Wall clock time and date at job start Mon Mar 30 2020 04:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 110.99813 * 2 1 4 4 C 1.52996 * 109.47256 * 293.94971 * 3 2 1 5 5 C 1.50702 * 109.47159 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 3 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 C 1.47091 * 110.99618 * 123.95228 * 2 1 3 14 14 H 1.09010 * 109.02441 * 295.98178 * 13 2 1 15 15 C 1.53010 * 109.30057 * 55.84437 * 13 2 1 16 16 C 1.52994 * 109.54990 * 176.96225 * 15 13 2 17 17 H 1.08979 * 109.77148 * 119.50912 * 16 15 13 18 18 C 1.53131 * 109.51257 * 239.99371 * 16 15 13 19 19 C 1.52977 * 109.53923 * 61.61311 * 18 16 15 20 20 C 1.52880 * 109.93628 * 55.84862 * 19 18 16 21 21 N 1.46748 * 110.18563 * 303.24118 * 20 19 18 22 22 C 1.46714 * 111.18153 * 60.90515 * 21 20 19 23 23 C 1.46541 * 111.61122 * 295.16863 * 21 20 19 24 24 H 1.09003 * 109.47125 * 59.99862 * 1 2 3 25 25 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47558 * 300.00476 * 1 2 3 27 27 H 1.09004 * 109.46774 * 173.95170 * 3 2 1 28 28 H 1.09000 * 109.47723 * 53.95558 * 3 2 1 29 29 H 1.09004 * 109.47066 * 60.00378 * 4 3 2 30 30 H 1.08994 * 109.47405 * 300.00209 * 4 3 2 31 31 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 32 32 H 1.09183 * 109.35999 * 296.86174 * 15 13 2 33 33 H 1.08983 * 109.62843 * 56.40436 * 15 13 2 34 34 H 1.09044 * 109.51054 * 301.40450 * 18 16 15 35 35 H 1.09109 * 109.40465 * 181.62702 * 18 16 15 36 36 H 1.08924 * 109.83283 * 294.93671 * 19 18 16 37 37 H 1.09307 * 109.18312 * 175.61170 * 19 18 16 38 38 H 1.09115 * 109.40773 * 182.93569 * 20 19 18 39 39 H 1.09127 * 109.38760 * 63.50146 * 20 19 18 40 40 H 1.09208 * 109.31622 * 56.37094 * 22 21 20 41 41 H 1.08753 * 110.12309 * 176.38309 * 22 21 20 42 42 H 1.09076 * 109.71790 * 359.93846 * 23 21 20 43 43 H 1.09287 * 109.28898 * 240.73388 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1720 3.4641 -1.3185 6 1 2.7207 3.8320 -0.4640 7 6 1.9716 4.2795 -2.4122 8 7 2.4480 5.5053 -2.4146 9 14 1.0232 3.6431 -3.8903 10 1 -0.4215 3.9395 -3.7165 11 1 1.5204 4.3085 -5.1213 12 1 1.2168 2.1755 -4.0082 13 6 1.9960 -0.7670 1.1391 14 1 1.7018 -0.2741 2.0659 15 6 1.4203 -2.1842 1.1043 16 6 2.0230 -3.0097 2.2427 17 1 1.2314 -3.3516 2.9093 18 6 2.7657 -4.2163 1.6620 19 6 3.9095 -3.7319 0.7692 20 6 4.8301 -2.8022 1.5600 21 7 4.0638 -1.6774 2.1088 22 6 3.0172 -2.1456 3.0242 23 6 3.5210 -0.8252 1.0474 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.0797 1.3444 0.1083 28 1 1.5611 1.9274 0.8309 29 1 0.5472 2.0844 -1.4265 30 1 2.0658 1.5015 -2.1491 31 1 2.3067 6.0790 -3.1838 32 1 0.3361 -2.1375 1.2246 33 1 1.6526 -2.6503 0.1470 34 1 2.0744 -4.8212 1.0744 35 1 3.1701 -4.8194 2.4763 36 1 3.5063 -3.2045 -0.0944 37 1 4.4833 -4.5945 0.4207 38 1 5.6124 -2.4207 0.9018 39 1 5.2916 -3.3587 2.3774 40 1 3.4713 -2.7462 3.8152 41 1 2.5025 -1.2972 3.4693 42 1 3.8117 -1.2204 0.0733 43 1 3.9258 0.1845 1.1527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717473698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:01 Heat of formation + Delta-G solvation = -17.364522 kcal Electronic energy + Delta-G solvation = -19841.445481 eV Core-core repulsion = 17113.078195 eV Total energy + Delta-G solvation = -2728.367286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.76008 -38.49745 -35.26375 -34.22230 -33.57341 -31.94435 -30.22531 -28.28184 -26.51317 -25.77803 -24.16710 -23.02558 -22.08567 -21.19923 -19.01085 -18.95931 -17.65118 -17.03795 -16.37723 -16.21547 -15.87031 -15.48178 -15.12695 -14.82947 -14.78394 -14.47345 -14.05234 -13.86271 -13.69935 -13.39700 -13.07403 -12.84506 -12.80873 -12.43629 -12.21779 -12.14279 -12.05582 -11.95749 -11.78296 -11.64732 -11.55864 -11.35986 -11.13336 -10.94289 -10.75894 -9.25001 -8.99092 -8.30692 -6.34977 1.34589 1.37317 1.50444 2.35728 2.79299 3.04797 3.24085 3.67624 3.72367 3.87747 4.02219 4.10502 4.21528 4.23410 4.27210 4.41404 4.43245 4.51595 4.57535 4.62051 4.67051 4.70822 4.81766 4.88809 4.93077 4.95510 5.01138 5.05217 5.12895 5.13610 5.16283 5.26390 5.28826 5.31543 5.44568 5.50052 5.62001 6.05148 6.11082 6.25384 6.29179 6.33073 6.72527 7.29710 8.86220 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035173 B = 0.004968 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.882129 B = 5635.225407 C = 5836.543108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.546 5.546 3 C 0.081 3.919 4 C 0.002 3.998 5 C -0.534 4.534 6 H 0.030 0.970 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.951 3.049 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.249 1.249 13 C 0.073 3.927 14 H 0.034 0.966 15 C -0.104 4.104 16 C -0.118 4.118 17 H 0.091 0.909 18 C -0.105 4.105 19 C -0.156 4.156 20 C 0.056 3.944 21 N -0.546 5.546 22 C 0.057 3.943 23 C 0.068 3.932 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.021 0.979 27 H 0.063 0.937 28 H 0.013 0.987 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.267 0.733 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 -23.072 9.078 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.270 5.270 3 C -0.047 4.047 4 C -0.035 4.035 5 C -0.572 4.572 6 H 0.049 0.951 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.775 3.225 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.173 1.173 13 C -0.036 4.036 14 H 0.052 0.948 15 C -0.142 4.142 16 C -0.138 4.138 17 H 0.110 0.890 18 C -0.143 4.143 19 C -0.195 4.195 20 C -0.072 4.072 21 N -0.268 5.268 22 C -0.071 4.071 23 C -0.060 4.060 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.040 0.960 27 H 0.081 0.919 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.991 -22.858 8.826 24.522 hybrid contribution -0.970 0.739 -0.499 1.318 sum -1.961 -22.118 8.326 23.715 Atomic orbital electron populations 1.22474 0.87033 1.02542 1.00509 1.62125 1.08532 1.13614 1.42776 1.21875 0.99102 0.86791 0.96917 1.19418 0.96082 0.93219 0.94818 1.21411 1.35242 0.98022 1.02541 0.95148 1.25968 0.96407 0.94717 1.01822 1.70065 1.47972 1.08913 1.32152 0.85639 0.79063 0.79836 0.78003 1.18994 1.20792 1.17263 1.21913 0.95320 0.95072 0.91297 0.94788 1.21726 1.00180 0.92841 0.99473 1.21787 0.98732 0.96198 0.97092 0.89034 1.21555 0.96901 0.96410 0.99403 1.22118 0.98132 1.00305 0.98896 1.22222 0.95524 0.90617 0.98850 1.61851 1.26019 1.20680 1.18296 1.22143 0.91699 0.98354 0.94931 1.21978 0.92571 0.97245 0.94187 0.92095 0.89229 0.96004 0.91870 0.96871 0.96351 0.96168 0.92410 0.91063 0.91398 0.91423 0.90516 0.93144 0.90303 0.91490 0.89301 0.89194 0.91456 0.92392 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 8.94 127.69 1.14 1.81 16 2 N -0.55 -18.60 4.63 -896.76 -4.15 -22.76 16 3 C 0.08 3.40 4.71 86.30 0.41 3.81 16 4 C 0.00 0.12 3.96 29.85 0.12 0.23 16 5 C -0.53 -31.84 9.66 25.60 0.25 -31.59 16 6 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 7 C 0.01 0.47 5.47 84.66 0.46 0.93 16 8 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 9 Si 0.95 45.42 27.47 68.60 1.88 47.31 16 10 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 13 C 0.07 2.06 1.67 44.84 0.07 2.14 16 14 H 0.03 1.02 6.94 -2.38 -0.02 1.00 16 15 C -0.10 -2.27 4.30 30.60 0.13 -2.14 16 16 C -0.12 -2.01 3.26 -10.70 -0.03 -2.05 16 17 H 0.09 1.29 8.14 -2.40 -0.02 1.27 16 18 C -0.11 -1.56 5.31 30.63 0.16 -1.40 16 19 C -0.16 -2.71 5.44 30.55 0.17 -2.54 16 20 C 0.06 1.08 5.59 86.29 0.48 1.56 16 21 N -0.55 -13.09 5.08 -897.43 -4.56 -17.65 16 22 C 0.06 1.11 5.36 86.39 0.46 1.57 16 23 C 0.07 1.99 4.87 86.33 0.42 2.41 16 24 H 0.06 1.98 6.47 -2.39 -0.02 1.96 16 25 H 0.09 2.15 6.06 -2.39 -0.01 2.14 16 26 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 2.74 5.91 -2.38 -0.01 2.73 16 28 H 0.01 0.57 8.12 -2.39 -0.02 0.55 16 29 H 0.02 0.87 5.99 -2.38 -0.01 0.86 16 30 H 0.02 1.00 7.19 -2.39 -0.02 0.98 16 31 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 32 H 0.07 1.43 6.44 -2.29 -0.01 1.42 16 33 H 0.07 1.59 6.38 -2.40 -0.02 1.58 16 34 H 0.07 0.95 8.15 -2.36 -0.02 0.93 16 35 H 0.08 0.93 8.15 -2.33 -0.02 0.91 16 36 H 0.05 1.10 5.54 -2.43 -0.01 1.08 16 37 H 0.08 1.14 8.17 -2.22 -0.02 1.12 16 38 H 0.07 1.38 8.15 -2.33 -0.02 1.37 16 39 H 0.09 1.43 8.15 -2.32 -0.02 1.41 16 40 H 0.09 1.45 8.16 -2.28 -0.02 1.43 16 41 H 0.07 1.45 6.84 -2.52 -0.02 1.43 16 42 H 0.06 1.77 6.56 -2.35 -0.02 1.76 16 43 H 0.05 1.71 6.43 -2.23 -0.01 1.70 16 Total: -1.00 -66.51 306.80 -1.37 -67.88 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.92 Total: 10.96 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 4.24 Total: -25.25 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -8.41 Total: -100.89 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Total: -66.51 -1.37 -67.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717473698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.511 kcal (2) G-P(sol) polarization free energy of solvation -66.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds