Wall clock time and date at job start Mon Mar 30 2020 05:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46953 * 2 1 4 4 C 1.52998 * 109.47285 * 175.33440 * 3 2 1 5 5 C 1.50701 * 110.27154 * 301.98938 * 4 3 2 6 6 O 1.21282 * 120.00074 * 126.89287 * 5 4 3 7 7 N 1.34773 * 119.99963 * 306.89455 * 5 4 3 8 8 C 1.46507 * 120.00114 * 174.98776 * 7 5 4 9 9 H 1.08999 * 109.46766 * 34.99788 * 8 7 5 10 10 C 1.52994 * 109.46831 * 274.99762 * 8 7 5 11 11 C 1.50695 * 109.46984 * 154.99918 * 8 7 5 12 12 H 1.08001 * 120.00495 * 359.97438 * 11 8 7 13 13 C 1.37883 * 119.99783 * 180.02562 * 11 8 7 14 14 N 1.31522 * 119.99753 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00087 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47384 * 89.99418 * 15 13 11 17 17 H 1.48500 * 109.46849 * 209.99603 * 15 13 11 18 18 H 1.48503 * 109.47117 * 329.99584 * 15 13 11 19 19 C 1.54598 * 110.39378 * 179.84439 * 4 3 2 20 20 C 1.54939 * 102.92018 * 219.08132 * 19 4 3 21 21 N 1.48537 * 103.22812 * 37.41532 * 20 19 4 22 22 C 1.47909 * 105.81915 * 320.78960 * 21 20 19 23 23 H 1.09002 * 109.47310 * 300.00194 * 1 2 3 24 24 H 1.09001 * 109.46905 * 60.00415 * 1 2 3 25 25 H 1.09000 * 109.46886 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47161 * 240.00340 * 2 1 3 27 27 H 1.08998 * 109.47542 * 119.99959 * 2 1 3 28 28 H 1.08998 * 109.47010 * 55.32873 * 3 2 1 29 29 H 1.09002 * 109.46803 * 295.33405 * 3 2 1 30 30 H 0.96998 * 120.00488 * 354.98375 * 7 5 4 31 31 H 1.09001 * 109.47463 * 179.97438 * 10 8 7 32 32 H 1.08999 * 109.47467 * 299.99597 * 10 8 7 33 33 H 1.09005 * 109.47304 * 60.00271 * 10 8 7 34 34 H 0.97003 * 119.99440 * 180.02562 * 14 13 11 35 35 H 1.08994 * 110.72043 * 337.44260 * 19 4 3 36 36 H 1.09002 * 110.72012 * 100.72291 * 19 4 3 37 37 H 1.08999 * 110.66851 * 278.98077 * 20 19 4 38 38 H 1.08992 * 110.80793 * 155.91725 * 20 19 4 39 39 H 1.00897 * 110.99934 * 81.30423 * 21 20 19 40 40 H 1.08995 * 109.91945 * 265.97901 * 22 21 20 41 41 H 1.09002 * 110.08115 * 144.77196 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5655 1.4442 0.1173 5 6 3.9934 0.7287 1.3727 6 8 4.8031 -0.1722 1.3112 7 7 3.4763 1.0898 2.5637 8 6 3.8073 0.3246 3.7684 9 1 4.8363 -0.0289 3.7029 10 6 2.8631 -0.8733 3.8871 11 6 3.6552 1.2062 4.9811 12 1 3.3435 2.2338 4.8660 13 6 3.9149 0.7011 6.2375 14 7 4.2949 -0.5502 6.3776 15 14 3.7256 1.7937 7.7408 16 1 2.3373 1.6890 8.2572 17 1 4.6792 1.3579 8.7925 18 1 4.0100 3.2026 7.3677 19 6 4.1043 2.8933 0.1154 20 6 5.3932 2.7825 -0.7374 21 7 5.0193 1.8069 -1.7932 22 6 4.1974 0.7784 -1.1191 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6099 1.9799 0.8452 29 1 1.7465 1.9316 -0.9289 30 1 2.8850 1.8564 2.6235 31 1 3.1096 -1.4430 4.7831 32 1 1.8341 -0.5198 3.9526 33 1 2.9731 -1.5110 3.0099 34 1 4.4772 -0.9056 7.2615 35 1 3.3893 3.5700 -0.3522 36 1 4.3391 3.2187 1.1289 37 1 6.2199 2.4020 -0.1375 38 1 5.6503 3.7459 -1.1774 39 1 4.5010 2.2561 -2.5333 40 1 4.8268 -0.0562 -0.8105 41 1 3.4152 0.4249 -1.7910 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062903338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:35 Heat of formation + Delta-G solvation = -57.526104 kcal Electronic energy + Delta-G solvation = -20156.986912 eV Core-core repulsion = 17263.733516 eV Total energy + Delta-G solvation = -2893.253396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25199 -37.32838 -34.84471 -34.61706 -32.37340 -30.74253 -28.96696 -28.54474 -25.43863 -25.26808 -22.61792 -22.31935 -20.96624 -20.08683 -18.74519 -17.01842 -16.53829 -15.78107 -15.37601 -15.01649 -14.58935 -14.07149 -13.81955 -13.60703 -13.33552 -12.84838 -12.48593 -12.35733 -12.29836 -12.00553 -11.79661 -11.46580 -11.35247 -11.09524 -11.05575 -10.95244 -10.80059 -10.70361 -10.46671 -10.36372 -10.30427 -10.23492 -9.04096 -8.97782 -8.56991 -8.46231 -7.87203 -6.12695 -4.21878 3.23180 3.30222 3.32220 3.40167 4.05045 4.27684 4.36840 4.65256 4.82392 4.98478 5.12708 5.19528 5.20506 5.28548 5.42816 5.49092 5.54062 5.68429 5.75460 5.81460 5.87369 5.97646 6.06468 6.12856 6.22856 6.32470 6.39546 6.45923 6.75194 6.82575 6.95547 7.14890 7.41037 7.48424 7.57449 7.69818 7.91880 8.15200 8.69102 8.78931 9.15594 9.46004 10.93264 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.023132 B = 0.006248 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.176073 B = 4480.341232 C = 4971.754226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C -0.098 4.098 4 C -0.112 4.112 5 C 0.519 3.481 6 O -0.551 6.551 7 N -0.707 5.707 8 C 0.264 3.736 9 H 0.048 0.952 10 C -0.145 4.145 11 C -0.533 4.533 12 H 0.060 0.940 13 C 0.066 3.934 14 N -0.883 5.883 15 Si 0.901 3.099 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.146 4.146 20 C 0.043 3.957 21 N -0.671 5.671 22 C 0.053 3.947 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.386 0.614 31 H 0.090 0.910 32 H 0.026 0.974 33 H 0.012 0.988 34 H 0.264 0.736 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.330 0.670 40 H 0.102 0.898 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.603 6.054 -13.132 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C -0.136 4.136 4 C -0.117 4.117 5 C 0.303 3.697 6 O -0.430 6.430 7 N -0.354 5.354 8 C 0.162 3.838 9 H 0.066 0.934 10 C -0.204 4.204 11 C -0.571 4.571 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.521 5.521 15 Si 0.728 3.272 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.185 4.185 20 C -0.086 4.086 21 N -0.296 5.296 22 C -0.076 4.076 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.219 0.781 31 H 0.108 0.892 32 H 0.045 0.955 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.144 0.856 40 H 0.120 0.880 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.321 4.855 -13.023 14.555 hybrid contribution -1.370 1.429 1.196 2.312 sum -5.691 6.284 -11.827 14.552 Atomic orbital electron populations 1.21734 0.95806 1.01573 1.01442 1.21627 0.95812 0.96498 1.02909 1.21622 0.92246 0.97683 1.02080 1.22140 0.96854 0.96324 0.96379 1.19980 0.81254 0.83671 0.84747 1.90627 1.34072 1.31855 1.86406 1.46470 1.48382 1.32338 1.08199 1.18721 0.95972 0.89135 0.79927 0.93377 1.22073 0.98192 0.99172 1.00943 1.21212 1.47660 0.97391 0.90883 0.92205 1.24888 0.94667 0.95167 0.98969 1.69907 1.45141 1.13523 1.23506 0.86464 0.77953 0.80561 0.82217 1.20560 1.21048 1.19896 1.23185 0.98308 0.94569 1.02449 1.23107 0.97247 0.95430 0.92813 1.62762 1.42440 1.13661 1.10786 1.22911 0.96048 0.96454 0.92213 0.92601 0.93179 0.92822 0.91953 0.91044 0.91350 0.91673 0.78137 0.89191 0.95509 0.96851 0.92587 0.90822 0.90107 0.89886 0.90790 0.85571 0.88035 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.13 -1.73 5.48 -26.73 -0.15 -1.87 16 3 C -0.10 -1.21 3.86 -26.73 -0.10 -1.31 16 4 C -0.11 -1.62 0.56 -154.30 -0.09 -1.71 16 5 C 0.52 10.24 5.00 -10.99 -0.05 10.19 16 6 O -0.55 -13.23 14.88 5.56 0.08 -13.14 16 7 N -0.71 -14.58 4.86 -54.93 -0.27 -14.84 16 8 C 0.26 6.71 2.60 -69.08 -0.18 6.53 16 9 H 0.05 1.43 7.51 -51.93 -0.39 1.04 16 10 C -0.15 -3.60 9.26 37.15 0.34 -3.25 16 11 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.07 1.79 5.30 -17.81 -0.09 1.69 16 14 N -0.88 -24.96 11.32 55.43 0.63 -24.34 16 15 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 C -0.15 -1.84 6.15 -24.87 -0.15 -1.99 16 20 C 0.04 0.55 7.55 -1.89 -0.01 0.53 16 21 N -0.67 -8.57 7.51 -110.08 -0.83 -9.39 16 22 C 0.05 0.76 6.36 -2.75 -0.02 0.75 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.78 6.85 -51.93 -0.36 0.43 16 27 H 0.07 1.18 7.04 -51.93 -0.37 0.82 16 28 H 0.07 0.84 7.44 -51.93 -0.39 0.45 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.39 7.06 7.80 -40.82 -0.32 6.74 16 31 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 36 H 0.08 1.12 7.81 -51.93 -0.41 0.71 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.33 3.36 8.92 -39.29 -0.35 3.01 16 40 H 0.10 1.81 6.43 -51.93 -0.33 1.48 16 41 H 0.07 0.83 6.56 -51.93 -0.34 0.49 16 LS Contribution 321.67 15.07 4.85 4.85 Total: -1.00 -29.98 321.67 -7.89 -37.87 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -6.89 Total: 9.52 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -0.44 Total: -6.16 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.47 Total: -48.57 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.14 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.98 -7.89 -37.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062903338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.659 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds