Wall clock time and date at job start Mon Mar 30 2020 04:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47621 * 111.00120 * 2 1 4 4 C 1.52596 * 111.73500 * 178.16083 * 3 2 1 5 5 C 1.53887 * 111.19706 * 53.66285 * 4 3 2 6 6 C 1.51621 * 106.97130 * 304.98022 * 5 4 3 7 7 H 1.09000 * 109.55212 * 303.58911 * 6 5 4 8 8 C 1.45624 * 110.99686 * 238.96956 * 2 1 3 9 9 H 1.08997 * 110.77948 * 67.21038 * 8 2 1 10 10 C 1.53551 * 115.90533 * 299.78744 * 8 2 1 11 11 C 1.55330 * 101.89774 * 206.02733 * 10 8 2 12 12 N 1.45883 * 117.37710 * 178.75774 * 6 5 4 13 13 C 1.46905 * 110.99659 * 90.09637 * 12 6 5 14 14 C 1.53010 * 109.46676 * 190.00214 * 13 12 6 15 15 C 1.53003 * 109.46575 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.46761 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00613 * 0.02562 * 16 15 14 18 18 C 1.37885 * 120.00094 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99730 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00261 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47126 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46911 * 120.00310 * 20 18 16 23 23 H 1.48496 * 109.46914 * 240.00350 * 20 18 16 24 24 H 1.08996 * 109.47180 * 181.02995 * 1 2 3 25 25 H 1.09003 * 109.46576 * 301.02502 * 1 2 3 26 26 H 1.08990 * 109.46991 * 61.02818 * 1 2 3 27 27 H 1.09002 * 109.02965 * 298.74069 * 3 2 1 28 28 H 1.09002 * 109.02646 * 57.58079 * 3 2 1 29 29 H 1.09003 * 109.13648 * 174.10886 * 4 3 2 30 30 H 1.09007 * 109.13149 * 293.27877 * 4 3 2 31 31 H 1.09004 * 109.94954 * 64.34978 * 5 4 3 32 32 H 1.09005 * 109.95136 * 185.60876 * 5 4 3 33 33 H 1.09002 * 110.95314 * 324.19038 * 10 8 2 34 34 H 1.09001 * 110.95090 * 87.86735 * 10 8 2 35 35 H 1.08999 * 109.93122 * 141.87550 * 11 10 8 36 36 H 1.09002 * 109.93096 * 263.21447 * 11 10 8 37 37 H 1.08997 * 109.47576 * 310.00174 * 13 12 6 38 38 H 1.08995 * 109.46839 * 70.00751 * 13 12 6 39 39 H 1.08988 * 109.47276 * 300.00121 * 14 13 12 40 40 H 1.08995 * 109.47048 * 60.00665 * 14 13 12 41 41 H 1.09002 * 109.47312 * 300.00247 * 15 14 13 42 42 H 1.09005 * 109.46889 * 60.00484 * 15 14 13 43 43 H 0.96997 * 119.99800 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9981 1.3781 0.0000 4 6 3.5232 1.3980 0.0455 5 6 4.1247 0.5419 -1.0830 6 6 3.5235 -0.8442 -0.9555 7 1 3.7194 -1.2364 0.0425 8 6 1.9908 -0.7008 -1.1650 9 1 1.7609 -0.1548 -2.0799 10 6 1.5906 -2.1776 -1.2944 11 6 2.7645 -2.7554 -2.1316 12 7 3.9224 -1.8418 -1.9422 13 6 5.1089 -2.5821 -1.4923 14 6 5.6442 -3.4359 -2.6437 15 6 6.8802 -4.2064 -2.1753 16 6 7.4071 -5.0478 -3.3091 17 1 6.9104 -5.0341 -4.2679 18 6 8.5241 -5.8345 -3.1226 19 7 9.1293 -5.8509 -1.9551 20 14 9.1776 -6.8769 -4.5282 21 1 8.3243 -6.6814 -5.7278 22 1 10.5709 -6.4691 -4.8406 23 1 9.1574 -8.3083 -4.1338 24 1 -0.3633 -1.0275 0.0185 25 1 -0.3632 0.5297 0.8807 26 1 -0.3633 0.4977 -0.8990 27 1 1.6629 1.8875 -0.9035 28 1 1.6097 1.9079 0.8699 29 1 3.8706 2.4256 -0.0617 30 1 3.8571 1.0065 1.0065 31 1 3.8689 0.9707 -2.0519 32 1 5.2079 0.4892 -0.9729 33 1 1.5382 -2.6545 -0.3156 34 1 0.6449 -2.2799 -1.8267 35 1 3.0171 -3.7547 -1.7772 36 1 2.4873 -2.7907 -3.1852 37 1 5.8776 -1.8779 -1.1743 38 1 4.8390 -3.2275 -0.6564 39 1 4.8755 -4.1401 -2.9617 40 1 5.9140 -2.7906 -3.4796 41 1 7.6488 -3.5018 -1.8575 42 1 6.6108 -4.8518 -1.3392 43 1 9.9148 -6.4045 -1.8238 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720354110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:26 Heat of formation + Delta-G solvation = -5.636221 kcal Electronic energy + Delta-G solvation = -19191.576619 eV Core-core repulsion = 16463.717910 eV Total energy + Delta-G solvation = -2727.858709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34876 -36.93798 -33.97571 -33.70463 -32.05355 -29.66306 -28.87203 -26.63973 -26.00001 -23.22243 -22.88988 -21.67053 -20.63991 -19.76111 -19.39940 -16.41586 -15.96242 -15.59070 -15.32455 -14.74333 -14.67626 -14.38238 -13.98518 -13.64845 -13.51293 -13.05802 -12.71837 -12.42024 -12.15010 -12.05019 -11.83567 -11.54781 -11.26020 -11.12019 -10.96084 -10.88797 -10.76891 -10.62106 -10.48184 -10.38265 -10.12101 -9.58880 -9.26146 -8.98873 -8.59052 -8.30100 -8.01269 -5.95272 -3.96916 3.34207 3.41414 3.46176 3.62574 4.17552 4.47412 4.53752 4.67745 4.86557 4.90406 5.05936 5.14676 5.18792 5.25918 5.33934 5.40566 5.42039 5.50712 5.64521 5.65702 5.71951 5.78306 5.81191 5.89222 5.90419 5.98190 6.04824 6.16782 6.23718 6.33939 6.41710 6.75585 6.79328 6.88763 6.92759 7.17781 7.33917 7.51021 7.74635 7.89754 8.05914 8.49645 9.10672 9.66825 11.16284 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.044210 B = 0.003874 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.182800 B = 7225.661545 C = 7574.608737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.524 5.524 3 C 0.052 3.948 4 C -0.116 4.116 5 C -0.104 4.104 6 C 0.077 3.923 7 H 0.054 0.946 8 C 0.067 3.933 9 H 0.056 0.944 10 C -0.130 4.130 11 C 0.045 3.955 12 N -0.522 5.522 13 C 0.053 3.947 14 C -0.102 4.102 15 C 0.021 3.979 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.024 0.976 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.013 0.987 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.824 13.751 4.260 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.248 5.248 3 C -0.075 4.075 4 C -0.154 4.154 5 C -0.143 4.143 6 C -0.032 4.032 7 H 0.072 0.928 8 C -0.042 4.042 9 H 0.074 0.926 10 C -0.169 4.169 11 C -0.083 4.083 12 N -0.246 5.246 13 C -0.074 4.074 14 C -0.140 4.140 15 C -0.017 4.017 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.379 13.667 4.324 21.765 hybrid contribution -0.033 -0.625 -0.638 0.894 sum -16.411 13.042 3.686 21.284 Atomic orbital electron populations 1.22383 0.87634 1.02261 1.00370 1.62575 1.07670 1.14336 1.40195 1.22154 0.95858 0.88951 1.00562 1.21605 0.93986 1.00064 0.99763 1.21369 1.00468 0.93960 0.98466 1.21997 0.92953 0.93308 0.94978 0.92782 1.22520 0.95475 0.94750 0.91488 0.92595 1.22613 0.98702 0.94665 1.00928 1.23192 0.89183 0.95809 1.00141 1.63391 1.04364 1.12950 1.43901 1.22462 0.91180 0.96033 0.97715 1.21606 0.98952 0.97123 0.96325 1.19086 0.91489 0.94590 0.96510 1.21301 1.11308 1.24930 0.97905 0.92640 1.25035 0.96843 0.97074 0.95626 1.69980 1.20617 1.40406 1.22653 0.86550 0.78789 0.80132 0.82629 1.19727 1.21049 1.21076 0.91161 0.91514 0.95722 0.94970 0.90852 0.91157 0.91293 0.91533 0.91235 0.90679 0.91232 0.91943 0.90542 0.91436 0.95130 0.93584 0.92706 0.96648 0.96866 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.40 60.07 0.56 0.76 16 2 N -0.52 -5.71 4.96 -233.67 -1.16 -6.87 16 3 C 0.05 0.50 5.36 -3.63 -0.02 0.48 16 4 C -0.12 -1.15 6.00 -26.48 -0.16 -1.31 16 5 C -0.10 -1.28 6.01 -26.97 -0.16 -1.44 16 6 C 0.08 1.06 1.87 -67.71 -0.13 0.94 16 7 H 0.05 0.83 7.81 -51.93 -0.41 0.42 16 8 C 0.07 0.81 2.11 -66.87 -0.14 0.67 16 9 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 10 C -0.13 -1.54 5.74 -25.21 -0.14 -1.68 16 11 C 0.04 0.63 6.20 -1.59 -0.01 0.62 16 12 N -0.52 -8.27 5.11 -223.71 -1.14 -9.42 16 13 C 0.05 0.98 4.53 -3.82 -0.02 0.96 16 14 C -0.10 -2.20 5.21 -26.72 -0.14 -2.34 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 20 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 24 H 0.07 0.60 7.44 -51.93 -0.39 0.21 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.94 7.12 -51.93 -0.37 0.57 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 38 H 0.03 0.57 7.91 -51.93 -0.41 0.16 16 39 H 0.05 0.98 7.31 -51.94 -0.38 0.60 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -30.54 329.95 -10.77 -41.30 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -8.25 Total: -4.58 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -0.90 Total: -15.71 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -1.57 Total: -43.01 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.54 -10.77 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720354110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.667 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds