Wall clock time and date at job start Mon Mar 30 2020 04:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99823 * 2 1 4 4 C 1.53001 * 109.47357 * 293.95349 * 3 2 1 5 5 C 1.50708 * 109.47027 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00032 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99837 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99875 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99989 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46780 * 90.00372 * 9 7 5 11 11 H 1.48499 * 109.47517 * 210.00500 * 9 7 5 12 12 H 1.48507 * 109.47211 * 330.00943 * 9 7 5 13 13 C 1.47892 * 110.99978 * 123.95282 * 2 1 3 14 14 H 1.08987 * 107.21976 * 295.02988 * 13 2 1 15 15 C 1.52378 * 108.54297 * 175.98348 * 13 2 1 16 16 C 1.52355 * 112.38375 * 194.15984 * 15 13 2 17 17 H 1.10067 * 108.67526 * 171.54099 * 16 15 13 18 18 C 1.52327 * 111.55636 * 291.40607 * 16 15 13 19 19 C 1.52120 * 112.72429 * 69.62952 * 18 16 15 20 20 C 1.52161 * 112.99701 * 43.82814 * 19 18 16 21 21 N 1.45778 * 112.74288 * 314.68308 * 20 19 18 22 22 C 1.46536 * 112.03705 * 57.13016 * 21 20 19 23 23 C 1.45824 * 114.05156 * 288.60105 * 21 20 19 24 24 H 1.08999 * 109.47361 * 54.43308 * 1 2 3 25 25 H 1.09003 * 109.47002 * 294.43830 * 1 2 3 26 26 H 1.08993 * 109.47386 * 174.43917 * 1 2 3 27 27 H 1.09000 * 109.47528 * 53.95858 * 3 2 1 28 28 H 1.08999 * 109.46847 * 173.95282 * 3 2 1 29 29 H 1.08997 * 109.47189 * 300.00158 * 4 3 2 30 30 H 1.09005 * 109.46975 * 60.00545 * 4 3 2 31 31 H 0.96998 * 119.99794 * 179.97438 * 8 7 5 32 32 H 1.09678 * 109.12096 * 315.44166 * 15 13 2 33 33 H 1.09643 * 109.15862 * 72.83397 * 15 13 2 34 34 H 1.09733 * 109.08593 * 191.15191 * 18 16 15 35 35 H 1.09749 * 109.06260 * 308.17450 * 18 16 15 36 36 H 1.10666 * 107.88981 * 162.93658 * 19 18 16 37 37 H 1.08746 * 110.88304 * 278.69081 * 19 18 16 38 38 H 1.09725 * 109.06298 * 193.23620 * 20 19 18 39 39 H 1.09713 * 109.11100 * 76.18225 * 20 19 18 40 40 H 1.08863 * 109.91034 * 54.48387 * 22 21 20 41 41 H 1.08862 * 109.93446 * 175.58897 * 22 21 20 42 42 H 1.09587 * 109.35764 * 308.87395 * 23 21 20 43 43 H 1.09639 * 109.26044 * 191.22972 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1710 3.4647 -1.3179 6 1 2.7190 3.8327 -0.4632 7 6 1.9658 4.2819 -2.4093 8 7 1.2988 3.8335 -3.4504 9 14 2.6339 6.0263 -2.4086 10 1 4.0063 6.0309 -2.9759 11 1 1.7545 6.8936 -3.2331 12 1 2.6722 6.5412 -1.0162 13 6 1.9990 -0.7711 1.1453 14 1 1.7034 -0.2451 2.0529 15 6 3.5181 -0.8193 1.0356 16 6 4.1335 -1.8644 1.9578 17 1 5.2049 -1.9549 1.7224 18 6 3.9858 -1.4745 3.4229 19 6 2.5458 -1.5470 3.9080 20 6 1.8227 -2.8007 3.4384 21 7 2.0483 -3.0861 2.0267 22 6 3.4733 -3.2239 1.7145 23 6 1.3774 -2.1627 1.1191 24 1 -0.3634 0.5977 -0.8359 25 1 -0.3633 0.4252 0.9356 26 1 -0.3634 -1.0227 -0.0996 27 1 1.5612 1.9274 0.8309 28 1 3.0797 1.3444 0.1083 29 1 2.0658 1.5016 -2.1492 30 1 0.5471 2.0846 -1.4265 31 1 1.1542 4.4086 -4.2180 32 1 3.7965 -1.0442 -0.0011 33 1 3.9282 0.1669 1.2834 34 1 4.6075 -2.1395 4.0355 35 1 4.3623 -0.4530 3.5617 36 1 2.5600 -1.5584 5.0145 37 1 1.9954 -0.6534 3.6232 38 1 0.7463 -2.6808 3.6144 39 1 2.1601 -3.6557 4.0376 40 1 3.9243 -3.9726 2.3635 41 1 3.5988 -3.5126 0.6724 42 1 0.3192 -2.0878 1.3940 43 1 1.4292 -2.5578 0.0977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717473697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:58 Heat of formation + Delta-G solvation = -23.841136 kcal Electronic energy + Delta-G solvation = -19844.015467 eV Core-core repulsion = 17115.367334 eV Total energy + Delta-G solvation = -2728.648133 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.58606 -38.36279 -35.27270 -34.27023 -33.28274 -31.97037 -30.23941 -28.20486 -26.64636 -25.71481 -24.31487 -22.97648 -22.25238 -21.12214 -19.55745 -18.59285 -17.16005 -16.66716 -16.46971 -16.04033 -15.92437 -15.50946 -15.30575 -14.79671 -14.58456 -14.38578 -14.11206 -13.86354 -13.50315 -13.21063 -13.13094 -12.86839 -12.74506 -12.67204 -12.45725 -12.27850 -12.17073 -11.97634 -11.68699 -11.50331 -11.36521 -11.27420 -11.09159 -10.96168 -10.55243 -9.16889 -8.97829 -8.21905 -6.33664 1.37940 1.39714 1.50595 2.38109 2.87588 3.11118 3.22061 3.67531 3.81886 3.83772 3.99188 4.15278 4.19186 4.26023 4.29720 4.42708 4.46778 4.48040 4.53546 4.60200 4.66823 4.72404 4.87092 4.92861 4.97216 4.99383 5.00617 5.09322 5.11112 5.16132 5.19325 5.26603 5.31786 5.42092 5.44366 5.63975 5.76440 6.07820 6.12420 6.30605 6.34872 6.39575 6.82987 7.35384 8.90192 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035825 B = 0.004785 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.391471 B = 5850.396382 C = 6168.843821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.551 5.551 3 C 0.081 3.919 4 C 0.038 3.962 5 C -0.546 4.546 6 H 0.056 0.944 7 C 0.003 3.997 8 N -0.930 5.930 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.265 1.265 13 C 0.061 3.939 14 H 0.033 0.967 15 C -0.102 4.102 16 C -0.115 4.115 17 H 0.083 0.917 18 C -0.105 4.105 19 C -0.154 4.154 20 C 0.066 3.934 21 N -0.546 5.546 22 C 0.069 3.931 23 C 0.081 3.919 24 H 0.050 0.950 25 H 0.021 0.979 26 H 0.087 0.913 27 H 0.010 0.990 28 H 0.062 0.938 29 H -0.009 1.009 30 H -0.005 1.005 31 H 0.264 0.736 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.298 -14.622 14.982 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.276 5.276 3 C -0.047 4.047 4 C 0.001 3.999 5 C -0.585 4.585 6 H 0.074 0.926 7 C -0.195 4.195 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.189 1.189 13 C -0.048 4.048 14 H 0.051 0.949 15 C -0.140 4.140 16 C -0.136 4.136 17 H 0.101 0.899 18 C -0.143 4.143 19 C -0.193 4.193 20 C -0.062 4.062 21 N -0.267 5.267 22 C -0.058 4.058 23 C -0.048 4.048 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.106 0.894 27 H 0.028 0.972 28 H 0.080 0.920 29 H 0.010 0.990 30 H 0.014 0.986 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.169 -15.249 14.328 21.163 hybrid contribution 0.184 2.595 0.307 2.619 sum 3.353 -12.655 14.635 19.636 Atomic orbital electron populations 1.22386 0.87521 1.02407 0.99777 1.62399 1.08116 1.13908 1.43189 1.21957 0.98723 0.86907 0.97066 1.18913 0.95037 0.93618 0.92379 1.21600 1.35511 0.99052 1.02320 0.92559 1.25947 0.95325 1.03238 0.94960 1.70109 1.41843 1.38323 1.06753 0.85440 0.78381 0.78705 0.78464 1.19640 1.20497 1.18883 1.22319 0.95590 0.95935 0.90937 0.94880 1.21388 0.93840 0.98804 0.99933 1.21511 1.00900 0.96294 0.94872 0.89882 1.21247 0.96463 1.01583 0.95009 1.21972 0.96392 0.99049 1.01866 1.21808 1.00317 0.96641 0.87408 1.60314 1.13482 1.48827 1.04095 1.22037 0.86351 0.95297 1.02153 1.21771 0.97386 0.88234 0.97385 0.93077 0.96080 0.89418 0.97212 0.91993 0.99016 0.98643 0.92687 0.92565 0.93816 0.90261 0.93275 0.90796 0.93777 0.91059 0.89217 0.88577 0.90797 0.90805 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 8.82 127.69 1.13 2.07 16 2 N -0.55 -20.78 4.62 -896.85 -4.15 -24.92 16 3 C 0.08 3.64 4.70 86.30 0.41 4.04 16 4 C 0.04 2.10 4.91 29.85 0.15 2.25 16 5 C -0.55 -32.13 9.11 25.60 0.23 -31.90 16 6 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 7 C 0.00 0.20 5.46 84.65 0.46 0.66 16 8 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 9 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 13 C 0.06 1.85 1.53 44.33 0.07 1.91 16 14 H 0.03 1.05 5.59 -2.39 -0.01 1.04 16 15 C -0.10 -2.93 4.01 30.17 0.12 -2.81 16 16 C -0.12 -2.44 2.91 -11.20 -0.03 -2.47 16 17 H 0.08 1.59 8.23 -1.82 -0.01 1.58 16 18 C -0.11 -2.00 5.37 30.08 0.16 -1.84 16 19 C -0.15 -2.89 5.09 30.03 0.15 -2.74 16 20 C 0.07 1.18 5.75 86.24 0.50 1.67 16 21 N -0.55 -11.58 4.78 -902.25 -4.31 -15.90 16 22 C 0.07 1.33 5.70 86.40 0.49 1.83 16 23 C 0.08 2.06 4.16 86.32 0.36 2.42 16 24 H 0.05 2.05 6.24 -2.39 -0.01 2.03 16 25 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.09 2.52 6.50 -2.39 -0.02 2.50 16 27 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 28 H 0.06 2.75 6.05 -2.39 -0.01 2.74 16 29 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.00 -0.28 6.44 -2.38 -0.02 -0.29 16 31 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 32 H 0.06 1.80 8.19 -2.03 -0.02 1.79 16 33 H 0.04 1.39 6.88 -2.04 -0.01 1.37 16 34 H 0.08 1.19 8.20 -2.00 -0.02 1.17 16 35 H 0.05 1.03 8.20 -1.99 -0.02 1.01 16 36 H 0.07 1.14 8.28 -1.49 -0.01 1.13 16 37 H 0.04 1.02 5.77 -2.52 -0.01 1.01 16 38 H 0.07 1.24 8.11 -2.00 -0.02 1.23 16 39 H 0.09 1.29 8.20 -2.01 -0.02 1.27 16 40 H 0.10 1.45 8.13 -2.46 -0.02 1.43 16 41 H 0.07 1.50 8.13 -2.46 -0.02 1.48 16 42 H 0.07 1.79 6.91 -2.07 -0.01 1.78 16 43 H 0.07 2.01 8.19 -2.05 -0.02 1.99 16 Total: -1.00 -65.16 313.77 -0.97 -66.13 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.99 Total: 10.03 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 4.19 Total: -24.90 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -8.18 Total: -98.28 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -65.16 -0.97 -66.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717473697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.286 kcal (2) G-P(sol) polarization free energy of solvation -65.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds