Wall clock time and date at job start Mon Mar 30 2020 04:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00460 * 2 1 4 4 C 1.53001 * 109.47404 * 293.95924 * 3 2 1 5 5 C 1.53006 * 109.47082 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46756 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00505 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99846 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00196 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00125 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46977 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47555 * 120.00175 * 10 8 6 13 13 H 1.48500 * 109.46845 * 240.00304 * 10 8 6 14 14 C 1.46894 * 111.00209 * 123.96111 * 2 1 3 15 15 C 1.53005 * 109.47535 * 77.97357 * 14 2 1 16 16 C 1.56239 * 116.68873 * 54.17581 * 15 14 2 17 17 C 1.54660 * 103.36498 * 159.81784 * 16 15 14 18 18 N 1.49913 * 105.09139 * 0.78459 * 17 16 15 19 19 C 1.49521 * 106.01466 * 71.15898 * 18 17 16 20 20 C 1.54649 * 105.28669 * 288.72645 * 19 18 17 21 21 C 1.50465 * 102.02087 * 324.72650 * 18 17 16 22 22 H 1.09007 * 109.46860 * 300.62568 * 1 2 3 23 23 H 1.08999 * 109.47252 * 60.62206 * 1 2 3 24 24 H 1.08997 * 109.47344 * 180.62428 * 1 2 3 25 25 H 1.09005 * 109.46953 * 53.96000 * 3 2 1 26 26 H 1.09002 * 109.47684 * 173.95410 * 3 2 1 27 27 H 1.08994 * 109.46897 * 299.99537 * 4 3 2 28 28 H 1.09004 * 109.47135 * 59.99682 * 4 3 2 29 29 H 1.08994 * 109.47184 * 299.99738 * 5 4 3 30 30 H 1.08997 * 109.46834 * 59.99718 * 5 4 3 31 31 H 0.96992 * 120.00555 * 179.97438 * 9 8 6 32 32 H 1.09008 * 109.47118 * 317.97476 * 14 2 1 33 33 H 1.08994 * 109.47609 * 197.97406 * 14 2 1 34 34 H 1.09001 * 110.67114 * 278.33243 * 16 15 14 35 35 H 1.08998 * 110.66742 * 41.29845 * 16 15 14 36 36 H 1.08998 * 110.27892 * 119.69541 * 17 16 15 37 37 H 1.08998 * 110.27999 * 241.79100 * 17 16 15 38 38 H 1.08998 * 110.28515 * 169.77036 * 19 18 17 39 39 H 1.09005 * 110.36169 * 47.71955 * 19 18 17 40 40 H 1.09001 * 110.67353 * 240.90951 * 20 19 18 41 41 H 1.09002 * 110.81631 * 117.83961 * 20 19 18 42 42 H 1.08999 * 111.91448 * 297.90046 * 21 18 17 43 43 H 1.09002 * 111.90974 * 171.68994 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1794 3.4861 -1.3178 6 6 1.8214 4.1616 -2.6165 7 1 1.2589 3.6258 -3.3668 8 6 2.2109 5.4641 -2.8463 9 7 2.8954 6.1167 -1.9324 10 14 1.7666 6.3018 -4.4557 11 1 1.0002 5.3588 -5.3094 12 1 0.9386 7.5025 -4.1768 13 1 3.0083 6.7097 -5.1607 14 6 1.9954 -0.7661 1.1374 15 6 1.8977 -2.2625 0.8336 16 6 2.5572 -2.7534 -0.4949 17 6 2.7544 -4.2689 -0.2575 18 7 2.2020 -4.5244 1.1125 19 6 0.7180 -4.3888 0.9909 20 6 0.4618 -2.8771 0.7889 21 6 2.5738 -3.2614 1.8409 22 1 -0.3633 0.5236 0.8844 23 1 -0.3634 0.5041 -0.8955 24 1 -0.3634 -1.0276 0.0112 25 1 1.5613 1.9272 0.8310 26 1 3.0798 1.3443 0.1082 27 1 2.0658 1.5016 -2.1491 28 1 0.5472 2.0846 -1.4264 29 1 1.7448 4.0417 -0.4870 30 1 3.2636 3.4593 -1.2094 31 1 3.1698 7.0329 -2.0942 32 1 1.4129 -0.5378 2.0301 33 1 3.0382 -0.4969 1.3054 34 1 1.8928 -2.5798 -1.3414 35 1 3.5165 -2.2606 -0.6532 36 1 2.2023 -4.8428 -1.0017 37 1 3.8139 -4.5222 -0.2936 38 1 0.2308 -4.7362 1.9020 39 1 0.3549 -4.9517 0.1309 40 1 -0.1522 -2.4795 1.5970 41 1 -0.0071 -2.6893 -0.1769 42 1 3.6538 -3.1221 1.8886 43 1 2.1177 -3.2128 2.8297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715534078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:01 Heat of formation + Delta-G solvation = 15.775947 kcal Electronic energy + Delta-G solvation = -19068.317515 eV Core-core repulsion = 16341.387307 eV Total energy + Delta-G solvation = -2726.930208 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.94486 -37.36493 -33.75726 -31.87105 -30.80336 -30.29201 -28.57409 -27.05346 -26.40639 -23.78870 -22.49979 -21.39494 -21.04904 -19.85281 -18.66072 -16.33094 -16.23685 -15.68536 -15.48294 -15.01251 -14.92501 -14.33846 -13.75205 -13.44613 -13.18490 -12.86897 -12.51889 -12.27639 -12.18814 -11.84460 -11.74282 -11.61390 -11.52874 -11.22698 -10.98333 -10.94662 -10.79407 -10.54901 -10.52767 -10.35187 -10.17384 -9.60096 -9.32806 -9.11908 -9.00802 -8.33340 -8.05189 -5.98497 -4.00385 3.31849 3.39222 3.43733 3.76263 4.03742 4.32087 4.47335 4.53355 4.88710 4.96997 4.99741 5.05458 5.08344 5.35729 5.37404 5.43313 5.47484 5.52980 5.58161 5.63819 5.65943 5.71065 5.74366 5.80004 5.87803 5.93285 5.99618 6.08931 6.15972 6.19377 6.34125 6.40800 6.51220 6.72059 6.79327 7.13848 7.37093 7.41447 7.70443 7.85410 8.02264 8.45809 9.07131 9.63612 11.13030 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.045944 B = 0.003579 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.289420 B = 7821.608663 C = 7863.845161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.537 5.537 3 C 0.056 3.944 4 C -0.104 4.104 5 C 0.021 3.979 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.089 3.911 15 C -0.088 4.088 16 C -0.127 4.127 17 C 0.008 3.992 18 N -0.471 5.471 19 C 0.011 3.989 20 C -0.144 4.144 21 C 0.016 3.984 22 H 0.020 0.980 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.013 0.987 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 -19.576 7.302 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.260 5.260 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.017 4.017 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.040 4.040 15 C -0.091 4.091 16 C -0.165 4.165 17 C -0.121 4.121 18 N -0.191 5.191 19 C -0.118 4.118 20 C -0.183 4.183 21 C -0.114 4.114 22 H 0.038 0.962 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.568 -20.332 7.195 21.720 hybrid contribution -0.822 1.827 -0.539 2.075 sum -3.389 -18.505 6.656 19.956 Atomic orbital electron populations 1.22671 0.88023 1.01799 1.00997 1.61949 1.07619 1.14871 1.41607 1.22336 0.99392 0.86239 0.99111 1.21635 0.99998 0.98110 0.94408 1.19080 0.96224 0.89394 0.96954 1.21292 1.34628 0.97557 1.02051 0.92660 1.25033 0.95263 0.97525 0.96729 1.69974 1.38506 1.11221 1.33938 0.86549 0.78178 0.79465 0.83901 1.19730 1.21061 1.21016 1.21499 1.00285 0.90341 0.91873 1.23637 0.95114 0.94491 0.95826 1.23027 1.01544 0.94588 0.97386 1.23712 1.01088 0.95869 0.91386 1.70046 1.06130 1.32703 1.10193 1.23586 0.90422 0.95659 1.02098 1.23391 0.97031 0.95591 1.02261 1.24513 1.00878 0.88390 0.97601 0.96177 0.90937 0.91178 0.95453 0.91347 0.92689 0.93519 0.96877 0.96641 0.93111 0.94501 0.90610 0.90769 0.91180 0.90936 0.90238 0.90373 0.90849 0.91663 0.90503 0.89646 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.05 60.06 0.54 0.72 16 2 N -0.54 -7.79 4.43 -242.92 -1.08 -8.86 16 3 C 0.06 0.98 4.93 -3.83 -0.02 0.96 16 4 C -0.10 -2.17 5.08 -26.73 -0.14 -2.30 16 5 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 6 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 7 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.09 1.07 5.10 -3.82 -0.02 1.05 16 15 C -0.09 -0.93 1.25 -148.77 -0.19 -1.12 16 16 C -0.13 -1.38 5.77 -24.12 -0.14 -1.52 16 17 C 0.01 0.08 6.64 -1.26 -0.01 0.07 16 18 N -0.47 -4.86 6.94 -221.71 -1.54 -6.40 16 19 C 0.01 0.10 6.61 -1.49 -0.01 0.09 16 20 C -0.14 -1.39 4.19 -24.12 -0.10 -1.49 16 21 C 0.02 0.15 6.52 0.43 0.00 0.16 16 22 H 0.02 0.27 8.14 -51.92 -0.42 -0.16 16 23 H 0.07 1.06 6.50 -51.93 -0.34 0.72 16 24 H 0.07 0.81 4.32 -51.93 -0.22 0.59 16 25 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 26 H 0.07 1.18 7.81 -51.93 -0.41 0.78 16 27 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 0.97 6.57 -51.93 -0.34 0.62 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.04 0.43 7.97 -51.92 -0.41 0.02 16 33 H 0.08 0.91 7.69 -51.93 -0.40 0.51 16 34 H 0.07 0.88 7.82 -51.93 -0.41 0.48 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.67 7.71 -51.93 -0.40 0.27 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.63 7.71 -51.93 -0.40 0.23 16 40 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 41 H 0.08 0.78 6.42 -51.93 -0.33 0.45 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -29.94 326.26 -10.45 -40.39 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -7.85 Total: -3.78 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -0.62 Total: -16.62 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: -1.88 Total: -41.74 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.94 -10.45 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715534078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.166 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds