Wall clock time and date at job start Mon Mar 30 2020 04:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46364 * 110.99816 * 2 1 4 4 C 1.53515 * 107.50101 * 177.28676 * 3 2 1 5 5 C 1.52396 * 107.78826 * 68.39798 * 4 3 2 6 6 C 1.51807 * 112.35988 * 303.62117 * 5 4 3 7 7 H 1.08997 * 108.57189 * 267.49941 * 6 5 4 8 8 C 1.42992 * 111.00122 * 229.99930 * 2 1 3 9 9 H 1.09008 * 105.74757 * 275.50371 * 8 2 1 10 10 C 1.54092 * 113.52600 * 30.05958 * 8 2 1 11 11 C 1.55498 * 101.27359 * 162.20051 * 10 8 2 12 12 N 1.48618 * 102.79634 * 320.04340 * 11 10 8 13 13 C 1.46898 * 110.99972 * 158.72691 * 12 11 10 14 14 C 1.53006 * 109.47006 * 69.87607 * 13 12 11 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47055 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37887 * 120.00079 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99685 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46879 * 60.00177 * 20 18 16 22 22 H 1.48494 * 109.47196 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47151 * 300.00589 * 20 18 16 24 24 H 1.09000 * 109.46760 * 190.00659 * 1 2 3 25 25 H 1.08994 * 109.46998 * 310.00718 * 1 2 3 26 26 H 1.09004 * 109.46955 * 70.00443 * 1 2 3 27 27 H 1.08997 * 109.85103 * 296.78905 * 3 2 1 28 28 H 1.08999 * 109.84638 * 57.79337 * 3 2 1 29 29 H 1.08998 * 109.79250 * 187.96398 * 4 3 2 30 30 H 1.08990 * 109.79985 * 308.76161 * 4 3 2 31 31 H 1.08995 * 108.90829 * 64.36327 * 5 4 3 32 32 H 1.08996 * 108.90507 * 182.88478 * 5 4 3 33 33 H 1.09004 * 111.06150 * 44.20978 * 10 8 2 34 34 H 1.08995 * 111.07001 * 280.20050 * 10 8 2 35 35 H 1.08997 * 110.74836 * 201.71996 * 11 10 8 36 36 H 1.08995 * 110.90174 * 78.44120 * 11 10 8 37 37 H 1.09001 * 109.47392 * 309.87905 * 13 12 11 38 38 H 1.09001 * 109.47520 * 189.87628 * 13 12 11 39 39 H 1.09001 * 109.47002 * 299.99782 * 14 13 12 40 40 H 1.08993 * 109.46955 * 60.00219 * 14 13 12 41 41 H 1.09001 * 109.47289 * 299.99953 * 15 14 13 42 42 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 43 43 H 0.96999 * 119.99910 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9935 1.3664 0.0000 4 6 3.5243 1.2734 0.0693 5 6 4.0154 0.6891 -1.2497 6 6 3.3821 -0.6560 -1.5569 7 1 4.0301 -1.4416 -1.1684 8 6 1.9815 -0.8581 -1.0226 9 1 1.9936 -1.8588 -0.5905 10 6 1.0603 -0.9668 -2.2531 11 6 2.0420 -1.5311 -3.3188 12 7 3.2960 -0.7837 -3.0398 13 6 4.4637 -1.4961 -3.5754 14 6 4.4380 -1.4403 -5.1043 15 6 5.6539 -2.1827 -5.6622 16 6 5.6283 -2.1283 -7.1679 17 1 4.8254 -1.6150 -7.6762 18 6 6.6305 -2.7328 -7.8968 19 7 7.6085 -3.3574 -7.2779 20 14 6.5992 -2.6647 -9.7633 21 1 6.6369 -1.2482 -10.2076 22 1 7.7792 -3.3854 -10.3048 23 1 5.3561 -3.3067 -10.2613 24 1 -0.3633 -1.0121 0.1786 25 1 -0.3633 0.6606 0.7871 26 1 -0.3633 0.3514 -0.9658 27 1 1.6947 1.8776 -0.9152 28 1 1.6160 1.9077 0.8675 29 1 3.9483 2.2671 0.2134 30 1 3.8177 0.6238 0.8938 31 1 3.7762 1.3840 -2.0547 32 1 5.0974 0.5670 -1.2008 33 1 0.6831 0.0125 -2.5477 34 1 0.2407 -1.6613 -2.0689 35 1 1.6823 -1.3193 -4.3257 36 1 2.1920 -2.6019 -3.1811 37 1 4.4361 -2.5358 -3.2494 38 1 5.3760 -1.0248 -3.2099 39 1 3.5257 -1.9117 -5.4698 40 1 4.4657 -0.4006 -5.4303 41 1 6.5664 -1.7118 -5.2967 42 1 5.6259 -3.2225 -5.3360 43 1 8.3134 -3.7830 -7.7906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720354116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:31 Heat of formation + Delta-G solvation = -20.619402 kcal Electronic energy + Delta-G solvation = -19267.719818 eV Core-core repulsion = 16539.211389 eV Total energy + Delta-G solvation = -2728.508428 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44501 -38.00241 -35.84086 -34.87067 -33.86007 -31.06305 -30.03417 -27.82836 -27.49887 -24.79974 -24.07584 -23.09412 -22.39110 -21.51223 -19.27123 -18.53058 -17.43476 -17.01048 -16.51202 -16.30110 -16.07968 -15.49361 -15.34100 -14.59547 -14.48395 -14.33675 -14.18742 -13.70461 -13.57465 -13.26498 -12.95732 -12.84862 -12.68456 -12.57859 -12.48679 -12.36372 -12.13570 -12.09978 -11.77553 -11.47044 -11.40411 -11.30336 -11.20553 -11.05484 -10.56446 -9.47638 -9.07724 -8.21441 -6.32904 1.38802 1.42306 1.50335 2.39784 2.79436 3.06012 3.11410 3.50693 3.63889 3.82260 4.07584 4.08951 4.15973 4.27621 4.31360 4.33018 4.37668 4.60669 4.65276 4.66634 4.67599 4.76943 4.82032 4.85490 4.89468 4.97721 4.99951 5.07104 5.09273 5.11670 5.16974 5.18426 5.26473 5.39893 5.49740 5.70305 5.83159 5.95121 6.00699 6.19816 6.25165 6.35689 6.83272 7.36281 8.90426 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.044136 B = 0.003905 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.244995 B = 7168.239132 C = 7478.146209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.549 5.549 3 C 0.062 3.938 4 C -0.110 4.110 5 C -0.107 4.107 6 C 0.073 3.927 7 H 0.044 0.956 8 C 0.100 3.900 9 H 0.055 0.945 10 C -0.135 4.135 11 C 0.031 3.969 12 N -0.521 5.521 13 C 0.062 3.938 14 C -0.084 4.084 15 C 0.026 3.974 16 C -0.545 4.545 17 H 0.058 0.942 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.266 1.266 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.026 0.974 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.050 0.950 41 H -0.009 1.009 42 H -0.010 1.010 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.540 8.254 16.132 23.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.272 5.272 3 C -0.065 4.065 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.036 4.036 7 H 0.063 0.937 8 C -0.011 4.011 9 H 0.073 0.927 10 C -0.174 4.174 11 C -0.098 4.098 12 N -0.246 5.246 13 C -0.067 4.067 14 C -0.122 4.122 15 C -0.011 4.011 16 C -0.583 4.583 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.191 1.191 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.009 0.991 42 H 0.008 0.992 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.219 8.460 16.267 23.203 hybrid contribution 0.428 -0.920 -1.523 1.830 sum -13.791 7.540 14.744 21.550 Atomic orbital electron populations 1.22425 0.85355 1.03067 1.01137 1.59907 1.08875 1.12794 1.45659 1.22114 0.95219 0.88272 1.00892 1.21544 0.95106 1.01721 0.96469 1.21155 0.99479 0.95497 0.98434 1.21820 0.95705 0.98470 0.87558 0.93735 1.20669 0.92755 0.97144 0.90486 0.92673 1.23102 0.97801 1.01666 0.94863 1.23317 0.90326 0.95878 1.00236 1.65236 1.02216 1.46813 1.10330 1.22174 0.93365 0.95423 0.95712 1.21314 0.98111 0.99692 0.93124 1.18966 0.93216 0.94027 0.94918 1.21648 1.08940 1.34534 0.93148 0.92333 1.26004 0.94925 0.94707 1.04194 1.70093 1.12940 1.36640 1.37714 0.85482 0.77844 0.78707 0.78913 1.19151 1.20658 1.19118 0.91037 0.90016 0.94830 0.95300 0.88708 0.89554 0.91154 0.92056 0.92688 0.90966 0.88956 0.90380 0.93868 0.95616 0.91754 0.93356 0.93147 0.99050 0.99204 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 8.73 127.69 1.11 1.51 16 2 N -0.55 -10.56 4.65 -908.07 -4.22 -14.78 16 3 C 0.06 1.09 5.62 86.58 0.49 1.57 16 4 C -0.11 -2.04 6.14 30.57 0.19 -1.85 16 5 C -0.11 -2.61 5.52 30.00 0.17 -2.45 16 6 C 0.07 1.94 2.74 43.53 0.12 2.06 16 7 H 0.04 1.27 7.71 -2.39 -0.02 1.25 16 8 C 0.10 2.26 2.69 45.44 0.12 2.38 16 9 H 0.06 1.31 8.05 -2.38 -0.02 1.29 16 10 C -0.13 -2.90 5.06 31.82 0.16 -2.74 16 11 C 0.03 0.85 5.83 86.83 0.51 1.35 16 12 N -0.52 -16.24 4.65 -861.10 -4.01 -20.25 16 13 C 0.06 2.27 4.66 86.31 0.40 2.68 16 14 C -0.08 -3.70 5.21 30.60 0.16 -3.54 16 15 C 0.03 1.45 4.97 29.85 0.15 1.60 16 16 C -0.54 -32.05 9.11 25.60 0.23 -31.82 16 17 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 18 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 19 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 20 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.08 0.94 8.04 -2.39 -0.02 0.92 16 26 H 0.03 0.50 6.33 -2.38 -0.02 0.48 16 27 H 0.03 0.56 8.11 -2.39 -0.02 0.54 16 28 H 0.09 1.28 8.09 -2.39 -0.02 1.27 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.65 7.93 -2.39 -0.02 1.63 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.58 7.22 -2.38 -0.02 1.56 16 34 H 0.09 1.64 8.00 -2.39 -0.02 1.62 16 35 H 0.08 2.24 7.81 -2.39 -0.02 2.22 16 36 H 0.04 1.22 7.84 -2.39 -0.02 1.20 16 37 H 0.03 0.97 7.89 -2.39 -0.02 0.95 16 38 H 0.06 2.41 8.11 -2.39 -0.02 2.39 16 39 H 0.05 2.07 7.28 -2.39 -0.02 2.05 16 40 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 41 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 43 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -64.99 326.63 -0.72 -65.71 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.93 Total: 8.76 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 4.27 Total: -28.82 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -7.94 Total: -92.74 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -64.99 -0.72 -65.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720354116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.090 kcal (2) G-P(sol) polarization free energy of solvation -64.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds