Wall clock time and date at job start Mon Mar 30 2020 05:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47418 * 2 1 4 4 C 1.50703 * 110.28862 * 298.69184 * 3 2 1 5 5 O 1.21286 * 120.00169 * 123.94530 * 4 3 2 6 6 N 1.34775 * 119.99714 * 303.94837 * 4 3 2 7 7 C 1.46497 * 120.00243 * 354.74840 * 6 4 3 8 8 C 1.46508 * 119.99677 * 174.74641 * 6 4 3 9 9 H 1.08998 * 109.46842 * 0.02562 * 8 6 4 10 10 C 1.52996 * 109.47009 * 239.99789 * 8 6 4 11 11 C 1.50694 * 109.46725 * 120.00041 * 8 6 4 12 12 H 1.08002 * 120.00690 * 359.97438 * 11 8 6 13 13 C 1.37884 * 119.99816 * 179.97438 * 11 8 6 14 14 N 1.31515 * 119.99927 * 359.97438 * 13 11 8 15 15 Si 1.86807 * 119.99744 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47095 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46807 * 120.00285 * 15 13 11 18 18 H 1.48498 * 109.46617 * 239.99696 * 15 13 11 19 19 C 1.54255 * 110.32696 * 176.56458 * 3 2 1 20 20 C 1.54382 * 105.14938 * 241.05585 * 19 3 2 21 21 N 1.48717 * 104.51468 * 336.26266 * 20 19 3 22 22 C 1.48563 * 104.28951 * 39.36952 * 21 20 19 23 23 H 1.09004 * 109.46765 * 64.87154 * 1 2 3 24 24 H 1.08992 * 109.47546 * 184.86824 * 1 2 3 25 25 H 1.09000 * 109.46778 * 304.88163 * 1 2 3 26 26 H 1.08997 * 109.46789 * 239.99405 * 2 1 3 27 27 H 1.08999 * 109.46576 * 119.99656 * 2 1 3 28 28 H 1.08996 * 109.47183 * 95.11054 * 7 6 4 29 29 H 1.09003 * 109.47181 * 215.11155 * 7 6 4 30 30 H 1.09001 * 109.46709 * 335.10861 * 7 6 4 31 31 H 1.09004 * 109.46901 * 60.00379 * 10 8 6 32 32 H 1.08999 * 109.46849 * 180.02562 * 10 8 6 33 33 H 1.08998 * 109.47127 * 299.99995 * 10 8 6 34 34 H 0.96996 * 119.99440 * 179.97438 * 14 13 11 35 35 H 1.09001 * 110.32054 * 359.97438 * 19 3 2 36 36 H 1.08994 * 110.32866 * 122.10309 * 19 3 2 37 37 H 1.08991 * 110.41297 * 94.97612 * 20 19 3 38 38 H 1.09008 * 110.40637 * 217.41632 * 20 19 3 39 39 H 1.00902 * 111.01318 * 158.96692 * 21 20 19 40 40 H 1.09002 * 110.41104 * 201.79507 * 22 21 20 41 41 H 1.08999 * 110.40924 * 79.34738 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5745 2.1613 -1.2400 5 8 0.9420 3.1916 -1.1422 6 7 1.8610 1.6594 -2.4575 7 6 2.7213 0.4799 -2.5797 8 6 1.3120 2.2933 -3.6588 9 1 0.7017 3.1494 -3.3712 10 6 0.4496 1.2839 -4.4193 11 6 2.4411 2.7562 -4.5430 12 1 3.4652 2.5949 -4.2403 13 6 2.1667 3.3859 -5.7386 14 7 0.9197 3.5820 -6.1076 15 14 3.5664 3.9604 -6.8344 16 1 4.8645 3.6235 -6.1967 17 1 3.4719 3.2845 -8.1532 18 1 3.4751 5.4304 -7.0238 19 6 3.5801 1.4663 0.0867 20 6 3.8988 2.2195 1.3960 21 7 2.6950 3.0557 1.6475 22 6 1.5556 2.1825 1.2653 23 1 -0.3633 0.4364 -0.9305 24 1 -0.3634 -1.0239 0.0872 25 1 -0.3633 0.5877 0.8430 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1032 -0.4154 -2.6449 29 1 3.3312 0.5666 -3.4790 30 1 3.3696 0.4111 -1.7062 31 1 -0.3670 0.9491 -3.7797 32 1 0.0416 1.7555 -5.3133 33 1 1.0603 0.4281 -4.7069 34 1 0.7268 4.0252 -6.9485 35 1 3.9725 0.4503 0.1297 36 1 3.9992 1.9978 -0.7676 37 1 4.0489 1.5143 2.2134 38 1 4.7804 2.8478 1.2681 39 1 2.6362 3.3224 2.6189 40 1 0.6747 2.7838 1.0401 41 1 1.3380 1.4711 2.0619 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:15 Heat of formation + Delta-G solvation = -28.279441 kcal Electronic energy + Delta-G solvation = -20622.128496 eV Core-core repulsion = 17730.143330 eV Total energy + Delta-G solvation = -2891.985166 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.31540 -37.28445 -35.25123 -33.83604 -32.50908 -30.10245 -28.92244 -27.83919 -26.13866 -25.18216 -23.28378 -22.37827 -21.33085 -19.80878 -17.96576 -16.49434 -16.30686 -15.96939 -15.46321 -14.79616 -14.59394 -14.25555 -13.43874 -13.26046 -13.17266 -12.63138 -12.61848 -12.30650 -12.22824 -12.01836 -11.64894 -11.50487 -11.31412 -11.15527 -11.04112 -10.94687 -10.77308 -10.67610 -10.44876 -10.25298 -10.18063 -10.11023 -9.10896 -8.69862 -8.43099 -8.36460 -7.47184 -6.02739 -4.09990 3.28551 3.36486 3.39292 3.51702 4.00469 4.33999 4.44059 4.63794 4.82222 4.98745 5.17674 5.25390 5.28631 5.33958 5.48256 5.58375 5.69762 5.72026 5.86852 5.89327 5.97991 6.01842 6.06789 6.13528 6.22912 6.32314 6.40659 6.47039 6.79522 6.84491 6.89043 7.11827 7.39592 7.51988 7.61040 7.77796 8.07967 8.26720 8.63917 8.90171 9.19663 9.56560 11.02594 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.006837 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.664156 B = 4094.530173 C = 4472.979758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.082 4.082 4 C 0.524 3.476 5 O -0.542 6.542 6 N -0.592 5.592 7 C 0.074 3.926 8 C 0.259 3.741 9 H 0.062 0.938 10 C -0.145 4.145 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.063 3.937 14 N -0.888 5.888 15 Si 0.897 3.103 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.115 4.115 20 C 0.036 3.964 21 N -0.659 5.659 22 C 0.057 3.943 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.009 0.991 32 H 0.092 0.908 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.332 0.668 40 H 0.098 0.902 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 -9.106 12.896 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.086 4.086 4 C 0.310 3.690 5 O -0.420 6.420 6 N -0.323 5.323 7 C -0.070 4.070 8 C 0.159 3.841 9 H 0.079 0.921 10 C -0.204 4.204 11 C -0.561 4.561 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.527 5.527 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.153 4.153 20 C -0.093 4.093 21 N -0.287 5.287 22 C -0.072 4.072 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.111 0.889 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.147 0.853 40 H 0.116 0.884 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.238 -8.043 12.144 14.921 hybrid contribution 0.798 -0.463 0.022 0.923 sum 4.036 -8.505 12.166 15.383 Atomic orbital electron populations 1.21794 0.95352 1.01315 1.02675 1.21882 0.96809 0.94066 1.02995 1.21536 0.96093 0.95897 0.95121 1.19919 0.80133 0.84829 0.84135 1.90631 1.41540 1.23577 1.86245 1.48081 1.48259 1.29055 1.06921 1.21909 0.94414 0.87985 1.02679 1.18887 0.93479 0.91957 0.79787 0.92064 1.22076 0.97571 0.98725 1.01994 1.21365 0.92799 1.38160 1.03727 0.92281 1.24896 0.95693 0.95601 0.97664 1.69891 1.17535 1.42512 1.22770 0.86461 0.82266 0.78547 0.80243 1.19844 1.20997 1.20933 1.22476 0.93760 1.00464 0.98611 1.22957 0.94873 0.95188 0.96313 1.63706 1.01735 1.37538 1.25737 1.22882 0.95802 0.94521 0.93986 0.92117 0.92750 0.92652 0.89902 0.91776 0.93883 0.90643 0.91806 0.97153 0.88922 0.95247 0.92820 0.90597 0.90043 0.94462 0.90206 0.85265 0.88424 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.47 37.16 0.35 -1.69 16 2 C -0.12 -1.53 4.37 -26.73 -0.12 -1.64 16 3 C -0.08 -1.28 0.42 -154.28 -0.06 -1.34 16 4 C 0.52 11.06 5.24 -10.98 -0.06 11.01 16 5 O -0.54 -13.87 14.79 5.55 0.08 -13.79 16 6 N -0.59 -12.74 2.75 -175.26 -0.48 -13.22 16 7 C 0.07 1.26 7.57 59.85 0.45 1.71 16 8 C 0.26 6.73 2.63 -69.08 -0.18 6.55 16 9 H 0.06 1.86 6.91 -51.93 -0.36 1.50 16 10 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 11 C -0.52 -14.35 8.03 -34.44 -0.28 -14.63 16 12 H 0.06 1.61 7.25 -52.49 -0.38 1.22 16 13 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 14 N -0.89 -25.55 11.32 55.43 0.63 -24.93 16 15 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 C -0.12 -1.57 4.38 -25.35 -0.11 -1.68 16 20 C 0.04 0.44 7.48 -2.09 -0.02 0.43 16 21 N -0.66 -9.43 7.62 -109.53 -0.84 -10.26 16 22 C 0.06 0.85 5.19 -2.18 -0.01 0.84 16 23 H 0.06 0.98 7.48 -51.93 -0.39 0.60 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.71 7.02 -51.93 -0.36 0.34 16 26 H 0.08 1.05 4.52 -51.93 -0.23 0.81 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.66 7.06 -51.93 -0.37 0.29 16 29 H 0.07 1.37 6.97 -51.93 -0.36 1.01 16 30 H 0.06 0.90 3.69 -51.93 -0.19 0.71 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 33 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.08 0.82 7.23 -51.93 -0.38 0.45 16 36 H 0.08 1.31 7.12 -51.93 -0.37 0.94 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.33 3.81 8.92 -39.29 -0.35 3.46 16 40 H 0.10 1.71 6.92 -51.93 -0.36 1.35 16 41 H 0.04 0.48 7.70 -51.93 -0.40 0.08 16 LS Contribution 307.94 15.07 4.64 4.64 Total: -1.00 -31.92 307.94 -7.24 -39.17 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.46 Total: 3.99 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 0.21 Total: -1.97 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.69 Total: -48.41 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.08 Total: -13.79 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.92 -7.24 -39.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.886 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds