Wall clock time and date at job start Mon Mar 30 2020 04:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99730 * 2 1 4 4 H 1.48506 * 109.47108 * 269.99336 * 3 2 1 5 5 H 1.48495 * 109.47343 * 29.99570 * 3 2 1 6 6 H 1.48508 * 109.47214 * 149.99860 * 3 2 1 7 7 C 1.37878 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00051 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47022 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46929 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.46980 * 179.97438 * 11 10 9 13 13 C 1.46904 * 110.99962 * 180.02562 * 12 11 10 14 14 C 1.52990 * 109.47024 * 205.00014 * 13 12 11 15 15 C 1.53005 * 109.47213 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.46795 * 60.00309 * 15 14 13 17 17 C 1.50700 * 109.47208 * 59.99892 * 16 15 14 18 18 N 1.34777 * 119.99675 * 180.27843 * 17 16 15 19 19 O 1.21283 * 119.99803 * 359.97438 * 17 16 15 20 20 C 1.52998 * 109.46876 * 300.00027 * 16 15 14 21 21 C 1.52996 * 109.46922 * 84.99821 * 13 12 11 22 22 H 0.96995 * 120.00192 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46818 * 60.00731 * 9 7 2 24 24 H 1.09000 * 109.47548 * 300.00456 * 9 7 2 25 25 H 1.09005 * 109.47166 * 60.00406 * 10 9 7 26 26 H 1.08998 * 109.47365 * 300.00106 * 10 9 7 27 27 H 1.09005 * 109.46946 * 60.00172 * 11 10 9 28 28 H 1.09000 * 109.47514 * 299.99839 * 11 10 9 29 29 H 1.00897 * 110.99645 * 303.95256 * 12 11 10 30 30 H 1.09005 * 109.46799 * 325.00132 * 13 12 11 31 31 H 1.09004 * 109.47351 * 60.00086 * 14 13 12 32 32 H 1.08996 * 109.47567 * 299.99977 * 14 13 12 33 33 H 1.08996 * 109.47069 * 300.00569 * 15 14 13 34 34 H 1.09000 * 109.47011 * 179.97438 * 15 14 13 35 35 H 1.08998 * 109.46846 * 180.02562 * 16 15 14 36 36 H 0.97004 * 119.99652 * 179.72868 * 18 17 16 37 37 H 0.97000 * 119.99894 * 359.71837 * 18 17 16 38 38 H 1.09004 * 109.47239 * 180.02562 * 20 16 15 39 39 H 1.09005 * 109.47323 * 300.00275 * 20 16 15 40 40 H 1.09000 * 109.47764 * 299.99948 * 21 13 12 41 41 H 1.09005 * 109.47129 * 60.00513 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0022 12 7 6.0413 -4.0215 0.0027 13 6 7.5098 -4.0606 0.0045 14 6 7.9855 -5.3810 -0.6046 15 6 9.5150 -5.4215 -0.6033 16 6 10.0269 -5.3093 0.8342 17 6 9.4931 -6.4595 1.6487 18 7 9.8103 -6.5649 2.9544 19 8 8.7737 -7.2871 1.1306 20 6 9.5511 -3.9889 1.4433 21 6 8.0212 -3.9486 1.4422 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6800 0.8912 24 1 3.8753 -0.6803 -0.8888 25 1 3.6586 -3.1501 -0.8893 26 1 3.6579 -3.1506 0.8907 27 1 5.9142 -2.1229 0.8928 28 1 5.9157 -2.1223 -0.8873 29 1 5.6652 -4.5376 0.7838 30 1 7.8961 -3.2287 -0.5844 31 1 7.6212 -5.4608 -1.6288 32 1 7.5992 -6.2129 -0.0157 33 1 9.9010 -4.5896 -1.1924 34 1 9.8538 -6.3624 -1.0369 35 1 11.1165 -5.3378 0.8351 36 1 9.4635 -7.3030 3.4796 37 1 10.3854 -5.9027 3.3688 38 1 9.9162 -3.9088 2.4673 39 1 9.9371 -3.1570 0.8542 40 1 7.6823 -3.0079 1.8762 41 1 7.6348 -4.7805 2.0311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578473.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:50 Heat of formation + Delta-G solvation = -71.425839 kcal Electronic energy + Delta-G solvation = -19012.256922 eV Core-core repulsion = 16118.400788 eV Total energy + Delta-G solvation = -2893.856134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.68677 -37.92257 -35.49330 -34.09934 -33.29329 -31.56699 -30.77651 -29.11071 -26.11109 -23.51344 -22.85321 -21.96773 -21.11393 -20.03012 -19.52976 -17.46292 -16.79749 -16.57899 -16.13084 -15.32784 -14.94592 -14.46008 -14.26599 -14.04069 -13.91089 -13.35374 -12.98026 -12.88847 -12.49553 -12.37474 -12.11451 -11.82120 -11.62222 -11.28968 -10.95682 -10.91576 -10.79133 -10.54958 -10.40977 -9.99600 -9.90237 -9.68974 -9.66081 -9.47331 -9.12380 -8.49778 -8.08692 -6.00010 -3.97467 2.40775 3.25444 3.33056 3.39824 3.43623 4.27800 4.37334 4.47787 4.48602 4.69000 4.81382 5.03825 5.10187 5.20262 5.33775 5.34166 5.42366 5.53471 5.63155 5.69851 5.77419 5.85264 5.87932 5.96581 6.10957 6.24331 6.33662 6.41011 6.57662 6.63443 6.69704 6.97614 7.03424 7.33126 7.42556 7.50206 7.68269 7.85047 8.03021 8.59946 9.06004 9.62656 11.13697 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.041112 B = 0.003531 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.909620 B = 7928.043551 C = 8036.881800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.057 3.943 12 N -0.685 5.685 13 C 0.088 3.912 14 C -0.121 4.121 15 C -0.098 4.098 16 C -0.110 4.110 17 C 0.522 3.478 18 N -0.859 5.859 19 O -0.533 6.533 20 C -0.105 4.105 21 C -0.154 4.154 22 H 0.262 0.738 23 H 0.012 0.988 24 H 0.011 0.989 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.065 0.935 29 H 0.338 0.662 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.399 0.601 37 H 0.399 0.601 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.535 -9.744 5.082 27.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.138 4.138 11 C -0.071 4.071 12 N -0.314 5.314 13 C -0.022 4.022 14 C -0.158 4.158 15 C -0.136 4.136 16 C -0.132 4.132 17 C 0.308 3.692 18 N -0.423 5.423 19 O -0.409 6.409 20 C -0.144 4.144 21 C -0.193 4.193 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.029 0.971 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.230 0.770 37 H 0.227 0.773 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 24.853 -10.125 3.872 27.114 hybrid contribution 0.728 1.309 1.503 2.122 sum 25.581 -8.816 5.375 27.586 Atomic orbital electron populations 1.69921 1.06294 1.26790 1.51456 1.25050 0.94738 0.99169 0.94697 0.86758 0.80276 0.83635 0.78474 1.20295 1.21455 1.19132 1.21173 0.89582 0.94460 1.50376 0.91027 1.19541 0.97116 0.92370 0.96017 1.21448 0.91282 0.99535 1.01557 1.22168 0.97489 0.87918 0.99555 1.60612 1.06206 1.14646 1.49908 1.21603 0.88272 0.98411 0.93936 1.21740 0.93703 0.98097 1.02300 1.21346 0.97018 1.02133 0.93138 1.21406 1.01229 0.93664 0.96866 1.20670 0.79805 0.86492 0.82275 1.43947 1.54752 1.32065 1.11542 1.90707 1.36440 1.42827 1.70880 1.21489 0.96418 0.95855 1.00606 1.22360 0.95367 1.02179 0.99365 0.92808 0.96936 0.97086 0.91953 0.93123 0.95995 0.91637 0.84374 0.90928 0.91446 0.89210 0.91390 0.91286 0.88706 0.77006 0.77265 0.91783 0.90519 0.91583 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.57 13.96 55.43 0.77 -27.80 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -2.07 5.41 -26.73 -0.14 -2.22 16 11 C 0.06 0.97 5.48 -3.82 -0.02 0.95 16 12 N -0.68 -10.27 6.25 -106.72 -0.67 -10.93 16 13 C 0.09 1.08 2.47 -67.72 -0.17 0.91 16 14 C -0.12 -1.46 5.23 -26.73 -0.14 -1.60 16 15 C -0.10 -0.91 5.09 -26.73 -0.14 -1.05 16 16 C -0.11 -0.84 3.01 -91.77 -0.28 -1.11 16 17 C 0.52 4.90 5.91 -10.98 -0.06 4.84 16 18 N -0.86 -4.98 8.76 31.22 0.27 -4.71 16 19 O -0.53 -7.29 14.49 5.55 0.08 -7.21 16 20 C -0.11 -0.76 5.35 -26.71 -0.14 -0.91 16 21 C -0.15 -1.58 4.95 -26.71 -0.13 -1.72 16 22 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 23 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 24 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 25 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.02 0.36 7.43 -51.93 -0.39 -0.03 16 28 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 29 H 0.34 5.01 8.47 -39.29 -0.33 4.68 16 30 H 0.07 0.90 7.80 -51.93 -0.41 0.49 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.28 5.51 -51.93 -0.29 0.99 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.40 2.10 8.93 -40.82 -0.36 1.74 16 37 H 0.40 1.18 8.24 -40.82 -0.34 0.85 16 38 H 0.06 0.34 7.56 -51.93 -0.39 -0.05 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.72 7.45 -51.93 -0.39 0.34 16 41 H 0.06 0.70 7.21 -51.93 -0.37 0.33 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -33.92 318.45 -8.17 -42.09 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.99 Total: 2.34 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.77 Total: -16.08 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.38 Total: -43.44 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: 0.08 Total: -7.21 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.92 -8.17 -42.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578473.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.332 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds