Wall clock time and date at job start Mon Mar 30 2020 04:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99823 * 2 1 4 4 C 1.53001 * 109.47357 * 293.95349 * 3 2 1 5 5 C 1.50708 * 109.47027 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00032 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99837 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99875 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99989 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46780 * 90.00372 * 9 7 5 11 11 H 1.48499 * 109.47517 * 210.00500 * 9 7 5 12 12 H 1.48507 * 109.47211 * 330.00943 * 9 7 5 13 13 C 1.47892 * 110.99978 * 123.95282 * 2 1 3 14 14 H 1.08987 * 107.21976 * 295.02988 * 13 2 1 15 15 C 1.52378 * 108.54297 * 175.98348 * 13 2 1 16 16 C 1.52355 * 112.38375 * 194.15984 * 15 13 2 17 17 H 1.10067 * 108.67526 * 171.54099 * 16 15 13 18 18 C 1.52327 * 111.55636 * 291.40607 * 16 15 13 19 19 C 1.52120 * 112.72429 * 69.62952 * 18 16 15 20 20 C 1.52161 * 112.99701 * 43.82814 * 19 18 16 21 21 N 1.45778 * 112.74288 * 314.68308 * 20 19 18 22 22 C 1.46536 * 112.03705 * 57.13016 * 21 20 19 23 23 C 1.45824 * 114.05156 * 288.60105 * 21 20 19 24 24 H 1.08999 * 109.47361 * 54.43308 * 1 2 3 25 25 H 1.09003 * 109.47002 * 294.43830 * 1 2 3 26 26 H 1.08993 * 109.47386 * 174.43917 * 1 2 3 27 27 H 1.09000 * 109.47528 * 53.95858 * 3 2 1 28 28 H 1.08999 * 109.46847 * 173.95282 * 3 2 1 29 29 H 1.08997 * 109.47189 * 300.00158 * 4 3 2 30 30 H 1.09005 * 109.46975 * 60.00545 * 4 3 2 31 31 H 0.96998 * 119.99794 * 179.97438 * 8 7 5 32 32 H 1.09678 * 109.12096 * 315.44166 * 15 13 2 33 33 H 1.09643 * 109.15862 * 72.83397 * 15 13 2 34 34 H 1.09733 * 109.08593 * 191.15191 * 18 16 15 35 35 H 1.09749 * 109.06260 * 308.17450 * 18 16 15 36 36 H 1.10666 * 107.88981 * 162.93658 * 19 18 16 37 37 H 1.08746 * 110.88304 * 278.69081 * 19 18 16 38 38 H 1.09725 * 109.06298 * 193.23620 * 20 19 18 39 39 H 1.09713 * 109.11100 * 76.18225 * 20 19 18 40 40 H 1.08863 * 109.91034 * 54.48387 * 22 21 20 41 41 H 1.08862 * 109.93446 * 175.58897 * 22 21 20 42 42 H 1.09587 * 109.35764 * 308.87395 * 23 21 20 43 43 H 1.09639 * 109.26044 * 191.22972 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1710 3.4647 -1.3179 6 1 2.7190 3.8327 -0.4632 7 6 1.9658 4.2819 -2.4093 8 7 1.2988 3.8335 -3.4504 9 14 2.6339 6.0263 -2.4086 10 1 4.0063 6.0309 -2.9759 11 1 1.7545 6.8936 -3.2331 12 1 2.6722 6.5412 -1.0162 13 6 1.9990 -0.7711 1.1453 14 1 1.7034 -0.2451 2.0529 15 6 3.5181 -0.8193 1.0356 16 6 4.1335 -1.8644 1.9578 17 1 5.2049 -1.9549 1.7224 18 6 3.9858 -1.4745 3.4229 19 6 2.5458 -1.5470 3.9080 20 6 1.8227 -2.8007 3.4384 21 7 2.0483 -3.0861 2.0267 22 6 3.4733 -3.2239 1.7145 23 6 1.3774 -2.1627 1.1191 24 1 -0.3634 0.5977 -0.8359 25 1 -0.3633 0.4252 0.9356 26 1 -0.3634 -1.0227 -0.0996 27 1 1.5612 1.9274 0.8309 28 1 3.0797 1.3444 0.1083 29 1 2.0658 1.5016 -2.1492 30 1 0.5471 2.0846 -1.4265 31 1 1.1542 4.4086 -4.2180 32 1 3.7965 -1.0442 -0.0011 33 1 3.9282 0.1669 1.2834 34 1 4.6075 -2.1395 4.0355 35 1 4.3623 -0.4530 3.5617 36 1 2.5600 -1.5584 5.0145 37 1 1.9954 -0.6534 3.6232 38 1 0.7463 -2.6808 3.6144 39 1 2.1601 -3.6557 4.0376 40 1 3.9243 -3.9726 2.3635 41 1 3.5988 -3.5126 0.6724 42 1 0.3192 -2.0878 1.3940 43 1 1.4292 -2.5578 0.0977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717473697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:59 Heat of formation + Delta-G solvation = -4.128488 kcal Electronic energy + Delta-G solvation = -19843.160663 eV Core-core repulsion = 17115.367334 eV Total energy + Delta-G solvation = -2727.793329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.55773 -36.91626 -33.36272 -33.16148 -32.12981 -30.38701 -28.80250 -26.81527 -25.26352 -24.20301 -23.05914 -21.99342 -20.71616 -19.60873 -18.56663 -16.45237 -16.11200 -15.30459 -14.96649 -14.78207 -14.51031 -14.27570 -14.05310 -13.53741 -13.35432 -13.02492 -12.74315 -12.31059 -12.11546 -12.03775 -11.71477 -11.46083 -11.28378 -11.16075 -11.11504 -10.93784 -10.64989 -10.59574 -10.50535 -10.20780 -9.99641 -9.74164 -9.33896 -9.10453 -8.31608 -8.01671 -7.64875 -5.98533 -4.00827 3.32191 3.38297 3.41358 3.94488 4.37681 4.51670 4.62118 4.76388 4.82051 4.99514 5.13846 5.18750 5.25448 5.34433 5.37242 5.45287 5.54506 5.61638 5.74970 5.78779 5.80769 5.90735 5.90930 5.98575 6.01637 6.07956 6.18390 6.25736 6.32680 6.34392 6.42174 6.53365 6.58268 7.00748 7.13194 7.26647 7.54055 7.61942 7.82042 7.92689 8.10419 8.45421 9.06463 9.62651 11.12848 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035825 B = 0.004785 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.391471 B = 5850.396382 C = 6168.843821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.539 5.539 3 C 0.061 3.939 4 C 0.029 3.971 5 C -0.521 4.521 6 H 0.052 0.948 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.055 3.945 14 H 0.037 0.963 15 C -0.104 4.104 16 C -0.120 4.120 17 H 0.072 0.928 18 C -0.106 4.106 19 C -0.154 4.154 20 C 0.068 3.932 21 N -0.546 5.546 22 C 0.069 3.931 23 C 0.072 3.928 24 H 0.078 0.922 25 H 0.014 0.986 26 H 0.059 0.941 27 H 0.015 0.985 28 H 0.062 0.938 29 H 0.024 0.976 30 H 0.017 0.983 31 H 0.260 0.740 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.516 -13.891 13.157 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.264 5.264 3 C -0.066 4.066 4 C -0.009 4.009 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 C -0.055 4.055 14 H 0.055 0.945 15 C -0.142 4.142 16 C -0.140 4.140 17 H 0.090 0.910 18 C -0.143 4.143 19 C -0.194 4.194 20 C -0.060 4.060 21 N -0.267 5.267 22 C -0.059 4.059 23 C -0.056 4.056 24 H 0.097 0.903 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.385 -14.498 12.483 19.280 hybrid contribution 0.441 2.423 0.875 2.613 sum 2.826 -12.075 13.359 18.228 Atomic orbital electron populations 1.22420 0.88310 1.01139 1.00652 1.62466 1.07245 1.15768 1.40931 1.22368 0.98757 0.85296 1.00138 1.19094 0.96850 0.93954 0.90980 1.21195 1.35109 0.97871 1.01862 0.92946 1.24984 0.95293 0.98404 0.95572 1.69974 1.40803 1.36431 1.06019 0.86614 0.78879 0.84677 0.77935 1.20635 1.21202 1.19982 1.22226 0.95126 0.95361 0.92756 0.94520 1.21401 0.94196 0.98509 1.00093 1.21530 1.00488 0.97029 0.94950 0.91011 1.21245 0.96017 1.01579 0.95506 1.22000 0.96787 0.99881 1.00688 1.21711 0.99959 0.96050 0.88274 1.60275 1.12997 1.49893 1.03499 1.21964 0.86912 0.95324 1.01712 1.21901 0.97019 0.89420 0.97247 0.90290 0.96786 0.92237 0.96687 0.91954 0.95779 0.96500 0.93014 0.90750 0.92045 0.92501 0.92285 0.92588 0.91590 0.91353 0.91285 0.90940 0.90360 0.91354 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 8.82 60.07 0.53 0.93 16 2 N -0.54 -9.93 4.62 -234.82 -1.09 -11.02 16 3 C 0.06 1.33 4.70 -3.82 -0.02 1.31 16 4 C 0.03 0.76 4.91 -27.88 -0.14 0.62 16 5 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 6 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 0.83 1.53 -67.77 -0.10 0.73 16 14 H 0.04 0.59 5.59 -51.94 -0.29 0.30 16 15 C -0.10 -1.50 4.01 -27.38 -0.11 -1.61 16 16 C -0.12 -1.37 2.91 -91.25 -0.27 -1.64 16 17 H 0.07 0.76 8.23 -51.32 -0.42 0.34 16 18 C -0.11 -1.13 5.37 -27.52 -0.15 -1.28 16 19 C -0.15 -1.64 5.09 -27.61 -0.14 -1.78 16 20 C 0.07 0.71 5.75 -4.86 -0.03 0.68 16 21 N -0.55 -6.44 4.78 -236.53 -1.13 -7.57 16 22 C 0.07 0.75 5.70 -3.98 -0.02 0.73 16 23 C 0.07 0.96 4.16 -4.70 -0.02 0.94 16 24 H 0.08 1.52 6.24 -51.93 -0.32 1.19 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.87 6.50 -51.93 -0.34 0.53 16 27 H 0.01 0.33 8.12 -51.93 -0.42 -0.09 16 28 H 0.06 1.34 6.05 -51.93 -0.31 1.02 16 29 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.02 0.47 6.44 -51.93 -0.33 0.13 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.07 1.17 8.19 -51.54 -0.42 0.75 16 33 H 0.06 0.96 6.88 -51.56 -0.35 0.60 16 34 H 0.06 0.53 8.20 -51.51 -0.42 0.11 16 35 H 0.06 0.66 8.20 -51.50 -0.42 0.24 16 36 H 0.06 0.52 8.28 -50.97 -0.42 0.10 16 37 H 0.07 0.81 5.77 -52.07 -0.30 0.51 16 38 H 0.07 0.69 8.11 -51.52 -0.42 0.27 16 39 H 0.07 0.64 8.20 -51.52 -0.42 0.22 16 40 H 0.07 0.69 8.13 -52.01 -0.42 0.27 16 41 H 0.08 0.87 8.13 -52.01 -0.42 0.44 16 42 H 0.07 0.89 6.91 -51.60 -0.36 0.53 16 43 H 0.08 1.18 8.19 -51.57 -0.42 0.76 16 LS Contribution 313.77 15.07 4.73 4.73 Total: -1.00 -29.81 313.77 -10.29 -40.10 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -7.64 Total: -2.65 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -0.87 Total: -14.05 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: -1.48 Total: -44.96 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.81 -10.29 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717473697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.971 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds