Wall clock time and date at job start Mon Mar 30 2020 04:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46820 * 110.99860 * 2 1 4 4 C 1.53969 * 109.05708 * 177.78690 * 3 2 1 5 5 H 1.08994 * 112.74035 * 188.95859 * 4 3 2 6 6 C 1.54712 * 107.21174 * 313.75712 * 4 3 2 7 7 C 1.56021 * 105.11281 * 86.02014 * 6 4 3 8 8 C 1.54706 * 106.31752 * 359.90285 * 7 6 4 9 9 H 1.09005 * 112.85262 * 148.84029 * 8 7 6 10 10 C 1.46821 * 111.00101 * 234.32219 * 2 1 3 11 11 C 1.55296 * 103.42493 * 26.53093 * 8 7 6 12 12 N 1.46898 * 111.13350 * 199.65869 * 11 8 7 13 13 C 1.46896 * 111.00229 * 266.72909 * 12 11 8 14 14 C 1.52999 * 109.47320 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47744 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47446 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00351 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99824 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99982 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99894 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47262 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47264 * 119.99753 * 20 18 16 23 23 H 1.48503 * 109.46985 * 239.99998 * 20 18 16 24 24 H 1.09002 * 109.47401 * 59.99898 * 1 2 3 25 25 H 1.09001 * 109.46874 * 299.99911 * 1 2 3 26 26 H 1.09004 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.53861 * 297.65920 * 3 2 1 28 28 H 1.09001 * 109.54139 * 57.82719 * 3 2 1 29 29 H 1.08999 * 110.11954 * 204.86549 * 6 4 3 30 30 H 1.09000 * 110.12096 * 326.53651 * 6 4 3 31 31 H 1.09001 * 109.96782 * 240.70196 * 7 6 4 32 32 H 1.08994 * 110.12258 * 119.18717 * 7 6 4 33 33 H 1.09004 * 109.53358 * 302.08863 * 10 2 1 34 34 H 1.08998 * 109.53738 * 62.33538 * 10 2 1 35 35 H 1.08998 * 111.09778 * 75.58900 * 11 8 7 36 36 H 1.00902 * 110.99734 * 142.77595 * 12 11 8 37 37 H 1.09003 * 109.47069 * 299.99732 * 13 12 11 38 38 H 1.08998 * 109.47569 * 60.00039 * 13 12 11 39 39 H 1.09005 * 109.47269 * 300.00332 * 14 13 12 40 40 H 1.09002 * 109.47359 * 59.99578 * 14 13 12 41 41 H 1.09005 * 109.46867 * 300.00404 * 15 14 13 42 42 H 1.09002 * 109.47179 * 59.99294 * 15 14 13 43 43 H 0.97006 * 119.99707 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3707 0.0000 4 6 3.5329 1.3189 0.0562 5 1 3.9819 2.2992 0.2155 6 6 3.9168 0.2969 1.1524 7 6 3.9169 -1.0885 0.4348 8 6 3.5329 -0.8149 -1.0386 9 1 3.9925 -1.5179 -1.7334 10 6 1.9952 -0.7994 -1.1134 11 6 3.9969 0.6496 -1.2661 12 7 3.3205 1.2453 -2.4261 13 6 4.1229 1.0804 -3.6454 14 6 3.3879 1.7125 -4.8291 15 6 4.2232 1.5402 -6.0993 16 6 3.4989 2.1622 -7.2652 17 1 2.5389 2.6338 -7.1152 18 6 4.0623 2.1303 -8.5232 19 7 5.2319 1.5575 -8.7055 20 14 3.1647 2.9020 -9.9683 21 1 1.8777 3.4773 -9.5017 22 1 4.0041 3.9772 -10.5554 23 1 2.8986 1.8644 -10.9969 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6806 1.8819 -0.9098 28 1 1.6151 1.9071 0.8695 29 1 4.9093 0.5213 1.5432 30 1 3.1826 0.3173 1.9577 31 1 3.1824 -1.7475 0.8977 32 1 4.9087 -1.5376 0.4868 33 1 1.6163 -1.8189 -1.0411 34 1 1.6806 -0.3585 -2.0593 35 1 5.0800 0.7056 -1.3752 36 1 3.1092 2.2181 -2.2611 37 1 5.0880 1.5698 -3.5143 38 1 4.2771 0.0187 -3.8381 39 1 2.4225 1.2235 -4.9604 40 1 3.2340 2.7742 -4.6362 41 1 5.1887 2.0289 -5.9682 42 1 4.3767 0.4784 -6.2919 43 1 5.6284 1.5354 -9.5906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924942604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:00 Heat of formation + Delta-G solvation = -25.391766 kcal Electronic energy + Delta-G solvation = -19282.563935 eV Core-core repulsion = 16553.848561 eV Total energy + Delta-G solvation = -2728.715374 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41563 -37.26576 -35.74033 -34.89520 -32.74587 -32.16627 -29.24520 -27.92972 -26.36582 -25.27586 -24.15471 -23.19576 -22.00384 -20.83754 -19.28438 -18.50090 -17.42444 -16.81626 -16.56872 -16.36957 -15.60690 -15.35060 -15.26803 -14.70058 -14.36312 -14.04709 -13.93636 -13.91866 -13.34266 -13.25198 -13.13443 -12.77615 -12.55897 -12.48536 -12.46854 -12.10006 -11.89464 -11.68133 -11.55873 -11.40914 -11.25828 -11.19994 -11.06873 -10.97637 -10.57942 -9.46130 -8.96103 -8.22116 -6.33376 1.38597 1.38986 1.52574 2.39427 3.08533 3.11045 3.23277 3.55913 3.76189 3.99230 4.20216 4.27174 4.34649 4.41881 4.46341 4.53028 4.54847 4.62356 4.68851 4.70131 4.74371 4.92745 4.95140 5.04521 5.05338 5.06826 5.11804 5.16547 5.20072 5.21030 5.24456 5.27997 5.41732 5.50319 5.62982 5.72214 5.83453 6.07369 6.24445 6.28240 6.31290 6.46812 6.83604 7.36100 8.90098 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036030 B = 0.003974 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.941890 B = 7043.780915 C = 7368.928780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.540 5.540 3 C 0.067 3.933 4 C -0.097 4.097 5 H 0.095 0.905 6 C -0.094 4.094 7 C -0.099 4.099 8 C -0.089 4.089 9 H 0.073 0.927 10 C 0.073 3.927 11 C 0.075 3.925 12 N -0.676 5.676 13 C 0.076 3.924 14 C -0.089 4.089 15 C 0.026 3.974 16 C -0.543 4.543 17 H 0.058 0.942 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.277 1.277 24 H 0.014 0.986 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.044 0.956 36 H 0.342 0.658 37 H 0.020 0.980 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.049 0.951 41 H -0.010 1.010 42 H -0.010 1.010 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.786 -2.525 21.606 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.264 5.264 3 C -0.061 4.061 4 C -0.116 4.116 5 H 0.113 0.887 6 C -0.132 4.132 7 C -0.137 4.137 8 C -0.108 4.108 9 H 0.092 0.908 10 C -0.055 4.055 11 C -0.035 4.035 12 N -0.307 5.307 13 C -0.053 4.053 14 C -0.127 4.127 15 C -0.012 4.012 16 C -0.581 4.581 17 H 0.077 0.923 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.186 1.186 22 H -0.202 1.202 23 H -0.203 1.203 24 H 0.033 0.967 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.161 0.839 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.009 0.991 42 H 0.008 0.992 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.915 -3.329 21.788 22.821 hybrid contribution 0.381 1.210 -1.892 2.278 sum -5.534 -2.118 19.896 20.760 Atomic orbital electron populations 1.22319 0.87028 1.02128 1.00498 1.61660 1.07492 1.13158 1.44122 1.22179 0.94316 0.89232 1.00412 1.22657 0.95508 0.99304 0.94096 0.88720 1.22312 1.00731 0.93350 0.96804 1.22343 1.00340 0.97648 0.93349 1.22410 0.95441 0.95580 0.97402 0.90829 1.22024 0.94399 0.96841 0.92250 1.22788 0.95462 0.95585 0.89656 1.60589 1.46073 1.21933 1.02083 1.21818 0.93901 0.99830 0.89739 1.21341 0.98563 0.99196 0.93605 1.18966 0.94544 0.94901 0.92802 1.21714 1.05364 1.36814 0.94196 0.92349 1.25997 0.95776 0.95894 1.02187 1.70107 1.18221 1.45557 1.23535 0.85382 0.78819 0.78214 0.78533 1.18649 1.20202 1.20285 0.96704 0.90455 0.91209 0.94935 0.90142 0.91947 0.90655 0.91224 0.92480 0.91674 0.94701 0.93756 0.83925 0.96137 0.92483 0.93242 0.93238 0.99134 0.99171 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.61 127.69 1.23 1.75 16 2 N -0.54 -11.26 3.70 -918.87 -3.40 -14.66 16 3 C 0.07 1.33 4.73 86.65 0.41 1.74 16 4 C -0.10 -1.88 3.82 -9.09 -0.03 -1.91 16 5 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 6 C -0.09 -1.65 6.07 32.23 0.20 -1.45 16 7 C -0.10 -1.92 5.96 32.22 0.19 -1.73 16 8 C -0.09 -2.10 4.12 -9.10 -0.04 -2.13 16 9 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 10 C 0.07 1.76 4.76 86.64 0.41 2.17 16 11 C 0.08 1.83 2.94 46.49 0.14 1.97 16 12 N -0.68 -19.20 4.02 -483.48 -1.95 -21.15 16 13 C 0.08 2.69 5.55 86.30 0.48 3.17 16 14 C -0.09 -3.78 5.41 30.59 0.17 -3.62 16 15 C 0.03 1.38 4.97 29.85 0.15 1.53 16 16 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 18 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 19 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 20 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 1.18 8.11 -2.38 -0.02 1.16 16 27 H 0.03 0.75 6.50 -2.39 -0.02 0.73 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.29 7.80 -2.39 -0.02 1.27 16 31 H 0.07 1.36 7.79 -2.39 -0.02 1.34 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.49 8.13 -2.38 -0.02 1.47 16 34 H 0.03 1.02 7.03 -2.39 -0.02 1.01 16 35 H 0.04 1.16 7.83 -2.39 -0.02 1.14 16 36 H 0.34 9.15 7.56 -89.69 -0.68 8.47 16 37 H 0.02 0.73 8.09 -2.39 -0.02 0.71 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 41 H -0.01 -0.57 8.14 -2.38 -0.02 -0.58 16 42 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 43 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -63.40 326.95 1.23 -62.17 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.27 Total: 13.76 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 3.99 Total: -29.60 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -5.06 Total: -93.30 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -63.40 1.23 -62.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924942604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.780 kcal (2) G-P(sol) polarization free energy of solvation -63.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds