.89493 5.90870 5.94974 6.05865 6.17970 6.21694 6.28590 6.34312 6.36849 6.48529 6.72100 6.78581 6.85905 7.17277 7.33855 7.60800 7.64268 7.86778 8.53919 9.00384 9.58942 11.09687 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036242 B = 0.004837 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.409084 B = 5787.525926 C = 5989.791515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.541 5.541 3 C 0.072 3.928 4 C -0.006 4.006 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.882 3.118 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.077 3.923 14 C -0.084 4.084 15 C -0.141 4.141 16 C 0.030 3.970 17 N -0.501 5.501 18 C 0.039 3.961 19 C 0.035 3.965 20 C -0.158 4.158 21 C -0.097 4.097 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.021 0.979 25 H 0.064 0.936 26 H 0.025 0.975 27 H 0.015 0.985 28 H 0.019 0.981 29 H 0.263 0.737 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 -20.623 6.833 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.265 5.265 3 C -0.055 4.055 4 C -0.044 4.044 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.709 3.291 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.052 4.052 14 C -0.086 4.086 15 C -0.181 4.181 16 C -0.099 4.099 17 N -0.221 5.221 18 C -0.089 4.089 19 C -0.094 4.094 20 C -0.196 4.196 21 C -0.135 4.135 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.917 -21.065 6.366 22.089 hybrid contribution 0.156 0.808 -0.230 0.854 sum -1.760 -20.257 6.136 21.239 Atomic orbital electron populations 1.22642 0.88280 1.00997 1.01386 1.61984 1.07398 1.15674 1.41419 1.22180 0.98843 0.85116 0.99374 1.19549 0.96534 0.95494 0.92826 1.21100 1.35469 0.95610 1.03776 0.91218 1.24993 0.95304 0.94672 0.98392 1.69916 1.46366 1.07208 1.30893 0.86746 0.80768 0.78532 0.83035 1.20272 1.21516 1.18995 1.21818 0.99944 0.91614 0.91853 1.22373 0.96191 0.94669 0.95364 1.23337 0.99937 0.95890 0.98919 1.23448 0.94012 0.96893 0.95519 1.66434 1.35335 1.17224 1.03146 1.23723 0.96057 0.86778 1.02369 1.22556 0.93981 0.99714 0.93125 1.22299 0.98232 0.97055 1.02037 1.21656 1.00411 0.93832 0.97582 0.91142 0.91509 0.96032 0.91716 0.95684 0.96644 0.96272 0.92755 0.91217 0.94650 0.91179 0.91451 0.90641 0.91340 0.90423 0.89668 0.90748 0.91001 0.91780 0.91795 0.90506 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.92 60.06 0.54 0.77 16 2 N -0.54 -8.97 4.12 -242.92 -1.00 -9.97 16 3 C 0.07 1.44 4.84 -3.82 -0.02 1.42 16 4 C -0.01 -0.15 3.96 -27.88 -0.11 -0.26 16 5 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 6 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 9 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 13 C 0.08 1.05 4.61 -3.83 -0.02 1.04 16 14 C -0.08 -0.99 0.88 -151.72 -0.13 -1.12 16 15 C -0.14 -1.43 5.70 -23.86 -0.14 -1.56 16 16 C 0.03 0.29 6.25 -1.26 -0.01 0.28 16 17 N -0.50 -5.55 6.07 -227.43 -1.38 -6.93 16 18 C 0.04 0.45 4.08 -1.55 -0.01 0.44 16 19 C 0.03 0.36 5.84 -3.40 -0.02 0.34 16 20 C -0.16 -1.61 5.52 -26.66 -0.15 -1.75 16 21 C -0.10 -1.20 4.65 -26.12 -0.12 -1.32 16 22 H 0.07 1.18 6.78 -51.93 -0.35 0.83 16 23 H 0.07 0.87 4.22 -51.93 -0.22 0.65 16 24 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 25 H 0.06 1.31 7.79 -51.93 -0.40 0.91 16 26 H 0.02 0.51 8.06 -51.93 -0.42 0.10 16 27 H 0.02 0.37 5.75 -51.93 -0.30 0.07 16 28 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.07 0.98 7.60 -51.92 -0.39 0.58 16 31 H 0.04 0.47 7.88 -51.93 -0.41 0.06 16 32 H 0.07 0.69 6.94 -51.93 -0.36 0.33 16 33 H 0.07 0.65 8.01 -51.93 -0.42 0.24 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.61 6.94 -51.93 -0.36 0.24 16 36 H 0.08 0.90 7.82 -51.93 -0.41 0.50 16 37 H 0.09 1.06 6.45 -51.93 -0.34 0.73 16 38 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.62 5.37 -51.93 -0.28 0.34 16 42 H 0.08 1.09 7.91 -51.93 -0.41 0.68 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -30.02 312.59 -9.74 -39.76 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -7.56 Total: -2.46 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -0.61 Total: -15.14 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -1.61 Total: -44.24 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.02 -9.74 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709461048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.743 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds