Wall clock time and date at job start Mon Mar 30 2020 04:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46989 * 2 1 4 4 N 1.46498 * 109.47199 * 180.02562 * 3 2 1 5 5 C 1.36766 * 119.91435 * 269.72907 * 4 3 2 6 6 N 1.37331 * 120.60581 * 0.02562 * 5 4 3 7 7 C 1.38965 * 118.78263 * 179.78006 * 5 4 3 8 8 N 1.39851 * 120.69928 * 180.21962 * 7 5 4 9 9 C 1.36737 * 120.00384 * 122.95419 * 8 7 5 10 10 H 1.08003 * 120.00129 * 354.48341 * 9 8 7 11 11 C 1.38642 * 120.00040 * 174.47659 * 9 8 7 12 12 N 1.31710 * 120.00363 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99942 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47478 * 60.00220 * 13 11 9 15 15 H 1.48503 * 109.47049 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47180 * 299.99935 * 13 11 9 17 17 C 1.40380 * 118.60681 * 0.48584 * 7 5 4 18 18 O 1.35306 * 120.14440 * 179.73146 * 17 7 5 19 19 N 1.32711 * 119.70732 * 359.75408 * 17 7 5 20 20 C 1.32957 * 121.24135 * 0.02562 * 19 17 7 21 21 O 1.22016 * 119.25835 * 179.97438 * 20 19 17 22 22 H 1.08994 * 109.47540 * 59.99775 * 1 2 3 23 23 H 1.09000 * 109.46996 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46885 * 299.99377 * 1 2 3 25 25 H 1.09004 * 109.46885 * 240.00623 * 2 1 3 26 26 H 1.08996 * 109.47066 * 120.00454 * 2 1 3 27 27 H 1.08996 * 109.47587 * 300.00134 * 3 2 1 28 28 H 1.09004 * 109.46799 * 60.00570 * 3 2 1 29 29 H 0.96996 * 119.99922 * 359.97438 * 6 5 4 30 30 H 0.96999 * 119.99926 * 180.02562 * 6 5 4 31 31 H 0.97006 * 119.99380 * 302.96539 * 8 7 5 32 32 H 0.96995 * 120.00632 * 179.97438 * 12 11 9 33 33 H 0.96703 * 113.99874 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1875 1.4480 1.1845 6 7 3.5122 1.4529 2.3803 7 6 5.5769 1.4432 1.1565 8 7 6.3149 1.4439 2.3444 9 6 7.2196 0.4479 2.5879 10 1 7.3009 -0.3862 1.9066 11 6 8.0326 0.5087 3.7093 12 7 7.9332 1.5257 4.5404 13 14 9.2689 -0.8516 4.0415 14 1 10.2257 -0.9384 2.9092 15 1 10.0091 -0.5528 5.2938 16 1 8.5544 -2.1454 4.1862 17 6 6.2240 1.4435 -0.0892 18 8 7.5756 1.4444 -0.1528 19 7 5.5043 1.4432 -1.2042 20 6 4.1753 1.4433 -1.1671 21 8 3.5495 1.4435 -2.2146 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9562 0.8901 29 1 2.5423 1.4529 2.3895 30 1 4.0051 1.4571 3.2157 31 1 6.1850 2.1510 2.9957 32 1 8.5017 1.5681 5.3252 33 1 7.9270 1.4449 -1.0537 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381574466.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:08 Heat of formation + Delta-G solvation = -20.068032 kcal Electronic energy + Delta-G solvation = -19244.442412 eV Core-core repulsion = 16113.439882 eV Total energy + Delta-G solvation = -3131.002530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.11554 -38.06151 -37.05643 -35.37490 -34.31984 -33.61081 -32.11557 -31.11706 -27.71412 -26.38994 -24.11665 -23.16799 -22.28467 -21.19491 -19.31325 -18.18552 -17.44510 -16.94883 -16.22215 -15.63687 -15.34192 -15.10105 -14.63354 -14.16189 -13.92477 -13.79718 -13.30383 -13.09961 -12.85546 -12.36903 -12.28156 -11.98768 -11.44307 -11.24865 -11.03080 -10.86054 -10.36678 -10.35178 -9.94837 -9.68179 -9.36267 -9.17767 -9.09261 -7.93870 -6.65470 -6.06647 -3.33581 1.55958 2.58533 2.78276 3.33339 3.36761 3.38798 3.77263 4.20159 4.36519 4.46357 4.69886 4.88989 5.05844 5.11292 5.24111 5.34414 5.43997 5.51392 5.62054 5.80970 5.94016 6.00453 6.15087 6.33315 6.47412 6.74178 7.41675 7.59108 7.81017 7.90140 8.15785 8.59342 8.93476 9.20361 9.78287 9.99909 11.11822 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.026524 B = 0.006566 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.400048 B = 4263.511555 C = 4840.705008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.098 3.902 4 N -0.534 5.534 5 C 0.408 3.592 6 N -0.835 5.835 7 C -0.033 4.033 8 N -0.617 5.617 9 C -0.241 4.241 10 H 0.077 0.923 11 C 0.000 4.000 12 N -0.923 5.923 13 Si 0.916 3.084 14 H -0.280 1.280 15 H -0.289 1.289 16 H -0.283 1.283 17 C 0.452 3.548 18 O -0.423 6.423 19 N -0.652 5.652 20 C 0.662 3.338 21 O -0.574 6.574 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.397 0.603 30 H 0.425 0.575 31 H 0.390 0.610 32 H 0.262 0.738 33 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.179 -0.307 -2.612 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C -0.025 4.025 4 N -0.260 5.260 5 C 0.183 3.817 6 N -0.382 5.382 7 C -0.147 4.147 8 N -0.247 5.247 9 C -0.371 4.371 10 H 0.095 0.905 11 C -0.198 4.198 12 N -0.568 5.568 13 Si 0.746 3.254 14 H -0.207 1.207 15 H -0.215 1.215 16 H -0.209 1.209 17 C 0.255 3.745 18 O -0.214 6.214 19 N -0.414 5.414 20 C 0.364 3.636 21 O -0.453 6.453 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.226 0.774 30 H 0.260 0.740 31 H 0.225 0.775 32 H 0.072 0.928 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -11.023 -0.429 -3.387 11.539 hybrid contribution 0.363 -0.404 1.041 1.174 sum -10.660 -0.833 -2.346 10.947 Atomic orbital electron populations 1.21680 0.94704 1.02128 1.01952 1.21869 0.96368 0.96172 1.03418 1.21753 0.78410 0.98411 1.03973 1.46456 1.08426 1.65409 1.05753 1.18039 0.88877 0.94484 0.80329 1.41893 1.09044 1.81822 1.05423 1.16209 0.86291 1.23902 0.88285 1.39508 1.42006 1.28270 1.14910 1.19190 1.12531 0.99145 1.06229 0.90478 1.24851 0.99211 0.98222 0.97507 1.69676 1.41799 1.30679 1.14639 0.86131 0.80997 0.80858 0.77411 1.20661 1.21480 1.20938 1.20903 0.84102 0.80205 0.89279 1.85323 1.15246 1.86400 1.34399 1.69408 1.05295 1.39000 1.27716 1.17080 0.84517 0.79901 0.82135 1.90899 1.66684 1.58143 1.29589 0.92292 0.92259 0.92627 0.90773 0.91526 0.88165 0.90442 0.77352 0.74026 0.77456 0.92833 0.75220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.14 -1.61 6.26 -26.73 -0.17 -1.78 16 3 C 0.10 1.24 4.92 -4.04 -0.02 1.22 16 4 N -0.53 -8.97 2.61 -120.68 -0.31 -9.29 16 5 C 0.41 6.93 7.55 -152.81 -1.15 5.77 16 6 N -0.83 -10.84 8.85 31.56 0.28 -10.56 16 7 C -0.03 -0.67 6.16 -83.12 -0.51 -1.18 16 8 N -0.62 -14.05 4.51 -9.24 -0.04 -14.09 16 9 C -0.24 -6.12 8.88 -15.21 -0.14 -6.26 16 10 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 11 C 0.00 -0.01 5.50 -17.45 -0.10 -0.10 16 12 N -0.92 -25.09 13.06 55.48 0.72 -24.36 16 13 Si 0.92 20.93 29.55 -169.99 -5.02 15.91 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C 0.45 9.35 7.79 -16.37 -0.13 9.22 16 18 O -0.42 -8.27 12.52 -17.61 -0.22 -8.49 16 19 N -0.65 -13.81 10.36 -16.80 -0.17 -13.98 16 20 C 0.66 13.81 8.33 -88.74 -0.74 13.07 16 21 O -0.57 -13.17 16.70 4.90 0.08 -13.09 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 1.35 7.37 -51.93 -0.38 0.96 16 28 H 0.08 0.73 6.43 -51.93 -0.33 0.40 16 29 H 0.40 3.81 6.75 -40.82 -0.28 3.54 16 30 H 0.43 5.87 8.01 -40.82 -0.33 5.54 16 31 H 0.39 9.11 7.87 -40.82 -0.32 8.79 16 32 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 33 H 0.39 5.72 8.98 45.56 0.41 6.13 16 LS Contribution 287.04 15.07 4.33 4.33 Total: -1.00 -32.35 287.04 -5.83 -38.19 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -2.89 Total: 16.36 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: -2.58 Total: 19.08 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: 0.47 Total: -72.29 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.14 Total: -21.58 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.35 -5.83 -38.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381574466.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.119 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds