Wall clock time and date at job start Mon Mar 30 2020 04:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 110.99813 * 2 1 4 4 C 1.52996 * 109.47256 * 293.94971 * 3 2 1 5 5 C 1.50702 * 109.47159 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 3 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 C 1.47091 * 110.99618 * 123.95228 * 2 1 3 14 14 H 1.09010 * 109.02441 * 295.98178 * 13 2 1 15 15 C 1.53010 * 109.30057 * 55.84437 * 13 2 1 16 16 C 1.52994 * 109.54990 * 176.96225 * 15 13 2 17 17 H 1.08979 * 109.77148 * 119.50912 * 16 15 13 18 18 C 1.53131 * 109.51257 * 239.99371 * 16 15 13 19 19 C 1.52977 * 109.53923 * 61.61311 * 18 16 15 20 20 C 1.52880 * 109.93628 * 55.84862 * 19 18 16 21 21 N 1.46748 * 110.18563 * 303.24118 * 20 19 18 22 22 C 1.46714 * 111.18153 * 60.90515 * 21 20 19 23 23 C 1.46541 * 111.61122 * 295.16863 * 21 20 19 24 24 H 1.09003 * 109.47125 * 59.99862 * 1 2 3 25 25 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47558 * 300.00476 * 1 2 3 27 27 H 1.09004 * 109.46774 * 173.95170 * 3 2 1 28 28 H 1.09000 * 109.47723 * 53.95558 * 3 2 1 29 29 H 1.09004 * 109.47066 * 60.00378 * 4 3 2 30 30 H 1.08994 * 109.47405 * 300.00209 * 4 3 2 31 31 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 32 32 H 1.09183 * 109.35999 * 296.86174 * 15 13 2 33 33 H 1.08983 * 109.62843 * 56.40436 * 15 13 2 34 34 H 1.09044 * 109.51054 * 301.40450 * 18 16 15 35 35 H 1.09109 * 109.40465 * 181.62702 * 18 16 15 36 36 H 1.08924 * 109.83283 * 294.93671 * 19 18 16 37 37 H 1.09307 * 109.18312 * 175.61170 * 19 18 16 38 38 H 1.09115 * 109.40773 * 182.93569 * 20 19 18 39 39 H 1.09127 * 109.38760 * 63.50146 * 20 19 18 40 40 H 1.09208 * 109.31622 * 56.37094 * 22 21 20 41 41 H 1.08753 * 110.12309 * 176.38309 * 22 21 20 42 42 H 1.09076 * 109.71790 * 359.93846 * 23 21 20 43 43 H 1.09287 * 109.28898 * 240.73388 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1720 3.4641 -1.3185 6 1 2.7207 3.8320 -0.4640 7 6 1.9716 4.2795 -2.4122 8 7 2.4480 5.5053 -2.4146 9 14 1.0232 3.6431 -3.8903 10 1 -0.4215 3.9395 -3.7165 11 1 1.5204 4.3085 -5.1213 12 1 1.2168 2.1755 -4.0082 13 6 1.9960 -0.7670 1.1391 14 1 1.7018 -0.2741 2.0659 15 6 1.4203 -2.1842 1.1043 16 6 2.0230 -3.0097 2.2427 17 1 1.2314 -3.3516 2.9093 18 6 2.7657 -4.2163 1.6620 19 6 3.9095 -3.7319 0.7692 20 6 4.8301 -2.8022 1.5600 21 7 4.0638 -1.6774 2.1088 22 6 3.0172 -2.1456 3.0242 23 6 3.5210 -0.8252 1.0474 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.0797 1.3444 0.1083 28 1 1.5611 1.9274 0.8309 29 1 0.5472 2.0844 -1.4265 30 1 2.0658 1.5015 -2.1491 31 1 2.3067 6.0790 -3.1838 32 1 0.3361 -2.1375 1.2246 33 1 1.6526 -2.6503 0.1470 34 1 2.0744 -4.8212 1.0744 35 1 3.1701 -4.8194 2.4763 36 1 3.5063 -3.2045 -0.0944 37 1 4.4833 -4.5945 0.4207 38 1 5.6124 -2.4207 0.9018 39 1 5.2916 -3.3587 2.3774 40 1 3.4713 -2.7462 3.8152 41 1 2.5025 -1.2972 3.4693 42 1 3.8117 -1.2204 0.0733 43 1 3.9258 0.1845 1.1527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717473698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:02 Heat of formation + Delta-G solvation = 3.707775 kcal Electronic energy + Delta-G solvation = -19840.531718 eV Core-core repulsion = 17113.078195 eV Total energy + Delta-G solvation = -2727.453523 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78543 -37.15112 -33.40033 -33.23451 -32.21807 -30.33891 -29.02023 -26.91775 -25.38762 -24.31640 -22.95739 -22.04635 -20.66176 -19.74083 -17.97432 -16.88077 -16.68465 -15.75821 -15.22511 -14.90999 -14.30828 -14.18454 -13.77120 -13.63851 -13.51859 -13.02402 -12.76240 -12.54495 -12.45894 -12.09145 -11.72584 -11.45907 -11.39952 -11.33798 -11.20084 -11.00266 -10.97338 -10.67203 -10.48000 -10.06904 -9.85790 -9.80415 -9.63360 -9.17247 -8.50327 -8.03396 -7.82892 -6.01961 -3.99766 3.33124 3.40687 3.46785 3.90392 4.34408 4.48320 4.56837 4.67516 4.77119 4.94180 5.03567 5.12797 5.18688 5.31861 5.32820 5.40883 5.49362 5.52622 5.63201 5.69448 5.76540 5.77929 5.83855 5.90095 5.91719 6.03294 6.10294 6.11209 6.17749 6.26798 6.28877 6.37427 6.45375 6.81867 7.06654 7.13894 7.25629 7.33483 7.62043 7.66223 7.87760 8.56042 9.02612 9.60740 11.11509 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035173 B = 0.004968 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.882129 B = 5635.225407 C = 5836.543108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.541 5.541 3 C 0.067 3.933 4 C -0.006 4.006 5 C -0.520 4.520 6 H 0.071 0.929 7 C 0.068 3.932 8 N -0.904 5.904 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.070 3.930 14 H 0.041 0.959 15 C -0.112 4.112 16 C -0.123 4.123 17 H 0.072 0.928 18 C -0.109 4.109 19 C -0.159 4.159 20 C 0.057 3.943 21 N -0.534 5.534 22 C 0.059 3.941 23 C 0.060 3.940 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.020 0.980 27 H 0.071 0.929 28 H 0.025 0.975 29 H 0.010 0.990 30 H 0.024 0.976 31 H 0.263 0.737 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 -20.014 9.068 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.060 4.060 4 C -0.044 4.044 5 C -0.559 4.559 6 H 0.089 0.911 7 C -0.133 4.133 8 N -0.543 5.543 9 Si 0.707 3.293 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.188 1.188 13 C -0.040 4.040 14 H 0.059 0.941 15 C -0.149 4.149 16 C -0.144 4.144 17 H 0.091 0.909 18 C -0.147 4.147 19 C -0.198 4.198 20 C -0.071 4.071 21 N -0.256 5.256 22 C -0.069 4.069 23 C -0.067 4.067 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.028 0.972 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.231 -19.775 8.795 21.644 hybrid contribution -1.434 -0.245 -0.595 1.571 sum -1.202 -20.019 8.200 21.667 Atomic orbital electron populations 1.22417 0.88246 1.00782 1.01069 1.62185 1.07381 1.15913 1.41059 1.22220 0.99471 0.84919 0.99354 1.19563 0.96119 0.95698 0.93035 1.21096 1.35521 0.95611 1.03640 0.91125 1.24989 0.95343 0.94667 0.98327 1.69916 1.46295 1.07316 1.30810 0.86781 0.80288 0.79819 0.82458 1.20421 1.21439 1.18773 1.21867 0.95340 0.93925 0.92853 0.94137 1.21767 0.99741 0.94681 0.98744 1.21805 0.98443 0.96371 0.97772 0.90925 1.21561 0.97267 0.96790 0.99036 1.22168 0.97819 1.00243 0.99581 1.22162 0.95719 0.91003 0.98227 1.61907 1.25367 1.19612 1.18759 1.22067 0.91762 0.98257 0.94809 1.22190 0.92531 0.98149 0.93862 0.90839 0.92159 0.96173 0.91023 0.95664 0.97151 0.95818 0.92766 0.91930 0.90825 0.92132 0.92201 0.91099 0.91846 0.90710 0.91071 0.91090 0.90461 0.91434 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.94 60.06 0.54 0.90 16 2 N -0.54 -9.35 4.63 -234.80 -1.09 -10.44 16 3 C 0.07 1.38 4.71 -3.83 -0.02 1.36 16 4 C -0.01 -0.16 3.96 -27.88 -0.11 -0.27 16 5 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 6 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 9 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.41 6.54 56.52 0.37 -6.05 16 13 C 0.07 1.01 1.67 -67.66 -0.11 0.89 16 14 H 0.04 0.62 6.94 -51.92 -0.36 0.26 16 15 C -0.11 -1.35 4.30 -26.73 -0.12 -1.46 16 16 C -0.12 -1.25 3.26 -90.47 -0.30 -1.54 16 17 H 0.07 0.66 8.14 -51.94 -0.42 0.24 16 18 C -0.11 -1.00 5.31 -26.68 -0.14 -1.14 16 19 C -0.16 -1.57 5.44 -26.80 -0.15 -1.72 16 20 C 0.06 0.60 5.59 -3.97 -0.02 0.58 16 21 N -0.53 -6.65 5.08 -235.01 -1.19 -7.84 16 22 C 0.06 0.65 5.36 -3.84 -0.02 0.63 16 23 C 0.06 0.87 4.87 -4.08 -0.02 0.85 16 24 H 0.07 1.25 6.47 -51.93 -0.34 0.92 16 25 H 0.06 0.81 6.06 -51.93 -0.31 0.50 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 1.48 5.91 -51.93 -0.31 1.17 16 28 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 29 H 0.01 0.25 5.99 -51.93 -0.31 -0.06 16 30 H 0.02 0.59 7.19 -51.93 -0.37 0.22 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.06 0.73 6.44 -51.83 -0.33 0.40 16 33 H 0.07 0.95 6.38 -51.94 -0.33 0.62 16 34 H 0.06 0.54 8.15 -51.90 -0.42 0.12 16 35 H 0.06 0.50 8.15 -51.87 -0.42 0.07 16 36 H 0.07 0.82 5.54 -51.97 -0.29 0.53 16 37 H 0.06 0.55 8.17 -51.76 -0.42 0.12 16 38 H 0.07 0.80 8.15 -51.86 -0.42 0.37 16 39 H 0.07 0.67 8.15 -51.86 -0.42 0.25 16 40 H 0.07 0.68 8.16 -51.81 -0.42 0.26 16 41 H 0.08 0.89 6.84 -52.07 -0.36 0.53 16 42 H 0.07 1.01 6.56 -51.89 -0.34 0.67 16 43 H 0.08 1.27 6.43 -51.77 -0.33 0.94 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -30.27 306.80 -9.82 -40.09 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.37 Total: -2.04 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.90 Total: -14.38 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -1.51 Total: -45.71 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.27 -9.82 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717473698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.801 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds