Wall clock time and date at job start Mon Mar 30 2020 04:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 110.99916 * 2 1 4 4 C 1.53007 * 109.47215 * 293.95610 * 3 2 1 5 5 C 1.50704 * 109.46880 * 179.97438 * 4 3 2 6 6 H 1.08003 * 120.00198 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99455 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99582 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00361 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47275 * 270.00093 * 9 7 5 11 11 H 1.48501 * 109.47471 * 150.00275 * 9 7 5 12 12 H 1.48496 * 109.46967 * 29.99891 * 9 7 5 13 13 C 1.46895 * 111.00267 * 123.95948 * 2 1 3 14 14 C 1.52995 * 109.47371 * 83.56576 * 13 2 1 15 15 C 1.54994 * 113.20047 * 176.35400 * 14 13 2 16 16 C 1.56385 * 103.65836 * 147.03926 * 15 14 13 17 17 N 1.48245 * 106.91537 * 1.07401 * 16 15 14 18 18 C 1.48809 * 105.17409 * 332.47325 * 17 16 15 19 19 C 1.47681 * 108.91430 * 88.12491 * 17 16 15 20 20 C 1.52994 * 109.28449 * 312.91915 * 19 17 16 21 21 C 1.53152 * 110.09097 * 304.78861 * 20 19 17 22 22 H 1.08999 * 109.47826 * 66.35324 * 1 2 3 23 23 H 1.08996 * 109.47060 * 186.35516 * 1 2 3 24 24 H 1.09001 * 109.47104 * 306.35315 * 1 2 3 25 25 H 1.09000 * 109.47167 * 173.95839 * 3 2 1 26 26 H 1.09001 * 109.47347 * 53.95624 * 3 2 1 27 27 H 1.08995 * 109.46882 * 60.00530 * 4 3 2 28 28 H 1.08996 * 109.46997 * 299.99771 * 4 3 2 29 29 H 0.96999 * 119.99992 * 179.97438 * 8 7 5 30 30 H 1.09008 * 109.46885 * 203.57036 * 13 2 1 31 31 H 1.08998 * 109.47085 * 323.56620 * 13 2 1 32 32 H 1.09001 * 110.38207 * 265.30052 * 15 14 13 33 33 H 1.09001 * 110.37891 * 27.65931 * 15 14 13 34 34 H 1.09000 * 109.94866 * 241.67447 * 16 15 14 35 35 H 1.09006 * 109.86866 * 120.42888 * 16 15 14 36 36 H 1.08994 * 111.68381 * 284.22508 * 18 17 16 37 37 H 1.08996 * 110.17407 * 160.55914 * 18 17 16 38 38 H 1.09000 * 109.50065 * 192.97512 * 19 17 16 39 39 H 1.09002 * 109.53096 * 72.87814 * 19 17 16 40 40 H 1.08999 * 109.36609 * 184.59588 * 20 19 17 41 41 H 1.09005 * 109.36408 * 64.97753 * 20 19 17 42 42 H 1.09003 * 109.62842 * 294.29005 * 21 20 19 43 43 H 1.09003 * 109.62702 * 173.70305 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0575 -1.3183 5 6 2.1709 3.4646 -1.3180 6 1 2.7190 3.8326 -0.4632 7 6 1.9647 4.2821 -2.4089 8 7 2.4360 5.5099 -2.4089 9 14 1.0161 3.6459 -3.8870 10 1 1.9590 3.0189 -4.8478 11 1 0.3139 4.7751 -4.5480 12 1 0.0215 2.6378 -3.4402 13 6 1.9955 -0.7661 1.1375 14 6 2.0274 -2.2533 0.7798 15 6 2.6542 -3.1349 1.8898 16 6 1.8656 -4.4811 1.7815 17 7 0.9021 -4.3279 0.6652 18 6 0.6139 -2.8696 0.5968 19 6 1.5625 -4.7244 -0.5948 20 6 2.9391 -4.0616 -0.6741 21 6 2.8021 -2.5441 -0.5192 22 1 -0.3635 0.4122 -0.9413 23 1 -0.3633 -1.0213 0.1137 24 1 -0.3633 0.6092 0.8277 25 1 3.0797 1.3444 0.1082 26 1 1.5611 1.9273 0.8309 27 1 0.5471 2.0845 -1.4264 28 1 2.0657 1.5016 -2.1492 29 1 2.2913 6.0850 -3.1765 30 1 3.0051 -0.4260 1.3683 31 1 1.3538 -0.6148 2.0055 32 1 3.7137 -3.2977 1.6923 33 1 2.5161 -2.6708 2.8664 34 1 1.3312 -4.6749 2.7115 35 1 2.5551 -5.2983 1.5697 36 1 -0.0553 -2.5534 1.3968 37 1 0.2008 -2.6135 -0.3788 38 1 0.9547 -4.4033 -1.4408 39 1 1.6783 -5.8079 -0.6203 40 1 3.3937 -4.2869 -1.6389 41 1 3.5739 -4.4504 0.1221 42 1 2.2560 -2.1369 -1.3702 43 1 3.7919 -2.0908 -0.4647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709461048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:56 Heat of formation + Delta-G solvation = -10.755871 kcal Electronic energy + Delta-G solvation = -19742.936274 eV Core-core repulsion = 17014.855560 eV Total energy + Delta-G solvation = -2728.080714 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.85944 -38.50910 -35.23650 -33.61348 -32.94335 -31.86738 -29.94762 -28.34555 -27.04252 -25.39102 -23.83333 -23.12165 -21.57968 -21.19424 -19.80433 -18.99934 -17.24721 -16.71949 -16.35150 -16.24837 -15.97070 -15.41580 -15.00921 -14.79672 -14.58937 -14.27992 -13.78799 -13.74542 -13.52374 -13.33620 -13.06963 -12.92373 -12.83436 -12.57471 -12.20901 -12.06197 -11.97127 -11.74873 -11.67876 -11.59500 -11.52241 -11.36924 -11.16895 -11.10646 -10.77069 -9.39539 -9.15486 -8.31145 -6.35159 1.35573 1.36457 1.49269 2.35257 2.95882 3.04741 3.17359 3.64012 3.81815 3.83166 4.10753 4.18213 4.27703 4.30785 4.35013 4.39357 4.48781 4.54687 4.60161 4.62343 4.67429 4.80054 4.81445 4.89800 4.94018 4.96464 4.97863 5.05495 5.08660 5.10186 5.20480 5.28149 5.31527 5.37679 5.47836 5.52108 5.61824 5.88380 6.05412 6.13261 6.25983 6.32223 6.72700 7.29745 8.85719 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036242 B = 0.004837 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.409084 B = 5787.525926 C = 5989.791515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.543 5.543 3 C 0.084 3.916 4 C 0.002 3.998 5 C -0.533 4.533 6 H 0.031 0.969 7 C 0.008 3.992 8 N -0.951 5.951 9 Si 0.952 3.048 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.248 1.248 13 C 0.078 3.922 14 C -0.082 4.082 15 C -0.136 4.136 16 C 0.032 3.968 17 N -0.508 5.508 18 C 0.041 3.959 19 C 0.035 3.965 20 C -0.150 4.150 21 C -0.096 4.096 22 H 0.055 0.945 23 H 0.092 0.908 24 H 0.021 0.979 25 H 0.058 0.942 26 H 0.016 0.984 27 H 0.019 0.981 28 H 0.018 0.982 29 H 0.267 0.733 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.370 -23.263 6.770 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.267 5.267 3 C -0.044 4.044 4 C -0.036 4.036 5 C -0.572 4.572 6 H 0.050 0.950 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.775 3.225 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.172 1.172 13 C -0.051 4.051 14 C -0.084 4.084 15 C -0.175 4.175 16 C -0.097 4.097 17 N -0.229 5.229 18 C -0.087 4.087 19 C -0.093 4.093 20 C -0.189 4.189 21 C -0.134 4.134 22 H 0.074 0.926 23 H 0.111 0.889 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.735 -23.730 6.322 24.710 hybrid contribution 0.461 1.652 -0.135 1.720 sum -2.274 -22.079 6.187 23.041 Atomic orbital electron populations 1.22674 0.87352 1.02564 1.00590 1.61912 1.08247 1.13340 1.43190 1.21862 0.98552 0.87015 0.96930 1.19408 0.96217 0.93069 0.94885 1.21434 1.35090 0.98015 1.02640 0.95047 1.25957 0.96384 0.94736 1.01845 1.70061 1.48084 1.08790 1.32216 0.85637 0.79654 0.78397 0.78812 1.19266 1.20851 1.17208 1.21871 0.99624 0.92484 0.91087 1.22310 0.96783 0.93439 0.95916 1.23304 1.00113 0.95720 0.98352 1.23491 0.93966 0.96844 0.95358 1.66440 1.36136 1.16410 1.03887 1.23643 0.95710 0.87456 1.01867 1.22588 0.93569 1.00542 0.92634 1.22235 0.98620 0.95280 1.02736 1.21611 0.99414 0.95379 0.96994 0.92574 0.88929 0.96015 0.92354 0.96539 0.96318 0.96390 0.92436 0.91709 0.93782 0.90735 0.90856 0.89902 0.90095 0.90161 0.90670 0.91352 0.89498 0.91274 0.90790 0.92694 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 8.92 127.69 1.14 1.61 16 2 N -0.54 -17.56 4.12 -922.47 -3.80 -21.37 16 3 C 0.08 3.40 4.84 86.31 0.42 3.82 16 4 C 0.00 0.10 3.96 29.85 0.12 0.21 16 5 C -0.53 -31.40 9.66 25.60 0.25 -31.15 16 6 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 7 C 0.01 0.46 5.47 84.66 0.46 0.92 16 8 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 9 Si 0.95 45.26 27.47 68.60 1.88 47.15 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.25 -11.06 6.54 99.48 0.65 -10.40 16 13 C 0.08 2.04 4.61 86.30 0.40 2.44 16 14 C -0.08 -1.79 0.88 -50.37 -0.04 -1.84 16 15 C -0.14 -2.37 5.70 32.46 0.18 -2.19 16 16 C 0.03 0.52 6.25 87.22 0.55 1.06 16 17 N -0.51 -9.88 6.07 -873.44 -5.30 -15.18 16 18 C 0.04 0.87 4.08 86.72 0.35 1.23 16 19 C 0.04 0.63 5.84 86.15 0.50 1.13 16 20 C -0.15 -2.72 5.52 30.64 0.17 -2.55 16 21 C -0.10 -2.24 4.65 30.99 0.14 -2.10 16 22 H 0.06 1.81 6.78 -2.39 -0.02 1.79 16 23 H 0.09 2.23 4.22 -2.39 -0.01 2.22 16 24 H 0.02 0.63 8.05 -2.39 -0.02 0.61 16 25 H 0.06 2.41 7.79 -2.39 -0.02 2.39 16 26 H 0.02 0.68 8.06 -2.39 -0.02 0.67 16 27 H 0.02 0.89 5.75 -2.39 -0.01 0.87 16 28 H 0.02 0.86 7.57 -2.39 -0.02 0.85 16 29 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 30 H 0.06 1.76 7.60 -2.38 -0.02 1.75 16 31 H 0.04 1.09 7.88 -2.39 -0.02 1.07 16 32 H 0.07 1.26 6.94 -2.39 -0.02 1.24 16 33 H 0.07 1.22 8.01 -2.39 -0.02 1.20 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.13 6.94 -2.38 -0.02 1.11 16 36 H 0.08 1.66 7.82 -2.39 -0.02 1.64 16 37 H 0.07 1.74 6.45 -2.39 -0.02 1.73 16 38 H 0.07 1.30 7.84 -2.39 -0.02 1.28 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 1.21 5.37 -2.38 -0.01 1.20 16 42 H 0.05 1.52 7.91 -2.39 -0.02 1.50 16 43 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -64.85 312.59 -1.38 -66.23 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.90 Total: 10.68 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 4.64 Total: -27.41 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -8.80 Total: -96.65 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Total: -64.85 -1.38 -66.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709461048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.473 kcal (2) G-P(sol) polarization free energy of solvation -64.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds