Wall clock time and date at job start Mon Mar 30 2020 04:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.39999 * 119.51808 * 2 1 4 4 C 1.30774 * 119.81488 * 180.27114 * 3 2 1 5 5 N 1.39505 * 120.53246 * 179.73028 * 4 3 2 6 6 C 1.46497 * 119.99811 * 0.02562 * 5 4 3 7 7 C 1.52997 * 109.47395 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47355 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00043 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99988 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00355 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 120.00143 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47267 * 90.00015 * 12 10 8 14 14 H 1.48498 * 109.47417 * 210.00265 * 12 10 8 15 15 H 1.48503 * 109.47141 * 330.00098 * 12 10 8 16 16 C 1.47232 * 118.93701 * 359.74952 * 4 3 2 17 17 O 1.21674 * 120.45435 * 179.97438 * 16 4 3 18 18 N 1.34922 * 119.08542 * 0.02562 * 16 4 3 19 19 C 1.46505 * 119.96576 * 180.02562 * 18 16 4 20 20 C 1.34458 * 119.52245 * 179.76391 * 2 1 3 21 21 O 1.21633 * 119.43079 * 0.02562 * 20 2 1 22 22 H 1.09003 * 109.47317 * 270.23200 * 1 2 3 23 23 H 1.08998 * 109.47448 * 30.23293 * 1 2 3 24 24 H 1.09002 * 109.46728 * 150.23581 * 1 2 3 25 25 H 0.97000 * 120.00344 * 180.02562 * 5 4 3 26 26 H 1.09002 * 109.47064 * 299.99527 * 6 5 4 27 27 H 1.09004 * 109.47550 * 59.99623 * 6 5 4 28 28 H 1.09005 * 109.47126 * 299.99717 * 7 6 5 29 29 H 1.08999 * 109.47093 * 59.99811 * 7 6 5 30 30 H 0.96998 * 120.00090 * 179.97438 * 11 10 8 31 31 H 1.08995 * 109.46659 * 179.97438 * 19 18 16 32 32 H 1.08997 * 109.46358 * 299.97462 * 19 18 16 33 33 H 1.08993 * 109.46967 * 59.97021 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1547 1.2183 0.0000 4 6 3.4624 1.2251 -0.0054 5 7 4.1649 2.4303 -0.0111 6 6 3.4376 3.7020 -0.0106 7 6 4.4364 4.8609 -0.0182 8 6 3.6882 6.1691 -0.0170 9 1 2.6083 6.1735 -0.0118 10 6 4.3825 7.3603 -0.0237 11 7 3.7296 8.5019 -0.0231 12 14 6.2504 7.3527 -0.0334 13 1 6.7382 7.3472 -1.4360 14 1 6.7540 8.5649 0.6610 15 1 6.7442 6.1400 0.6672 16 6 4.1815 -0.0597 -0.0057 17 8 5.3979 -0.0857 -0.0111 18 7 3.4729 -1.2079 -0.0010 19 6 4.1687 -2.4972 -0.0006 20 6 2.1275 -1.1700 0.0048 21 8 1.5002 -2.2121 0.0086 22 1 -0.3634 0.0042 1.0277 23 1 -0.3634 0.8879 -0.5174 24 1 -0.3633 -0.8921 -0.5102 25 1 5.1349 2.4264 -0.0154 26 1 2.8072 3.7604 -0.8979 27 1 2.8150 3.7643 0.8820 28 1 5.0672 4.8028 0.8689 29 1 5.0585 4.7985 -0.9110 30 1 4.2180 9.3400 -0.0274 31 1 3.4368 -3.3049 0.0039 32 1 4.7901 -2.5748 -0.8928 33 1 4.7967 -2.5708 0.8871 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309523607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:37 Heat of formation + Delta-G solvation = 1.351107 kcal Electronic energy + Delta-G solvation = -18548.736652 eV Core-core repulsion = 15418.662926 eV Total energy + Delta-G solvation = -3130.073727 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.06190 -39.30904 -37.65187 -35.93286 -35.50545 -33.30578 -31.79340 -29.72536 -28.65091 -26.88857 -25.12911 -23.80756 -22.73818 -21.16670 -19.68065 -18.24350 -17.34562 -17.32830 -16.80703 -15.97954 -15.63256 -15.02099 -14.93017 -14.62429 -14.23716 -14.10517 -13.72943 -13.08873 -12.86882 -12.73225 -12.61739 -12.36219 -12.28847 -11.54859 -11.26066 -10.81232 -10.54246 -10.26096 -10.11916 -10.03741 -9.88449 -9.64801 -9.39675 -8.65382 -7.75989 -6.15279 -4.16060 0.88322 1.63693 1.86628 2.24553 3.02206 3.15431 3.24187 3.32654 3.33765 4.29540 4.35051 4.71134 4.97460 5.04813 5.11898 5.18118 5.31890 5.39059 5.46364 5.59287 5.82102 5.94172 6.08417 6.19922 6.45189 6.77504 7.01168 7.15505 7.21599 7.42769 7.60434 7.66532 8.06908 8.38488 8.87952 9.44820 10.97424 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.034812 B = 0.004695 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.132488 B = 5962.588652 C = 6735.665619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.434 5.434 3 N -0.286 5.286 4 C 0.323 3.677 5 N -0.674 5.674 6 C 0.139 3.861 7 C -0.024 4.024 8 C -0.523 4.523 9 H 0.077 0.923 10 C 0.071 3.929 11 N -0.897 5.897 12 Si 0.880 3.120 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.265 1.265 16 C 0.528 3.472 17 O -0.484 6.484 18 N -0.554 5.554 19 C 0.080 3.920 20 C 0.669 3.331 21 O -0.556 6.556 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.418 0.582 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.024 0.976 29 H 0.020 0.980 30 H 0.265 0.735 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 -18.821 -0.057 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.257 5.257 3 N -0.121 5.121 4 C 0.042 3.958 5 N -0.316 5.316 6 C 0.017 3.983 7 C -0.062 4.062 8 C -0.561 4.561 9 H 0.095 0.905 10 C -0.131 4.131 11 N -0.535 5.535 12 Si 0.707 3.293 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.190 1.190 16 C 0.313 3.687 17 O -0.352 6.352 18 N -0.300 5.300 19 C -0.061 4.061 20 C 0.370 3.630 21 O -0.429 6.429 22 H 0.086 0.914 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.256 0.744 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.156 -18.667 -0.054 18.791 hybrid contribution 1.986 -0.343 0.003 2.015 sum -0.170 -19.010 -0.051 19.011 Atomic orbital electron populations 1.21684 0.72593 1.04403 1.03247 1.48111 1.07906 0.99143 1.70531 1.75463 1.05246 1.04101 1.27244 1.21717 0.89130 0.87588 0.97398 1.44942 1.08972 1.01175 1.76506 1.21698 0.95539 0.79150 1.01913 1.19824 0.95485 0.93682 0.97220 1.20847 0.95223 0.88056 1.52008 0.90486 1.24973 0.98470 0.95402 0.94259 1.69893 1.35935 0.97497 1.50203 0.86785 0.86039 0.77871 0.78614 1.20170 1.21243 1.18990 1.19268 0.88062 0.84290 0.77097 1.90883 1.12407 1.86947 1.44936 1.46273 1.06682 1.09612 1.67432 1.21956 0.97927 0.82450 1.03814 1.16472 0.81422 0.85493 0.79633 1.90970 1.65079 1.30569 1.56272 0.91409 0.89014 0.89250 0.74396 0.91450 0.91421 0.95749 0.96180 0.92484 0.87739 0.90188 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.22 10.68 59.84 0.64 1.86 16 2 N -0.43 -5.89 3.90 -72.20 -0.28 -6.17 16 3 N -0.29 -4.34 10.85 32.75 0.36 -3.99 16 4 C 0.32 4.91 7.84 -152.57 -1.20 3.71 16 5 N -0.67 -10.63 5.73 -58.24 -0.33 -10.97 16 6 C 0.14 2.53 5.69 -4.04 -0.02 2.50 16 7 C -0.02 -0.53 4.16 -27.88 -0.12 -0.64 16 8 C -0.52 -13.95 9.66 -34.44 -0.33 -14.29 16 9 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 10 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 11 N -0.90 -26.57 13.96 55.43 0.77 -25.80 16 12 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 16 C 0.53 7.61 7.64 -12.54 -0.10 7.52 16 17 O -0.48 -7.50 16.64 5.21 0.09 -7.41 16 18 N -0.55 -7.24 2.96 -129.49 -0.38 -7.63 16 19 C 0.08 0.77 10.06 59.85 0.60 1.38 16 20 C 0.67 9.36 8.17 -87.37 -0.71 8.65 16 21 O -0.56 -8.33 15.07 5.25 0.08 -8.25 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.09 0.82 7.35 -51.93 -0.38 0.44 16 25 H 0.42 6.19 8.08 -40.82 -0.33 5.86 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.02 0.52 7.20 -51.93 -0.37 0.15 16 29 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.10 0.96 6.86 -51.93 -0.36 0.60 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 288.92 15.07 4.35 4.35 Total: -1.00 -31.22 288.92 -5.31 -36.53 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -3.96 Total: 0.81 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -1.33 Total: 12.56 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.13 Total: -54.55 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.17 Total: -15.66 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.22 -5.31 -36.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309523607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.880 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds