Wall clock time and date at job start Mon Mar 30 2020 04:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46820 * 110.99860 * 2 1 4 4 C 1.53969 * 109.05708 * 177.78690 * 3 2 1 5 5 H 1.08994 * 112.74035 * 188.95859 * 4 3 2 6 6 C 1.54712 * 107.21174 * 313.75712 * 4 3 2 7 7 C 1.56021 * 105.11281 * 86.02014 * 6 4 3 8 8 C 1.54706 * 106.31752 * 359.90285 * 7 6 4 9 9 H 1.09005 * 112.85262 * 148.84029 * 8 7 6 10 10 C 1.46821 * 111.00101 * 234.32219 * 2 1 3 11 11 C 1.55296 * 103.42493 * 26.53093 * 8 7 6 12 12 N 1.46898 * 111.13350 * 199.65869 * 11 8 7 13 13 C 1.46896 * 111.00229 * 266.72909 * 12 11 8 14 14 C 1.52999 * 109.47320 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47744 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47446 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00351 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99824 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99982 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99894 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47262 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47264 * 119.99753 * 20 18 16 23 23 H 1.48503 * 109.46985 * 239.99998 * 20 18 16 24 24 H 1.09002 * 109.47401 * 59.99898 * 1 2 3 25 25 H 1.09001 * 109.46874 * 299.99911 * 1 2 3 26 26 H 1.09004 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.53861 * 297.65920 * 3 2 1 28 28 H 1.09001 * 109.54139 * 57.82719 * 3 2 1 29 29 H 1.08999 * 110.11954 * 204.86549 * 6 4 3 30 30 H 1.09000 * 110.12096 * 326.53651 * 6 4 3 31 31 H 1.09001 * 109.96782 * 240.70196 * 7 6 4 32 32 H 1.08994 * 110.12258 * 119.18717 * 7 6 4 33 33 H 1.09004 * 109.53358 * 302.08863 * 10 2 1 34 34 H 1.08998 * 109.53738 * 62.33538 * 10 2 1 35 35 H 1.08998 * 111.09778 * 75.58900 * 11 8 7 36 36 H 1.00902 * 110.99734 * 142.77595 * 12 11 8 37 37 H 1.09003 * 109.47069 * 299.99732 * 13 12 11 38 38 H 1.08998 * 109.47569 * 60.00039 * 13 12 11 39 39 H 1.09005 * 109.47269 * 300.00332 * 14 13 12 40 40 H 1.09002 * 109.47359 * 59.99578 * 14 13 12 41 41 H 1.09005 * 109.46867 * 300.00404 * 15 14 13 42 42 H 1.09002 * 109.47179 * 59.99294 * 15 14 13 43 43 H 0.97006 * 119.99707 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3707 0.0000 4 6 3.5329 1.3189 0.0562 5 1 3.9819 2.2992 0.2155 6 6 3.9168 0.2969 1.1524 7 6 3.9169 -1.0885 0.4348 8 6 3.5329 -0.8149 -1.0386 9 1 3.9925 -1.5179 -1.7334 10 6 1.9952 -0.7994 -1.1134 11 6 3.9969 0.6496 -1.2661 12 7 3.3205 1.2453 -2.4261 13 6 4.1229 1.0804 -3.6454 14 6 3.3879 1.7125 -4.8291 15 6 4.2232 1.5402 -6.0993 16 6 3.4989 2.1622 -7.2652 17 1 2.5389 2.6338 -7.1152 18 6 4.0623 2.1303 -8.5232 19 7 5.2319 1.5575 -8.7055 20 14 3.1647 2.9020 -9.9683 21 1 1.8777 3.4773 -9.5017 22 1 4.0041 3.9772 -10.5554 23 1 2.8986 1.8644 -10.9969 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6806 1.8819 -0.9098 28 1 1.6151 1.9071 0.8695 29 1 4.9093 0.5213 1.5432 30 1 3.1826 0.3173 1.9577 31 1 3.1824 -1.7475 0.8977 32 1 4.9087 -1.5376 0.4868 33 1 1.6163 -1.8189 -1.0411 34 1 1.6806 -0.3585 -2.0593 35 1 5.0800 0.7056 -1.3752 36 1 3.1092 2.2181 -2.2611 37 1 5.0880 1.5698 -3.5143 38 1 4.2771 0.0187 -3.8381 39 1 2.4225 1.2235 -4.9604 40 1 3.2340 2.7742 -4.6362 41 1 5.1887 2.0289 -5.9682 42 1 4.3767 0.4784 -6.2919 43 1 5.6284 1.5354 -9.5906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924942604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:00 Heat of formation + Delta-G solvation = -8.150791 kcal Electronic energy + Delta-G solvation = -19281.816310 eV Core-core repulsion = 16553.848561 eV Total energy + Delta-G solvation = -2727.967749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46952 -35.86290 -34.54644 -33.10561 -31.29693 -30.92932 -28.03301 -26.56260 -24.97581 -24.38950 -22.47478 -22.18633 -20.35196 -19.80143 -18.27959 -16.55641 -16.25052 -15.71048 -15.14042 -14.60940 -14.47222 -14.29408 -13.99636 -13.50177 -13.22339 -12.98379 -12.59381 -12.40103 -12.08692 -11.82792 -11.75450 -11.54401 -11.20700 -11.06428 -10.89567 -10.72274 -10.58234 -10.46032 -10.29560 -10.21431 -10.17398 -9.68123 -9.31924 -9.02612 -8.36292 -8.33498 -7.92974 -5.98809 -4.00806 3.31592 3.38925 3.43423 3.99272 4.35538 4.48117 4.49857 4.67332 4.93451 5.14934 5.28970 5.36605 5.37100 5.38383 5.42398 5.47422 5.52842 5.64611 5.78932 5.81115 5.82739 5.89561 5.96169 6.02080 6.04981 6.10087 6.12398 6.19514 6.32953 6.34915 6.46822 6.72632 6.80417 7.13974 7.15552 7.20355 7.40099 7.63891 7.69974 7.84904 8.01800 8.45178 9.06651 9.63211 11.12684 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036030 B = 0.003974 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.941890 B = 7043.780915 C = 7368.928780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.541 5.541 3 C 0.067 3.933 4 C -0.103 4.103 5 H 0.082 0.918 6 C -0.099 4.099 7 C -0.104 4.104 8 C -0.084 4.084 9 H 0.084 0.916 10 C 0.068 3.932 11 C 0.079 3.921 12 N -0.681 5.681 13 C 0.060 3.940 14 C -0.105 4.105 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.025 0.975 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.336 0.664 37 H 0.023 0.977 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.043 0.957 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.845 -3.178 20.410 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.266 5.266 3 C -0.061 4.061 4 C -0.122 4.122 5 H 0.100 0.900 6 C -0.138 4.138 7 C -0.142 4.142 8 C -0.104 4.104 9 H 0.102 0.898 10 C -0.059 4.059 11 C -0.031 4.031 12 N -0.311 5.311 13 C -0.068 4.068 14 C -0.144 4.144 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.044 0.956 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.155 0.845 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.963 -3.984 20.569 21.531 hybrid contribution 0.079 1.444 -1.539 2.112 sum -4.884 -2.540 19.029 19.810 Atomic orbital electron populations 1.22270 0.87863 1.01587 1.00295 1.61612 1.06730 1.13103 1.45134 1.22142 0.94165 0.89439 1.00380 1.22643 0.95639 0.98614 0.95286 0.89959 1.22336 0.99942 0.94298 0.97188 1.22391 1.00027 0.97082 0.94730 1.22388 0.95562 0.96115 0.96314 0.89789 1.22123 0.94241 0.96570 0.93010 1.22718 0.95963 0.94987 0.89457 1.60665 1.46618 1.21390 1.02461 1.22155 0.94242 1.00918 0.89518 1.21607 0.99581 0.98582 0.94583 1.19065 0.94859 0.97114 0.90536 1.21294 1.04953 1.36403 0.92976 0.92684 1.25031 0.94982 0.95548 0.98960 1.69980 1.16617 1.44489 1.22510 0.86548 0.79854 0.79049 0.82631 1.19749 1.21040 1.21004 0.95622 0.92012 0.91831 0.93541 0.91755 0.93034 0.91149 0.91277 0.93097 0.92108 0.92082 0.93114 0.84528 0.95843 0.91583 0.92766 0.93814 0.96849 0.96610 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.61 60.07 0.58 0.86 16 2 N -0.54 -6.09 3.70 -241.78 -0.89 -6.98 16 3 C 0.07 0.73 4.73 -3.36 -0.02 0.72 16 4 C -0.10 -1.11 3.82 -87.99 -0.34 -1.44 16 5 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.10 -1.00 6.07 -24.21 -0.15 -1.15 16 7 C -0.10 -1.11 5.96 -24.22 -0.14 -1.25 16 8 C -0.08 -1.02 4.12 -88.00 -0.36 -1.39 16 9 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 10 C 0.07 0.84 4.76 -3.36 -0.02 0.83 16 11 C 0.08 1.00 2.94 -65.28 -0.19 0.81 16 12 N -0.68 -9.79 4.02 -104.17 -0.42 -10.21 16 13 C 0.06 1.05 5.55 -3.83 -0.02 1.03 16 14 C -0.11 -2.21 5.41 -26.73 -0.14 -2.35 16 15 C 0.02 0.57 4.97 -27.89 -0.14 0.44 16 16 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 17 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 27 H 0.05 0.57 6.50 -51.93 -0.34 0.23 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.71 7.80 -51.93 -0.41 0.31 16 31 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.06 0.89 7.03 -51.93 -0.37 0.53 16 35 H 0.05 0.68 7.83 -51.93 -0.41 0.28 16 36 H 0.34 4.65 7.56 -39.29 -0.30 4.35 16 37 H 0.02 0.41 8.09 -51.93 -0.42 -0.01 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -29.60 326.95 -10.12 -39.72 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -8.09 Total: -1.14 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -1.35 Total: -16.64 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -0.58 Total: -43.77 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.60 -10.12 -39.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924942604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.567 kcal (2) G-P(sol) polarization free energy of solvation -29.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds