Wall clock time and date at job start Mon Mar 30 2020 04:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99810 * 2 1 4 4 C 1.52995 * 109.47202 * 67.45474 * 3 2 1 5 5 C 1.50699 * 115.55218 * 54.32377 * 4 3 2 6 6 H 1.07997 * 120.00639 * 219.81836 * 5 4 3 7 7 C 1.37879 * 119.99656 * 39.81956 * 5 4 3 8 8 N 1.31519 * 120.00200 * 11.55819 * 7 5 4 9 9 Si 1.86799 * 119.99914 * 191.55288 * 7 5 4 10 10 H 1.48500 * 109.47276 * 270.00117 * 9 7 5 11 11 H 1.48503 * 109.47240 * 30.00315 * 9 7 5 12 12 H 1.48504 * 109.47021 * 150.00073 * 9 7 5 13 13 C 1.53002 * 117.51921 * 200.02557 * 4 3 2 14 14 C 1.53002 * 117.50130 * 268.65789 * 4 3 2 15 15 C 1.46898 * 110.99753 * 236.04635 * 2 1 3 16 16 C 1.53009 * 110.01304 * 185.97429 * 15 2 1 17 17 N 1.46903 * 109.47164 * 59.99974 * 16 15 2 18 18 C 1.54266 * 110.03539 * 64.58772 * 15 2 1 19 19 C 1.54967 * 104.15917 * 217.13467 * 18 15 2 20 20 C 1.54896 * 102.77653 * 37.88459 * 19 18 15 21 21 C 1.53872 * 110.03228 * 307.36331 * 15 2 1 22 22 H 1.08994 * 109.46858 * 65.90787 * 1 2 3 23 23 H 1.08998 * 109.46796 * 185.90366 * 1 2 3 24 24 H 1.08994 * 109.47107 * 305.90314 * 1 2 3 25 25 H 1.08999 * 109.47163 * 307.45711 * 3 2 1 26 26 H 1.08996 * 109.47235 * 187.45460 * 3 2 1 27 27 H 0.96996 * 119.99825 * 174.81400 * 8 7 5 28 28 H 1.09000 * 117.50021 * 214.97188 * 13 4 3 29 29 H 1.08997 * 117.49684 * 359.97438 * 13 4 3 30 30 H 1.08999 * 117.49489 * 359.97295 * 14 4 3 31 31 H 1.08995 * 117.50626 * 144.99748 * 14 4 3 32 32 H 1.09000 * 109.46826 * 179.97438 * 16 15 2 33 33 H 1.08994 * 109.46971 * 300.00181 * 16 15 2 34 34 H 1.00907 * 110.99756 * 56.04140 * 17 16 15 35 35 H 1.00900 * 111.00156 * 179.97438 * 17 16 15 36 36 H 1.09007 * 110.48247 * 335.78017 * 18 15 2 37 37 H 1.08994 * 110.49005 * 98.42209 * 18 15 2 38 38 H 1.08999 * 110.71950 * 279.57244 * 19 18 15 39 39 H 1.08999 * 110.92225 * 156.29400 * 19 18 15 40 40 H 1.08993 * 110.48204 * 203.40502 * 20 19 18 41 41 H 1.08996 * 110.48123 * 80.76265 * 20 19 18 42 42 H 1.09005 * 110.03069 * 238.57138 * 21 15 2 43 43 H 1.08994 * 110.03449 * 0.02562 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6619 2.0458 1.3322 5 6 2.1100 1.3051 2.5658 6 1 1.4713 1.2691 3.4359 7 6 3.3354 0.6735 2.5835 8 7 4.2065 0.9011 1.6248 9 14 3.7586 -0.5054 3.9694 10 1 4.4070 0.2435 5.0757 11 1 2.5167 -1.1489 4.4684 12 1 4.6884 -1.5480 3.4657 13 6 1.6899 3.5749 1.3771 14 6 0.3525 2.8327 1.4174 15 6 1.9954 -0.7660 -1.1376 16 6 3.5180 -0.8770 -1.0345 17 7 3.8756 -1.5610 0.2154 18 6 1.6042 -0.0802 -2.4629 19 6 1.3108 -1.2576 -3.4268 20 6 0.6119 -2.2883 -2.5057 21 6 1.3653 -2.1695 -1.1648 22 1 -0.3633 0.4195 -0.9381 23 1 -0.3633 -1.0222 0.1057 24 1 -0.3633 0.6026 0.8324 25 1 1.5422 1.9346 -0.8158 26 1 3.0769 1.3455 -0.1333 27 1 5.0955 0.5164 1.6759 28 1 2.0325 4.0451 2.2989 29 1 1.9465 4.1007 0.4575 30 1 -0.2710 2.8704 0.5242 31 1 -0.1848 2.8148 2.3656 32 1 3.8989 -1.4469 -1.8820 33 1 3.9563 0.1209 -1.0408 34 1 3.4284 -2.4636 0.2743 35 1 4.8768 -1.6472 0.3068 36 1 0.7128 0.5324 -2.3267 37 1 2.4300 0.5243 -2.8380 38 1 2.2375 -1.6659 -3.8301 39 1 0.6455 -0.9452 -4.2317 40 1 0.7138 -3.2942 -2.9127 41 1 -0.4398 -2.0328 -2.3764 42 1 2.1442 -2.9297 -1.1055 43 1 0.6685 -2.2821 -0.3342 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725010455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:37 Heat of formation + Delta-G solvation = 28.582019 kcal Electronic energy + Delta-G solvation = -20976.969609 eV Core-core repulsion = 18250.594714 eV Total energy + Delta-G solvation = -2726.374895 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.82900 -38.22927 -34.91945 -34.48049 -33.64009 -30.00553 -28.77636 -28.02461 -26.98172 -24.33262 -24.15645 -22.83847 -21.63458 -20.50083 -19.07844 -17.74319 -17.30355 -16.67804 -16.31535 -15.99537 -15.49881 -15.35952 -14.85827 -14.54920 -14.38277 -13.95767 -13.64449 -13.26226 -13.13624 -12.82697 -12.67154 -12.52664 -12.32697 -12.14954 -12.08311 -11.93762 -11.82621 -11.80356 -11.67961 -11.32582 -11.07258 -10.85316 -10.66343 -10.22598 -9.63614 -8.87316 -8.41515 -7.64929 -5.65273 1.56059 1.63265 1.68918 2.74803 3.24352 3.54863 3.73334 3.86305 3.92561 4.03151 4.23838 4.43046 4.47347 4.53478 4.59996 4.63897 4.66496 4.74249 4.78354 4.87615 4.90388 4.93746 4.97179 4.99202 5.06231 5.10123 5.18104 5.22360 5.23334 5.35085 5.44551 5.48924 5.56105 5.59231 5.67891 5.92218 6.30409 6.65721 6.71182 6.91874 6.96835 7.02366 7.24386 7.94551 9.39229 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020160 B = 0.010424 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.587489 B = 2685.459901 C = 3421.189248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.487 5.487 3 C 0.120 3.880 4 C 0.061 3.939 5 C -0.518 4.518 6 H 0.021 0.979 7 C 0.094 3.906 8 N -0.845 5.845 9 Si 0.937 3.063 10 H -0.305 1.305 11 H -0.296 1.296 12 H -0.276 1.276 13 C -0.214 4.214 14 C -0.203 4.203 15 C 0.113 3.887 16 C 0.104 3.896 17 N -0.817 5.817 18 C -0.153 4.153 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.113 4.113 22 H 0.014 0.986 23 H 0.065 0.935 24 H 0.052 0.948 25 H -0.023 1.023 26 H 0.097 0.903 27 H 0.255 0.745 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.050 0.950 34 H 0.328 0.672 35 H 0.329 0.671 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.216 -6.766 -10.510 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.209 5.209 3 C -0.008 4.008 4 C 0.060 3.940 5 C -0.554 4.554 6 H 0.039 0.961 7 C -0.112 4.112 8 N -0.480 5.480 9 Si 0.767 3.233 10 H -0.234 1.234 11 H -0.222 1.222 12 H -0.202 1.202 13 C -0.253 4.253 14 C -0.240 4.240 15 C 0.023 3.977 16 C -0.027 4.027 17 N -0.347 5.347 18 C -0.193 4.193 19 C -0.150 4.150 20 C -0.155 4.155 21 C -0.151 4.151 22 H 0.032 0.968 23 H 0.083 0.917 24 H 0.071 0.929 25 H -0.005 1.005 26 H 0.114 0.886 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.219 -6.501 -9.813 12.204 hybrid contribution 0.353 -0.401 -0.151 0.555 sum -2.866 -6.902 -9.964 12.455 Atomic orbital electron populations 1.22409 0.89724 1.01025 0.98888 1.61748 1.05184 1.13674 1.40258 1.21401 1.01249 0.86439 0.91671 1.18966 0.92522 0.87395 0.95147 1.20089 1.03156 1.34897 0.97296 0.96077 1.24721 0.95756 0.94815 0.95910 1.69745 1.04166 1.42332 1.31711 0.86005 0.76752 0.80662 0.79855 1.23363 1.22237 1.20167 1.22943 1.02161 1.00603 0.99594 1.22850 0.91085 1.10186 0.99883 1.21787 0.94376 0.93774 0.87793 1.21527 0.93913 0.98019 0.89285 1.58241 1.12603 1.25458 1.38364 1.23029 1.00531 0.98697 0.97066 1.22402 1.00607 0.94941 0.97007 1.22337 0.99035 0.99592 0.94489 1.22246 0.99525 0.95099 0.98188 0.96793 0.91686 0.92904 1.00532 0.88568 0.93536 0.91869 0.91372 0.90561 0.91595 0.96159 0.93121 0.85926 0.85852 0.92549 0.92822 0.91111 0.90887 0.90261 0.91874 0.91690 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 8.66 127.69 1.11 2.14 16 2 N -0.49 -19.74 4.11 -868.53 -3.57 -23.31 16 3 C 0.12 5.47 3.52 86.30 0.30 5.78 16 4 C 0.06 3.01 1.37 -52.93 -0.07 2.94 16 5 C -0.52 -28.77 8.68 25.60 0.22 -28.55 16 6 H 0.02 1.24 7.84 -2.91 -0.02 1.21 16 7 C 0.09 5.03 5.24 84.65 0.44 5.47 16 8 N -0.85 -43.86 9.85 21.45 0.21 -43.65 16 9 Si 0.94 45.17 29.56 68.60 2.03 47.20 16 10 H -0.31 -14.93 7.11 99.48 0.71 -14.23 16 11 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 C -0.21 -10.16 9.96 30.60 0.30 -9.86 16 14 C -0.20 -9.10 8.21 30.60 0.25 -8.85 16 15 C 0.11 3.75 0.37 4.25 0.00 3.75 16 16 C 0.10 3.57 5.21 86.31 0.45 4.02 16 17 N -0.82 -29.31 8.28 -186.70 -1.55 -30.86 16 18 C -0.15 -4.57 4.75 31.70 0.15 -4.42 16 19 C -0.11 -2.54 6.91 31.91 0.22 -2.32 16 20 C -0.12 -2.61 6.83 31.67 0.22 -2.39 16 21 C -0.11 -3.15 5.11 31.32 0.16 -2.99 16 22 H 0.01 0.48 6.14 -2.39 -0.01 0.47 16 23 H 0.06 2.21 5.99 -2.39 -0.01 2.20 16 24 H 0.05 2.19 5.83 -2.39 -0.01 2.17 16 25 H -0.02 -1.04 7.20 -2.39 -0.02 -1.06 16 26 H 0.10 4.82 3.89 -2.39 -0.01 4.81 16 27 H 0.25 12.80 8.32 -92.71 -0.77 12.03 16 28 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.08 3.13 8.11 -2.39 -0.02 3.11 16 31 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 2.06 6.27 -2.39 -0.01 2.05 16 34 H 0.33 10.71 7.29 -89.69 -0.65 10.05 16 35 H 0.33 11.24 9.08 -89.69 -0.81 10.42 16 36 H 0.06 1.81 5.60 -2.38 -0.01 1.79 16 37 H 0.05 1.66 7.84 -2.39 -0.02 1.64 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 1.70 6.56 -2.38 -0.02 1.68 16 43 H 0.06 2.01 5.84 -2.39 -0.01 1.99 16 Total: -1.00 -56.72 314.85 0.42 -56.30 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.46 Total: 29.59 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 3.76 Total: -35.27 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -4.90 Total: -97.82 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -56.72 0.42 -56.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725010455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.882 kcal (2) G-P(sol) polarization free energy of solvation -56.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds