Wall clock time and date at job start Mon Mar 30 2020 04:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46364 * 110.99816 * 2 1 4 4 C 1.53515 * 107.50101 * 177.28676 * 3 2 1 5 5 C 1.52396 * 107.78826 * 68.39798 * 4 3 2 6 6 C 1.51807 * 112.35988 * 303.62117 * 5 4 3 7 7 H 1.08997 * 108.57189 * 267.49941 * 6 5 4 8 8 C 1.42992 * 111.00122 * 229.99930 * 2 1 3 9 9 H 1.09008 * 105.74757 * 275.50371 * 8 2 1 10 10 C 1.54092 * 113.52600 * 30.05958 * 8 2 1 11 11 C 1.55498 * 101.27359 * 162.20051 * 10 8 2 12 12 N 1.48618 * 102.79634 * 320.04340 * 11 10 8 13 13 C 1.46898 * 110.99972 * 158.72691 * 12 11 10 14 14 C 1.53006 * 109.47006 * 69.87607 * 13 12 11 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47055 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37887 * 120.00079 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99685 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46879 * 60.00177 * 20 18 16 22 22 H 1.48494 * 109.47196 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47151 * 300.00589 * 20 18 16 24 24 H 1.09000 * 109.46760 * 190.00659 * 1 2 3 25 25 H 1.08994 * 109.46998 * 310.00718 * 1 2 3 26 26 H 1.09004 * 109.46955 * 70.00443 * 1 2 3 27 27 H 1.08997 * 109.85103 * 296.78905 * 3 2 1 28 28 H 1.08999 * 109.84638 * 57.79337 * 3 2 1 29 29 H 1.08998 * 109.79250 * 187.96398 * 4 3 2 30 30 H 1.08990 * 109.79985 * 308.76161 * 4 3 2 31 31 H 1.08995 * 108.90829 * 64.36327 * 5 4 3 32 32 H 1.08996 * 108.90507 * 182.88478 * 5 4 3 33 33 H 1.09004 * 111.06150 * 44.20978 * 10 8 2 34 34 H 1.08995 * 111.07001 * 280.20050 * 10 8 2 35 35 H 1.08997 * 110.74836 * 201.71996 * 11 10 8 36 36 H 1.08995 * 110.90174 * 78.44120 * 11 10 8 37 37 H 1.09001 * 109.47392 * 309.87905 * 13 12 11 38 38 H 1.09001 * 109.47520 * 189.87628 * 13 12 11 39 39 H 1.09001 * 109.47002 * 299.99782 * 14 13 12 40 40 H 1.08993 * 109.46955 * 60.00219 * 14 13 12 41 41 H 1.09001 * 109.47289 * 299.99953 * 15 14 13 42 42 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 43 43 H 0.96999 * 119.99910 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9935 1.3664 0.0000 4 6 3.5243 1.2734 0.0693 5 6 4.0154 0.6891 -1.2497 6 6 3.3821 -0.6560 -1.5569 7 1 4.0301 -1.4416 -1.1684 8 6 1.9815 -0.8581 -1.0226 9 1 1.9936 -1.8588 -0.5905 10 6 1.0603 -0.9668 -2.2531 11 6 2.0420 -1.5311 -3.3188 12 7 3.2960 -0.7837 -3.0398 13 6 4.4637 -1.4961 -3.5754 14 6 4.4380 -1.4403 -5.1043 15 6 5.6539 -2.1827 -5.6622 16 6 5.6283 -2.1283 -7.1679 17 1 4.8254 -1.6150 -7.6762 18 6 6.6305 -2.7328 -7.8968 19 7 7.6085 -3.3574 -7.2779 20 14 6.5992 -2.6647 -9.7633 21 1 6.6369 -1.2482 -10.2076 22 1 7.7792 -3.3854 -10.3048 23 1 5.3561 -3.3067 -10.2613 24 1 -0.3633 -1.0121 0.1786 25 1 -0.3633 0.6606 0.7871 26 1 -0.3633 0.3514 -0.9658 27 1 1.6947 1.8776 -0.9152 28 1 1.6160 1.9077 0.8675 29 1 3.9483 2.2671 0.2134 30 1 3.8177 0.6238 0.8938 31 1 3.7762 1.3840 -2.0547 32 1 5.0974 0.5670 -1.2008 33 1 0.6831 0.0125 -2.5477 34 1 0.2407 -1.6613 -2.0689 35 1 1.6823 -1.3193 -4.3257 36 1 2.1920 -2.6019 -3.1811 37 1 4.4361 -2.5358 -3.2494 38 1 5.3760 -1.0248 -3.2099 39 1 3.5257 -1.9117 -5.4698 40 1 4.4657 -0.4006 -5.4303 41 1 6.5664 -1.7118 -5.2967 42 1 5.6259 -3.2225 -5.3360 43 1 8.3134 -3.7830 -7.7906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720354116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:32 Heat of formation + Delta-G solvation = -1.318015 kcal Electronic energy + Delta-G solvation = -19266.882847 eV Core-core repulsion = 16539.211389 eV Total energy + Delta-G solvation = -2727.671457 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.43518 -36.85490 -34.02212 -33.88248 -32.02300 -29.53359 -29.05150 -26.74164 -25.97925 -23.13570 -23.11402 -22.09805 -20.94673 -19.92059 -18.31413 -16.60086 -16.31798 -15.74536 -15.22242 -14.94170 -14.49808 -14.37725 -14.11732 -13.60744 -13.25196 -13.17477 -12.54054 -12.41376 -12.19191 -11.98422 -11.87668 -11.67222 -11.34518 -11.27744 -11.02202 -10.87617 -10.74536 -10.52354 -10.44729 -10.28665 -10.27291 -9.60962 -9.30084 -9.03847 -8.33764 -8.31088 -8.12396 -5.97070 -3.99068 3.35277 3.39258 3.42095 3.73485 4.12941 4.47566 4.53302 4.63950 4.78187 4.95982 5.07734 5.15337 5.23720 5.29223 5.33707 5.38564 5.44589 5.54095 5.66155 5.67638 5.70527 5.74934 5.82830 5.86717 5.96323 6.01448 6.08304 6.13111 6.18724 6.31932 6.40480 6.70375 6.81131 6.95288 7.08882 7.17058 7.28200 7.39930 7.71156 7.86573 8.03485 8.46983 9.07900 9.64635 11.14406 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.044136 B = 0.003905 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.244995 B = 7168.239132 C = 7478.146209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.542 5.542 3 C 0.061 3.939 4 C -0.116 4.116 5 C -0.109 4.109 6 C 0.075 3.925 7 H 0.054 0.946 8 C 0.095 3.905 9 H 0.060 0.940 10 C -0.149 4.149 11 C 0.037 3.963 12 N -0.515 5.515 13 C 0.048 3.952 14 C -0.101 4.101 15 C 0.022 3.978 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.033 0.967 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.030 0.970 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.013 0.987 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.949 7.378 15.850 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.265 5.265 3 C -0.066 4.066 4 C -0.154 4.154 5 C -0.147 4.147 6 C -0.034 4.034 7 H 0.072 0.928 8 C -0.016 4.016 9 H 0.078 0.922 10 C -0.188 4.188 11 C -0.091 4.091 12 N -0.239 5.239 13 C -0.080 4.080 14 C -0.140 4.140 15 C -0.016 4.016 16 C -0.557 4.557 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.607 7.573 15.969 21.710 hybrid contribution -0.079 -0.645 -1.479 1.616 sum -12.686 6.928 14.490 20.467 Atomic orbital electron populations 1.22345 0.86814 1.02233 1.00503 1.59856 1.07557 1.12528 1.46578 1.22057 0.95597 0.88606 1.00317 1.21560 0.94654 1.01040 0.98171 1.21172 0.99828 0.96346 0.97393 1.21746 0.94438 0.98132 0.89105 0.92794 1.20784 0.93761 0.96896 0.90113 0.92174 1.23165 0.98037 1.01405 0.96219 1.23244 0.90327 0.96032 0.99543 1.65273 1.02747 1.47212 1.08683 1.22479 0.92111 0.95353 0.98029 1.21589 1.00516 1.00995 0.90852 1.19071 0.92030 0.95053 0.95411 1.21217 1.08494 1.34161 0.91819 0.92766 1.25030 0.95538 0.95418 0.98507 1.69958 1.12221 1.35977 1.35485 0.86658 0.77368 0.78184 0.85796 1.20222 1.21309 1.20280 0.91564 0.91628 0.94854 0.94547 0.90827 0.91241 0.91138 0.90752 0.92050 0.90983 0.90971 0.89781 0.93524 0.95150 0.91272 0.93622 0.92697 0.96640 0.96876 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 8.73 60.07 0.52 0.77 16 2 N -0.54 -5.83 4.65 -238.37 -1.11 -6.94 16 3 C 0.06 0.61 5.62 -3.85 -0.02 0.59 16 4 C -0.12 -1.18 6.14 -26.77 -0.16 -1.34 16 5 C -0.11 -1.36 5.52 -27.65 -0.15 -1.51 16 6 C 0.07 1.01 2.74 -67.98 -0.19 0.82 16 7 H 0.05 0.76 7.71 -51.93 -0.40 0.36 16 8 C 0.09 1.14 2.69 -70.08 -0.19 0.95 16 9 H 0.06 0.76 8.05 -51.92 -0.42 0.34 16 10 C -0.15 -1.73 5.06 -24.83 -0.13 -1.85 16 11 C 0.04 0.52 5.83 -1.54 -0.01 0.51 16 12 N -0.51 -8.02 4.65 -223.53 -1.04 -9.06 16 13 C 0.05 0.86 4.66 -3.82 -0.02 0.85 16 14 C -0.10 -2.17 5.21 -26.73 -0.14 -2.31 16 15 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 16 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 20 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.49 8.04 -51.93 -0.42 0.07 16 26 H 0.03 0.29 6.33 -51.93 -0.33 -0.04 16 27 H 0.04 0.39 8.11 -51.93 -0.42 -0.03 16 28 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.02 7.93 -51.93 -0.41 0.60 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.86 7.22 -51.93 -0.37 0.49 16 34 H 0.07 0.73 8.00 -51.93 -0.42 0.32 16 35 H 0.08 1.22 7.81 -51.93 -0.41 0.82 16 36 H 0.05 0.67 7.84 -51.93 -0.41 0.26 16 37 H 0.03 0.55 7.89 -51.93 -0.41 0.14 16 38 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 39 H 0.05 0.96 7.28 -51.93 -0.38 0.59 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -30.25 326.63 -10.67 -40.92 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -8.13 Total: -4.27 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -1.03 Total: -15.89 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -1.41 Total: -42.67 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.25 -10.67 -40.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720354116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.602 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds