Wall clock time and date at job start Mon Mar 30 2020 04:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99810 * 2 1 4 4 C 1.52995 * 109.47202 * 67.45474 * 3 2 1 5 5 C 1.50699 * 115.55218 * 54.32377 * 4 3 2 6 6 H 1.07997 * 120.00639 * 219.81836 * 5 4 3 7 7 C 1.37879 * 119.99656 * 39.81956 * 5 4 3 8 8 N 1.31519 * 120.00200 * 11.55819 * 7 5 4 9 9 Si 1.86799 * 119.99914 * 191.55288 * 7 5 4 10 10 H 1.48500 * 109.47276 * 270.00117 * 9 7 5 11 11 H 1.48503 * 109.47240 * 30.00315 * 9 7 5 12 12 H 1.48504 * 109.47021 * 150.00073 * 9 7 5 13 13 C 1.53002 * 117.51921 * 200.02557 * 4 3 2 14 14 C 1.53002 * 117.50130 * 268.65789 * 4 3 2 15 15 C 1.46898 * 110.99753 * 236.04635 * 2 1 3 16 16 C 1.53009 * 110.01304 * 185.97429 * 15 2 1 17 17 N 1.46903 * 109.47164 * 59.99974 * 16 15 2 18 18 C 1.54266 * 110.03539 * 64.58772 * 15 2 1 19 19 C 1.54967 * 104.15917 * 217.13467 * 18 15 2 20 20 C 1.54896 * 102.77653 * 37.88459 * 19 18 15 21 21 C 1.53872 * 110.03228 * 307.36331 * 15 2 1 22 22 H 1.08994 * 109.46858 * 65.90787 * 1 2 3 23 23 H 1.08998 * 109.46796 * 185.90366 * 1 2 3 24 24 H 1.08994 * 109.47107 * 305.90314 * 1 2 3 25 25 H 1.08999 * 109.47163 * 307.45711 * 3 2 1 26 26 H 1.08996 * 109.47235 * 187.45460 * 3 2 1 27 27 H 0.96996 * 119.99825 * 174.81400 * 8 7 5 28 28 H 1.09000 * 117.50021 * 214.97188 * 13 4 3 29 29 H 1.08997 * 117.49684 * 359.97438 * 13 4 3 30 30 H 1.08999 * 117.49489 * 359.97295 * 14 4 3 31 31 H 1.08995 * 117.50626 * 144.99748 * 14 4 3 32 32 H 1.09000 * 109.46826 * 179.97438 * 16 15 2 33 33 H 1.08994 * 109.46971 * 300.00181 * 16 15 2 34 34 H 1.00907 * 110.99756 * 56.04140 * 17 16 15 35 35 H 1.00900 * 111.00156 * 179.97438 * 17 16 15 36 36 H 1.09007 * 110.48247 * 335.78017 * 18 15 2 37 37 H 1.08994 * 110.49005 * 98.42209 * 18 15 2 38 38 H 1.08999 * 110.71950 * 279.57244 * 19 18 15 39 39 H 1.08999 * 110.92225 * 156.29400 * 19 18 15 40 40 H 1.08993 * 110.48204 * 203.40502 * 20 19 18 41 41 H 1.08996 * 110.48123 * 80.76265 * 20 19 18 42 42 H 1.09005 * 110.03069 * 238.57138 * 21 15 2 43 43 H 1.08994 * 110.03449 * 0.02562 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6619 2.0458 1.3322 5 6 2.1100 1.3051 2.5658 6 1 1.4713 1.2691 3.4359 7 6 3.3354 0.6735 2.5835 8 7 4.2065 0.9011 1.6248 9 14 3.7586 -0.5054 3.9694 10 1 4.4070 0.2435 5.0757 11 1 2.5167 -1.1489 4.4684 12 1 4.6884 -1.5480 3.4657 13 6 1.6899 3.5749 1.3771 14 6 0.3525 2.8327 1.4174 15 6 1.9954 -0.7660 -1.1376 16 6 3.5180 -0.8770 -1.0345 17 7 3.8756 -1.5610 0.2154 18 6 1.6042 -0.0802 -2.4629 19 6 1.3108 -1.2576 -3.4268 20 6 0.6119 -2.2883 -2.5057 21 6 1.3653 -2.1695 -1.1648 22 1 -0.3633 0.4195 -0.9381 23 1 -0.3633 -1.0222 0.1057 24 1 -0.3633 0.6026 0.8324 25 1 1.5422 1.9346 -0.8158 26 1 3.0769 1.3455 -0.1333 27 1 5.0955 0.5164 1.6759 28 1 2.0325 4.0451 2.2989 29 1 1.9465 4.1007 0.4575 30 1 -0.2710 2.8704 0.5242 31 1 -0.1848 2.8148 2.3656 32 1 3.8989 -1.4469 -1.8820 33 1 3.9563 0.1209 -1.0408 34 1 3.4284 -2.4636 0.2743 35 1 4.8768 -1.6472 0.3068 36 1 0.7128 0.5324 -2.3267 37 1 2.4300 0.5243 -2.8380 38 1 2.2375 -1.6659 -3.8301 39 1 0.6455 -0.9452 -4.2317 40 1 0.7138 -3.2942 -2.9127 41 1 -0.4398 -2.0328 -2.3764 42 1 2.1442 -2.9297 -1.1055 43 1 0.6685 -2.2821 -0.3342 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725010455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:38 Heat of formation + Delta-G solvation = 44.811883 kcal Electronic energy + Delta-G solvation = -20976.265829 eV Core-core repulsion = 18250.594714 eV Total energy + Delta-G solvation = -2725.671115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.44199 -36.46723 -33.55030 -32.94539 -31.61860 -28.76252 -27.44434 -26.36978 -24.98334 -22.95165 -22.60242 -20.97184 -20.49537 -18.64316 -17.64869 -15.98300 -15.77651 -15.30366 -14.66562 -14.35316 -13.84134 -13.69643 -13.45005 -13.10959 -12.73095 -12.45349 -12.22855 -11.77581 -11.39181 -11.19451 -10.90223 -10.85487 -10.76142 -10.66524 -10.64150 -10.38693 -10.31327 -10.23918 -10.19986 -9.90026 -9.50938 -9.00195 -8.70626 -8.30433 -7.69202 -7.42199 -6.85634 -5.61108 -3.55866 3.56129 3.63803 3.68651 4.72218 4.78679 4.91626 5.03078 5.24266 5.46518 5.48897 5.70928 5.75616 5.82950 5.88879 5.92432 5.94043 6.08758 6.12272 6.20612 6.22565 6.28440 6.30060 6.39447 6.48874 6.53762 6.55115 6.71512 6.73016 6.83352 6.88679 6.92694 7.03341 7.13540 7.40689 7.54272 7.84897 8.08369 8.32790 8.36212 8.43487 8.51553 8.85944 9.31363 10.03501 11.45861 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020160 B = 0.010424 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.587489 B = 2685.459901 C = 3421.189248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.470 5.470 3 C 0.103 3.897 4 C 0.081 3.919 5 C -0.492 4.492 6 H 0.045 0.955 7 C 0.115 3.885 8 N -0.848 5.848 9 Si 0.896 3.104 10 H -0.300 1.300 11 H -0.283 1.283 12 H -0.288 1.288 13 C -0.210 4.210 14 C -0.223 4.223 15 C 0.118 3.882 16 C 0.097 3.903 17 N -0.801 5.801 18 C -0.156 4.156 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.116 4.116 22 H 0.002 0.998 23 H 0.050 0.950 24 H 0.074 0.926 25 H -0.021 1.021 26 H 0.117 0.883 27 H 0.253 0.747 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.070 0.930 32 H -0.001 1.001 33 H 0.081 0.919 34 H 0.320 0.680 35 H 0.326 0.674 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.877 -5.430 -8.956 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.191 5.191 3 C -0.024 4.024 4 C 0.080 3.920 5 C -0.529 4.529 6 H 0.063 0.937 7 C -0.091 4.091 8 N -0.483 5.483 9 Si 0.726 3.274 10 H -0.228 1.228 11 H -0.209 1.209 12 H -0.214 1.214 13 C -0.249 4.249 14 C -0.260 4.260 15 C 0.027 3.973 16 C -0.035 4.035 17 N -0.329 5.329 18 C -0.195 4.195 19 C -0.158 4.158 20 C -0.162 4.162 21 C -0.154 4.154 22 H 0.021 0.979 23 H 0.069 0.931 24 H 0.093 0.907 25 H -0.003 1.003 26 H 0.135 0.865 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.017 0.983 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.885 -5.160 -8.244 10.144 hybrid contribution 0.229 -0.834 -0.667 1.092 sum -2.656 -5.994 -8.910 11.062 Atomic orbital electron populations 1.22498 0.90424 1.00464 0.99269 1.61851 1.04416 1.14864 1.37983 1.21739 1.02553 0.85132 0.92984 1.18863 0.90935 0.87132 0.95025 1.20039 1.02820 1.33174 0.96869 0.93676 1.24419 0.95882 0.94228 0.94609 1.69679 1.04279 1.42677 1.31675 0.86619 0.77533 0.81748 0.81481 1.22817 1.20906 1.21367 1.22957 1.01245 1.01038 0.99619 1.22922 0.91648 1.12064 0.99368 1.21661 0.94690 0.92853 0.88112 1.21651 0.93617 0.99435 0.88776 1.58283 1.12168 1.24827 1.37610 1.23107 1.01436 0.97904 0.97102 1.22429 0.99729 0.96376 0.97279 1.22368 0.99376 0.98378 0.96070 1.22294 0.99460 0.96504 0.97166 0.97933 0.93115 0.90718 1.00341 0.86507 0.93699 0.90710 0.92503 0.92309 0.91177 0.98315 0.90109 0.86801 0.86184 0.91385 0.92071 0.92073 0.92506 0.92463 0.92093 0.92513 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 8.66 60.07 0.52 0.94 16 2 N -0.47 -9.68 4.11 -225.87 -0.93 -10.61 16 3 C 0.10 2.35 3.52 -3.83 -0.01 2.34 16 4 C 0.08 2.01 1.37 -155.66 -0.21 1.80 16 5 C -0.49 -13.49 8.68 -34.44 -0.30 -13.79 16 6 H 0.05 1.29 7.84 -52.49 -0.41 0.88 16 7 C 0.11 3.05 5.24 -17.82 -0.09 2.96 16 8 N -0.85 -22.02 9.85 55.43 0.55 -21.48 16 9 Si 0.90 22.00 29.56 -169.99 -5.02 16.98 16 10 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 C -0.21 -4.97 9.96 -26.73 -0.27 -5.24 16 14 C -0.22 -5.03 8.21 -26.73 -0.22 -5.25 16 15 C 0.12 2.04 0.37 -130.48 -0.05 2.00 16 16 C 0.10 1.72 5.21 -3.82 -0.02 1.70 16 17 N -0.80 -14.80 8.28 -10.36 -0.09 -14.89 16 18 C -0.16 -2.46 4.75 -25.03 -0.12 -2.58 16 19 C -0.12 -1.57 6.91 -24.69 -0.17 -1.74 16 20 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 21 C -0.12 -1.77 5.11 -25.61 -0.13 -1.90 16 22 H 0.00 0.05 6.14 -51.93 -0.32 -0.27 16 23 H 0.05 0.90 5.99 -51.93 -0.31 0.59 16 24 H 0.07 1.56 5.83 -51.93 -0.30 1.26 16 25 H -0.02 -0.48 7.20 -51.93 -0.37 -0.86 16 26 H 0.12 2.91 3.89 -51.93 -0.20 2.70 16 27 H 0.25 6.41 8.32 -40.82 -0.34 6.07 16 28 H 0.07 1.81 8.14 -51.93 -0.42 1.38 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 31 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 33 H 0.08 1.65 6.27 -51.93 -0.33 1.33 16 34 H 0.32 5.48 7.29 -39.29 -0.29 5.19 16 35 H 0.33 5.73 9.08 -39.29 -0.36 5.38 16 36 H 0.07 1.15 5.60 -51.93 -0.29 0.86 16 37 H 0.06 0.98 7.84 -51.93 -0.41 0.57 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.82 6.56 -51.93 -0.34 0.48 16 43 H 0.08 1.30 5.84 -51.93 -0.30 0.99 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -26.94 314.85 -9.16 -36.10 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.17 Total: 9.73 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -1.24 Total: -20.57 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.47 Total: -46.98 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.94 -9.16 -36.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725010455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.910 kcal (2) G-P(sol) polarization free energy of solvation -26.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds