Wall clock time and date at job start Mon Mar 30 2020 04:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47652 * 111.00451 * 2 1 4 4 C 1.52585 * 111.71449 * 181.49174 * 3 2 1 5 5 C 1.53859 * 111.25617 * 306.39954 * 4 3 2 6 6 C 1.51797 * 106.93421 * 55.32568 * 5 4 3 7 7 H 1.08999 * 110.71179 * 57.33144 * 6 5 4 8 8 C 1.45449 * 111.00004 * 121.03369 * 2 1 3 9 9 H 1.08996 * 110.66344 * 291.04697 * 8 2 1 10 10 C 1.52869 * 116.67348 * 57.81321 * 8 2 1 11 11 C 1.54990 * 103.98375 * 143.85466 * 10 8 2 12 12 N 1.46723 * 116.54804 * 184.04791 * 6 5 4 13 13 C 1.46901 * 110.99508 * 278.91071 * 12 6 5 14 14 C 1.52999 * 109.47179 * 310.58814 * 13 12 6 15 15 C 1.53003 * 109.47033 * 185.61581 * 14 13 12 16 16 C 1.50695 * 109.47306 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00149 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00387 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99593 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00231 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46951 * 90.00025 * 20 18 16 22 22 H 1.48503 * 109.46697 * 209.99869 * 20 18 16 23 23 H 1.48500 * 109.46950 * 330.00054 * 20 18 16 24 24 H 1.09007 * 109.47140 * 298.96659 * 1 2 3 25 25 H 1.08999 * 109.47249 * 58.96130 * 1 2 3 26 26 H 1.08996 * 109.47358 * 178.96992 * 1 2 3 27 27 H 1.09007 * 109.03044 * 60.91082 * 3 2 1 28 28 H 1.09000 * 108.96914 * 302.03211 * 3 2 1 29 29 H 1.09001 * 109.12205 * 185.94717 * 4 3 2 30 30 H 1.08999 * 109.12284 * 66.86315 * 4 3 2 31 31 H 1.09001 * 109.96497 * 295.97080 * 5 4 3 32 32 H 1.09003 * 109.96391 * 174.68309 * 5 4 3 33 33 H 1.09011 * 110.52289 * 25.22978 * 10 8 2 34 34 H 1.08994 * 110.64976 * 262.54030 * 10 8 2 35 35 H 1.09000 * 109.98805 * 238.35107 * 11 10 8 36 36 H 1.08995 * 110.02451 * 117.05118 * 11 10 8 37 37 H 1.09007 * 109.46478 * 190.59371 * 13 12 6 38 38 H 1.08994 * 109.47186 * 70.59475 * 13 12 6 39 39 H 1.09001 * 109.46976 * 65.61930 * 14 13 12 40 40 H 1.08998 * 109.47503 * 305.61053 * 14 13 12 41 41 H 1.09000 * 109.47273 * 300.00171 * 15 14 13 42 42 H 1.08998 * 109.47126 * 59.99848 * 15 14 13 43 43 H 0.96998 * 119.99762 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9983 1.3784 0.0000 4 6 3.5235 1.3975 -0.0369 5 6 4.1196 0.5429 1.0952 6 6 3.5239 -0.8468 0.9607 7 1 3.7324 -1.2619 -0.0253 8 6 1.9903 -0.7000 1.1635 9 1 1.7862 -0.1373 2.0744 10 6 1.5569 -2.1554 1.3399 11 6 2.8116 -2.8514 1.9258 12 7 3.8832 -1.8177 2.0004 13 6 5.2026 -2.4072 1.7367 14 6 5.2650 -2.8896 0.2860 15 6 6.5843 -3.6278 0.0503 16 6 6.6461 -4.1023 -1.3786 17 1 5.8266 -3.8975 -2.0516 18 6 7.7493 -4.7971 -1.8273 19 7 8.7475 -5.0460 -1.0080 20 14 7.8261 -5.3847 -3.5988 21 1 8.4536 -4.3353 -4.4416 22 1 8.6345 -6.6282 -3.6732 23 1 6.4515 -5.6576 -4.0899 24 1 -0.3634 0.4977 0.8992 25 1 -0.3634 0.5299 -0.8805 26 1 -0.3634 -1.0274 -0.0185 27 1 1.6579 1.8898 0.9005 28 1 1.6148 1.9051 -0.8739 29 1 3.8705 2.4251 0.0710 30 1 3.8624 1.0062 -0.9961 31 1 3.8544 0.9694 2.0626 32 1 5.2038 0.4944 0.9935 33 1 1.2904 -2.5940 0.3782 34 1 0.7208 -2.2258 2.0357 35 1 3.1247 -3.6662 1.2730 36 1 2.5943 -3.2353 2.9225 37 1 5.3641 -3.2512 2.4074 38 1 5.9756 -1.6572 1.9038 39 1 5.2033 -2.0326 -0.3847 40 1 4.4314 -3.5643 0.0913 41 1 7.4180 -2.9531 0.2451 42 1 6.6460 -4.4847 0.7211 43 1 9.5234 -5.5351 -1.3235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720354113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:29 Heat of formation + Delta-G solvation = -20.107637 kcal Electronic energy + Delta-G solvation = -19661.359329 eV Core-core repulsion = 16932.873092 eV Total energy + Delta-G solvation = -2728.486237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47970 -38.18535 -35.76406 -34.63410 -33.74853 -31.19906 -29.80684 -27.76216 -27.38807 -24.92083 -23.99041 -23.07614 -22.26117 -20.99067 -20.19807 -18.51723 -17.16554 -16.58127 -16.49664 -16.29396 -15.74069 -15.56943 -15.36717 -14.97530 -14.58660 -14.31359 -14.05749 -13.81046 -13.41726 -13.16014 -13.09333 -12.87347 -12.67552 -12.45428 -12.40728 -12.35808 -12.21905 -11.86583 -11.74158 -11.56030 -11.41904 -11.32211 -11.22642 -11.01105 -10.56886 -9.35450 -9.25897 -8.21680 -6.33684 1.37274 1.38756 1.49987 2.38782 2.76848 3.10408 3.24834 3.48680 3.73754 4.03762 4.06085 4.13382 4.17756 4.28689 4.32646 4.39170 4.43281 4.55640 4.57439 4.61214 4.65031 4.76464 4.82856 4.89475 4.92958 4.96538 5.02788 5.05411 5.07858 5.12476 5.19336 5.24506 5.27462 5.41250 5.48641 5.66539 5.81804 5.88136 6.03623 6.17346 6.21527 6.25061 6.82147 7.35552 8.89472 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025255 B = 0.005034 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.442993 B = 5560.784558 C = 5760.686271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.541 5.541 3 C 0.055 3.945 4 C -0.114 4.114 5 C -0.102 4.102 6 C 0.054 3.946 7 H 0.047 0.953 8 C 0.082 3.918 9 H 0.052 0.948 10 C -0.113 4.113 11 C 0.026 3.974 12 N -0.507 5.507 13 C 0.055 3.945 14 C -0.123 4.123 15 C 0.030 3.970 16 C -0.544 4.544 17 H 0.053 0.947 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.963 3.037 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.266 1.266 24 H 0.033 0.967 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.046 0.954 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.918 12.262 4.570 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.266 5.266 3 C -0.073 4.073 4 C -0.152 4.152 5 C -0.140 4.140 6 C -0.055 4.055 7 H 0.065 0.935 8 C -0.027 4.027 9 H 0.069 0.931 10 C -0.151 4.151 11 C -0.102 4.102 12 N -0.230 5.230 13 C -0.074 4.074 14 C -0.161 4.161 15 C -0.008 4.008 16 C -0.582 4.582 17 H 0.071 0.929 18 C -0.196 4.196 19 N -0.572 5.572 20 Si 0.787 3.213 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.190 1.190 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.577 12.183 4.683 21.098 hybrid contribution 0.423 -0.661 -0.903 1.197 sum -16.154 11.522 3.779 20.199 Atomic orbital electron populations 1.22418 0.86104 1.02674 1.01291 1.62481 1.09149 1.15125 1.39860 1.22186 0.95028 0.88417 1.01624 1.21584 0.94766 1.00616 0.98229 1.21357 0.99633 0.93503 0.99472 1.22526 0.95228 0.93637 0.94121 0.93471 1.22082 0.93888 0.95072 0.91701 0.93050 1.22174 0.97458 0.94023 1.01495 1.23340 0.91072 0.94300 1.01467 1.65018 1.01610 1.12025 1.44312 1.22190 0.91481 0.98853 0.94836 1.21967 0.98194 0.98823 0.97153 1.18910 0.92661 0.93963 0.95231 1.21648 1.03405 1.35565 0.97583 0.92864 1.25959 0.95200 0.96074 1.02369 1.70092 1.08101 1.41648 1.37327 0.85477 0.78460 0.77965 0.79354 1.19649 1.20396 1.18985 0.94885 0.90394 0.91086 0.94026 0.89408 0.89120 0.92723 0.90919 0.92808 0.91251 0.89076 0.94045 0.89152 0.91301 0.91256 0.93420 0.93520 0.98991 0.98966 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.38 127.69 1.20 1.59 16 2 N -0.54 -12.22 4.98 -894.80 -4.46 -16.68 16 3 C 0.05 1.06 5.36 86.02 0.46 1.52 16 4 C -0.11 -2.47 5.99 30.75 0.18 -2.28 16 5 C -0.10 -2.64 5.96 30.49 0.18 -2.46 16 6 C 0.05 1.60 1.52 45.38 0.07 1.67 16 7 H 0.05 1.70 5.53 -2.39 -0.01 1.68 16 8 C 0.08 2.01 2.08 45.97 0.10 2.11 16 9 H 0.05 1.25 7.98 -2.39 -0.02 1.23 16 10 C -0.11 -2.66 5.74 31.23 0.18 -2.48 16 11 C 0.03 0.73 6.50 86.56 0.56 1.29 16 12 N -0.51 -15.84 5.47 -858.92 -4.70 -20.54 16 13 C 0.05 2.01 5.46 86.30 0.47 2.49 16 14 C -0.12 -5.35 4.13 30.59 0.13 -5.22 16 15 C 0.03 1.65 4.97 29.85 0.15 1.79 16 16 C -0.54 -32.16 9.11 25.60 0.23 -31.92 16 17 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 18 C 0.00 0.11 5.46 84.65 0.46 0.57 16 19 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 20 Si 0.96 45.31 29.54 68.60 2.03 47.33 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H 0.03 0.50 8.14 -2.38 -0.02 0.48 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 1.19 7.32 -2.39 -0.02 1.17 16 27 H 0.04 0.73 8.10 -2.38 -0.02 0.71 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.72 8.01 -2.38 -0.02 1.70 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.32 5.90 -2.39 -0.01 1.31 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.07 2.54 8.13 -2.38 -0.02 2.52 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.05 2.11 6.38 -2.39 -0.02 2.10 16 40 H 0.05 2.04 6.18 -2.39 -0.01 2.03 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -65.41 323.50 -1.53 -66.94 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.94 Total: 11.77 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 4.37 Total: -31.34 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -8.87 Total: -94.71 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -65.41 -1.53 -66.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720354113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.831 kcal (2) G-P(sol) polarization free energy of solvation -65.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds