Wall clock time and date at job start Mon Mar 30 2020 05:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46929 * 2 1 4 4 C 1.53005 * 109.47242 * 176.77382 * 3 2 1 5 5 C 1.50694 * 109.52245 * 62.63381 * 4 3 2 6 6 O 1.21281 * 119.99783 * 247.02358 * 5 4 3 7 7 N 1.34773 * 120.00026 * 67.02012 * 5 4 3 8 8 C 1.46500 * 119.99819 * 175.43262 * 7 5 4 9 9 C 1.50703 * 109.47191 * 180.02562 * 8 7 5 10 10 H 1.08009 * 119.99675 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00405 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99705 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00254 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46713 * 60.00216 * 13 11 9 15 15 H 1.48491 * 109.47057 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46911 * 300.00395 * 13 11 9 17 17 C 1.53120 * 109.57582 * 182.79624 * 4 3 2 18 18 C 1.53035 * 109.27533 * 177.59073 * 17 4 3 19 19 N 1.46844 * 109.52415 * 300.81543 * 18 17 4 20 20 C 1.46850 * 111.19719 * 61.74712 * 19 18 17 21 21 C 1.53033 * 109.52099 * 298.25496 * 20 19 18 22 22 H 1.08992 * 109.47039 * 59.99472 * 1 2 3 23 23 H 1.09001 * 109.46519 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46639 * 299.99578 * 1 2 3 25 25 H 1.09003 * 109.47113 * 240.00644 * 2 1 3 26 26 H 1.08994 * 109.47458 * 120.00201 * 2 1 3 27 27 H 1.09006 * 109.47371 * 56.77606 * 3 2 1 28 28 H 1.08998 * 109.47787 * 296.77671 * 3 2 1 29 29 H 0.96999 * 120.00517 * 355.71048 * 7 5 4 30 30 H 1.08994 * 109.47391 * 299.99951 * 8 7 5 31 31 H 1.09005 * 109.47239 * 60.00462 * 8 7 5 32 32 H 0.97001 * 119.99648 * 179.97438 * 12 11 9 33 33 H 1.08999 * 109.50063 * 297.52658 * 17 4 3 34 34 H 1.08990 * 109.50502 * 57.64856 * 17 4 3 35 35 H 1.09003 * 109.46259 * 180.80233 * 18 17 4 36 36 H 1.09006 * 109.45699 * 60.82846 * 18 17 4 37 37 H 1.00899 * 111.00061 * 185.83777 * 19 18 17 38 38 H 1.09000 * 109.46101 * 178.24089 * 20 19 18 39 39 H 1.08997 * 109.45402 * 58.26870 * 20 19 18 40 40 H 1.09000 * 109.50837 * 299.24307 * 21 20 19 41 41 H 1.09001 * 109.50770 * 179.12115 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5679 1.4433 0.0812 5 6 4.1374 0.7672 -1.1392 6 8 4.7221 -0.2897 -1.0295 7 7 3.9970 1.3369 -2.3525 8 6 4.6357 0.7321 -3.5240 9 6 4.3267 1.5573 -4.7466 10 1 3.7152 2.4434 -4.6597 11 6 4.8245 1.1811 -5.9762 12 7 5.5686 0.1019 -6.0821 13 14 4.4408 2.2036 -7.4918 14 1 4.9577 3.5828 -7.3022 15 1 5.0884 1.5906 -8.6792 16 1 2.9711 2.2497 -7.6986 17 6 4.0771 2.8857 0.1516 18 6 5.6009 2.8771 0.2932 19 7 5.9766 2.1465 1.5103 20 6 5.5395 0.7460 1.4452 21 6 4.0139 0.6909 1.3381 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.6302 1.9728 0.8597 28 1 1.7247 1.9394 -0.9174 29 1 3.4764 2.1496 -2.4494 30 1 5.7145 0.6979 -3.3725 31 1 4.2559 -0.2801 -3.6630 32 1 5.9185 -0.1629 -6.9471 33 1 3.7993 3.4145 -0.7600 34 1 3.6345 3.3862 1.0127 35 1 5.9654 3.9023 0.3579 36 1 6.0434 2.3885 -0.5750 37 1 6.9699 2.2078 1.6767 38 1 5.8594 0.2235 2.3467 39 1 5.9825 0.2677 0.5717 40 1 3.5702 1.1571 2.2178 41 1 3.6908 -0.3481 1.2741 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062848040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:43 Heat of formation + Delta-G solvation = -88.828357 kcal Electronic energy + Delta-G solvation = -20138.416235 eV Core-core repulsion = 17243.805471 eV Total energy + Delta-G solvation = -2894.610764 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.78542 -38.46373 -36.27936 -36.15451 -34.40816 -32.81573 -31.65527 -29.34457 -27.77006 -25.40554 -24.24834 -23.76435 -22.44444 -21.60987 -20.44392 -18.44909 -17.76348 -17.06060 -16.99281 -16.51316 -16.18271 -15.57425 -15.54036 -14.93278 -14.78546 -14.58743 -14.43894 -14.05383 -13.70269 -13.48766 -13.18014 -13.01419 -12.91018 -12.76434 -12.70415 -12.42837 -12.26088 -12.19213 -12.03996 -11.61022 -11.53953 -11.20725 -11.03992 -10.81380 -10.50043 -9.80789 -9.42109 -8.32041 -6.49248 1.40163 1.44451 1.52708 1.82247 2.30409 2.59170 3.02585 3.29501 3.58191 3.68462 3.79326 4.12216 4.17643 4.26165 4.28240 4.46043 4.52541 4.63747 4.66360 4.79245 4.82307 4.89300 4.95015 4.96966 5.04199 5.07305 5.14736 5.18293 5.20728 5.27285 5.33012 5.36017 5.45458 5.50081 5.68928 5.82909 6.00382 6.42696 6.62006 6.92837 7.20743 7.51437 8.80026 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.006266 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.153321 B = 4467.826465 C = 5114.303954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C -0.099 4.099 4 C -0.072 4.072 5 C 0.510 3.490 6 O -0.599 6.599 7 N -0.707 5.707 8 C 0.273 3.727 9 C -0.557 4.557 10 H 0.083 0.917 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.984 3.016 14 H -0.260 1.260 15 H -0.285 1.285 16 H -0.261 1.261 17 C -0.100 4.100 18 C 0.050 3.950 19 N -0.677 5.677 20 C 0.046 3.954 21 C -0.085 4.085 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.021 0.979 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.403 0.597 30 H -0.020 1.020 31 H -0.019 1.019 32 H 0.269 0.731 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.098 0.902 36 H -0.007 1.007 37 H 0.346 0.654 38 H 0.086 0.914 39 H 0.011 0.989 40 H 0.100 0.900 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.405 7.751 15.102 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C -0.137 4.137 4 C -0.075 4.075 5 C 0.298 3.702 6 O -0.481 6.481 7 N -0.357 5.357 8 C 0.150 3.850 9 C -0.594 4.594 10 H 0.101 0.899 11 C -0.195 4.195 12 N -0.570 5.570 13 Si 0.807 3.193 14 H -0.185 1.185 15 H -0.210 1.210 16 H -0.186 1.186 17 C -0.138 4.138 18 C -0.079 4.079 19 N -0.308 5.308 20 C -0.084 4.084 21 C -0.123 4.123 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.040 0.960 26 H 0.088 0.912 27 H 0.126 0.874 28 H 0.086 0.914 29 H 0.239 0.761 30 H -0.002 1.002 31 H -0.001 1.001 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.011 0.989 37 H 0.164 0.836 38 H 0.104 0.896 39 H 0.029 0.971 40 H 0.118 0.882 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.437 7.105 15.377 18.500 hybrid contribution 0.969 -0.455 -2.019 2.286 sum -6.467 6.649 13.358 16.262 Atomic orbital electron populations 1.21718 0.93931 1.01909 1.02582 1.21606 0.97350 0.96958 1.00880 1.21666 0.90436 0.97333 1.04227 1.21008 0.97661 0.96989 0.91867 1.21330 0.78784 0.84652 0.85467 1.90586 1.45632 1.24906 1.86927 1.46194 1.52618 1.29318 1.07523 1.18424 0.90674 0.92630 0.83281 1.21583 1.33745 1.11658 0.92448 0.89913 1.26079 0.94100 0.96325 1.03021 1.70140 1.34697 1.25874 1.26329 0.85221 0.79005 0.78508 0.76600 1.18494 1.21027 1.18596 1.21694 0.94597 0.93286 1.04179 1.21992 0.96785 0.99211 0.89926 1.60465 1.21216 1.12516 1.36568 1.22051 0.96769 0.89199 1.00356 1.21447 0.94775 0.99979 0.96074 0.92942 0.92921 0.90508 0.96045 0.91171 0.87389 0.91374 0.76134 1.00168 1.00058 0.92252 0.90498 0.87276 0.88420 0.98896 0.83590 0.89591 0.97069 0.88158 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.91 71.98 0.71 -2.20 16 2 C -0.13 -3.37 5.35 30.60 0.16 -3.21 16 3 C -0.10 -2.27 4.26 30.59 0.13 -2.14 16 4 C -0.07 -2.03 0.43 -52.85 -0.02 -2.05 16 5 C 0.51 20.88 3.89 87.66 0.34 21.22 16 6 O -0.60 -30.15 14.10 -3.03 -0.04 -30.19 16 7 N -0.71 -30.91 5.35 -466.80 -2.50 -33.40 16 8 C 0.27 15.40 5.43 85.63 0.47 15.87 16 9 C -0.56 -30.82 9.28 25.60 0.24 -30.58 16 10 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 11 C 0.00 0.24 5.46 84.65 0.46 0.71 16 12 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 13 Si 0.98 42.64 29.54 68.60 2.03 44.67 16 14 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 16 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 17 C -0.10 -2.36 4.76 30.65 0.15 -2.21 16 18 C 0.05 1.35 6.34 86.33 0.55 1.90 16 19 N -0.68 -17.02 6.85 -514.01 -3.52 -20.54 16 20 C 0.05 1.33 6.28 86.32 0.54 1.87 16 21 C -0.08 -2.27 4.02 30.65 0.12 -2.15 16 22 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.02 0.72 7.41 -2.39 -0.02 0.71 16 26 H 0.07 1.74 6.26 -2.39 -0.01 1.72 16 27 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.07 1.57 7.90 -2.39 -0.02 1.55 16 29 H 0.40 14.95 7.20 -92.71 -0.67 14.28 16 30 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 31 H -0.02 -1.19 8.14 -2.38 -0.02 -1.21 16 32 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.08 1.74 7.23 -2.39 -0.02 1.72 16 34 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 36 H -0.01 -0.26 7.31 -2.38 -0.02 -0.28 16 37 H 0.35 7.77 8.90 -89.69 -0.80 6.97 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.01 0.43 5.98 -2.39 -0.01 0.41 16 40 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.06 1.82 6.27 -2.39 -0.01 1.81 16 Total: -1.00 -71.97 317.63 -0.34 -72.31 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -0.45 Total: 26.95 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 3.85 Total: -2.98 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -5.73 Total: -110.77 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.04 Total: -30.19 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -71.97 -0.34 -72.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062848040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.518 kcal (2) G-P(sol) polarization free energy of solvation -71.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds