Wall clock time and date at job start Mon Mar 30 2020 05:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47418 * 2 1 4 4 C 1.50703 * 110.28862 * 298.69184 * 3 2 1 5 5 O 1.21286 * 120.00169 * 123.94530 * 4 3 2 6 6 N 1.34775 * 119.99714 * 303.94837 * 4 3 2 7 7 C 1.46497 * 120.00243 * 354.74840 * 6 4 3 8 8 C 1.46508 * 119.99677 * 174.74641 * 6 4 3 9 9 H 1.08998 * 109.46842 * 0.02562 * 8 6 4 10 10 C 1.52996 * 109.47009 * 239.99789 * 8 6 4 11 11 C 1.50694 * 109.46725 * 120.00041 * 8 6 4 12 12 H 1.08002 * 120.00690 * 359.97438 * 11 8 6 13 13 C 1.37884 * 119.99816 * 179.97438 * 11 8 6 14 14 N 1.31515 * 119.99927 * 359.97438 * 13 11 8 15 15 Si 1.86807 * 119.99744 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47095 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46807 * 120.00285 * 15 13 11 18 18 H 1.48498 * 109.46617 * 239.99696 * 15 13 11 19 19 C 1.54255 * 110.32696 * 176.56458 * 3 2 1 20 20 C 1.54382 * 105.14938 * 241.05585 * 19 3 2 21 21 N 1.48717 * 104.51468 * 336.26266 * 20 19 3 22 22 C 1.48563 * 104.28951 * 39.36952 * 21 20 19 23 23 H 1.09004 * 109.46765 * 64.87154 * 1 2 3 24 24 H 1.08992 * 109.47546 * 184.86824 * 1 2 3 25 25 H 1.09000 * 109.46778 * 304.88163 * 1 2 3 26 26 H 1.08997 * 109.46789 * 239.99405 * 2 1 3 27 27 H 1.08999 * 109.46576 * 119.99656 * 2 1 3 28 28 H 1.08996 * 109.47183 * 95.11054 * 7 6 4 29 29 H 1.09003 * 109.47181 * 215.11155 * 7 6 4 30 30 H 1.09001 * 109.46709 * 335.10861 * 7 6 4 31 31 H 1.09004 * 109.46901 * 60.00379 * 10 8 6 32 32 H 1.08999 * 109.46849 * 180.02562 * 10 8 6 33 33 H 1.08998 * 109.47127 * 299.99995 * 10 8 6 34 34 H 0.96996 * 119.99440 * 179.97438 * 14 13 11 35 35 H 1.09001 * 110.32054 * 359.97438 * 19 3 2 36 36 H 1.08994 * 110.32866 * 122.10309 * 19 3 2 37 37 H 1.08991 * 110.41297 * 94.97612 * 20 19 3 38 38 H 1.09008 * 110.40637 * 217.41632 * 20 19 3 39 39 H 1.00902 * 111.01318 * 158.96692 * 21 20 19 40 40 H 1.09002 * 110.41104 * 201.79507 * 22 21 20 41 41 H 1.08999 * 110.40924 * 79.34738 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5745 2.1613 -1.2400 5 8 0.9420 3.1916 -1.1422 6 7 1.8610 1.6594 -2.4575 7 6 2.7213 0.4799 -2.5797 8 6 1.3120 2.2933 -3.6588 9 1 0.7017 3.1494 -3.3712 10 6 0.4496 1.2839 -4.4193 11 6 2.4411 2.7562 -4.5430 12 1 3.4652 2.5949 -4.2403 13 6 2.1667 3.3859 -5.7386 14 7 0.9197 3.5820 -6.1076 15 14 3.5664 3.9604 -6.8344 16 1 4.8645 3.6235 -6.1967 17 1 3.4719 3.2845 -8.1532 18 1 3.4751 5.4304 -7.0238 19 6 3.5801 1.4663 0.0867 20 6 3.8988 2.2195 1.3960 21 7 2.6950 3.0557 1.6475 22 6 1.5556 2.1825 1.2653 23 1 -0.3633 0.4364 -0.9305 24 1 -0.3634 -1.0239 0.0872 25 1 -0.3633 0.5877 0.8430 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1032 -0.4154 -2.6449 29 1 3.3312 0.5666 -3.4790 30 1 3.3696 0.4111 -1.7062 31 1 -0.3670 0.9491 -3.7797 32 1 0.0416 1.7555 -5.3133 33 1 1.0603 0.4281 -4.7069 34 1 0.7268 4.0252 -6.9485 35 1 3.9725 0.4503 0.1297 36 1 3.9992 1.9978 -0.7676 37 1 4.0489 1.5143 2.2134 38 1 4.7804 2.8478 1.2681 39 1 2.6362 3.3224 2.6189 40 1 0.6747 2.7838 1.0401 41 1 1.3380 1.4711 2.0619 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:14 Heat of formation + Delta-G solvation = -52.000861 kcal Electronic energy + Delta-G solvation = -20623.157134 eV Core-core repulsion = 17730.143330 eV Total energy + Delta-G solvation = -2893.013804 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.71531 -38.71274 -37.08152 -35.25571 -34.20701 -31.61319 -30.43020 -28.97464 -27.64071 -27.31670 -24.52452 -23.85417 -22.38439 -21.46240 -19.49124 -18.43298 -17.60074 -17.46397 -17.07489 -16.41246 -16.08784 -15.59785 -14.99460 -14.64370 -14.39437 -14.20235 -13.90260 -13.76292 -13.62379 -13.40772 -13.14545 -12.98434 -12.85984 -12.73211 -12.64184 -12.40863 -12.22691 -12.20552 -12.17515 -12.06485 -11.55303 -11.35979 -11.16925 -10.58564 -10.29289 -9.42111 -9.25100 -8.14966 -6.31479 1.38476 1.40611 1.51877 1.92010 2.32893 2.51633 3.12475 3.31949 3.50089 3.66314 3.87123 4.07040 4.22070 4.32276 4.41958 4.51971 4.57963 4.60770 4.71578 4.76436 4.84248 4.86586 4.88648 4.96639 4.99591 5.04865 5.07203 5.10482 5.17349 5.24904 5.37587 5.48526 5.63416 5.69039 5.84936 6.06941 6.17802 6.50990 6.77325 6.92525 7.34356 7.57554 8.89440 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.006837 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.664156 B = 4094.530173 C = 4472.979758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.076 4.076 4 C 0.513 3.487 5 O -0.603 6.603 6 N -0.598 5.598 7 C 0.071 3.929 8 C 0.264 3.736 9 H 0.001 0.999 10 C -0.129 4.129 11 C -0.536 4.536 12 H 0.059 0.941 13 C 0.013 3.987 14 N -0.919 5.919 15 Si 0.965 3.035 16 H -0.265 1.265 17 H -0.272 1.272 18 H -0.286 1.286 19 C -0.116 4.116 20 C 0.040 3.960 21 N -0.690 5.690 22 C 0.061 3.939 23 H 0.018 0.982 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.018 0.982 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.117 0.883 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.347 0.653 40 H 0.058 0.942 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.898 -11.712 14.428 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.080 4.080 4 C 0.302 3.698 5 O -0.484 6.484 6 N -0.328 5.328 7 C -0.071 4.071 8 C 0.161 3.839 9 H 0.019 0.981 10 C -0.187 4.187 11 C -0.574 4.574 12 H 0.077 0.923 13 C -0.187 4.187 14 N -0.558 5.558 15 Si 0.790 3.210 16 H -0.189 1.189 17 H -0.197 1.197 18 H -0.213 1.213 19 C -0.154 4.154 20 C -0.089 4.089 21 N -0.320 5.320 22 C -0.068 4.068 23 H 0.037 0.963 24 H 0.099 0.901 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.164 0.836 40 H 0.076 0.924 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.505 -10.692 13.694 18.224 hybrid contribution 0.051 0.398 -0.416 0.578 sum 5.556 -10.293 13.278 17.695 Atomic orbital electron populations 1.21794 0.96227 1.02562 1.00515 1.21939 0.95998 0.92012 1.05261 1.21566 0.97617 0.96986 0.91840 1.21065 0.78858 0.84314 0.85594 1.90596 1.44135 1.26495 1.87217 1.48065 1.48715 1.30122 1.05936 1.22171 0.94429 0.86770 1.03726 1.18452 0.92908 0.91037 0.81474 0.98079 1.21836 0.97693 0.98499 1.00700 1.21616 0.93038 1.38591 1.04197 0.92299 1.25765 0.98156 0.95604 0.99140 1.70036 1.19527 1.43005 1.23237 0.85409 0.79358 0.77645 0.78617 1.18883 1.19715 1.21255 1.22551 0.91786 1.02703 0.98354 1.22998 0.93757 0.95515 0.96596 1.63609 1.02432 1.38731 1.27230 1.22775 0.94671 0.94674 0.94694 0.96262 0.90066 0.92580 0.89414 0.87485 0.91508 0.91932 0.88394 0.96272 0.91576 0.93412 0.92687 0.86449 0.93094 0.90721 0.90244 0.83618 0.92379 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.47 71.98 0.68 -3.10 16 2 C -0.11 -2.48 4.37 30.60 0.13 -2.35 16 3 C -0.08 -2.22 0.42 -52.03 -0.02 -2.24 16 4 C 0.51 22.25 5.24 87.66 0.46 22.71 16 5 O -0.60 -33.00 14.79 -3.05 -0.05 -33.05 16 6 N -0.60 -26.23 2.75 -826.80 -2.27 -28.50 16 7 C 0.07 2.29 7.57 127.77 0.97 3.26 16 8 C 0.26 14.32 2.63 44.24 0.12 14.44 16 9 H 0.00 0.08 6.91 -2.39 -0.02 0.06 16 10 C -0.13 -6.42 8.97 71.98 0.65 -5.77 16 11 C -0.54 -30.27 8.03 25.60 0.21 -30.07 16 12 H 0.06 3.24 7.25 -2.91 -0.02 3.22 16 13 C 0.01 0.71 5.30 84.66 0.45 1.16 16 14 N -0.92 -54.66 11.32 21.45 0.24 -54.42 16 15 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 16 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 19 C -0.12 -2.79 4.38 31.49 0.14 -2.65 16 20 C 0.04 0.85 7.48 86.42 0.65 1.49 16 21 N -0.69 -18.63 7.62 -500.45 -3.82 -22.45 16 22 C 0.06 1.73 5.19 86.45 0.45 2.17 16 23 H 0.02 0.61 7.48 -2.38 -0.02 0.59 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.35 7.02 -2.39 -0.02 1.33 16 26 H 0.09 1.83 4.52 -2.39 -0.01 1.82 16 27 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.85 7.06 -2.39 -0.02 1.83 16 29 H 0.06 2.19 6.97 -2.39 -0.02 2.18 16 30 H 0.10 2.46 3.69 -2.39 -0.01 2.45 16 31 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 33 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 34 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 35 H 0.12 1.85 7.23 -2.39 -0.02 1.83 16 36 H 0.05 1.55 7.12 -2.39 -0.02 1.53 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.35 7.28 8.92 -89.69 -0.80 6.48 16 40 H 0.06 2.10 6.92 -2.39 -0.02 2.09 16 41 H 0.08 1.57 7.70 -2.39 -0.02 1.56 16 Total: -1.00 -75.59 307.94 1.23 -74.36 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.23 Total: 18.63 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 4.87 Total: -0.94 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -5.85 Total: -105.37 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.05 Total: -33.05 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -75.59 1.23 -74.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.360 kcal (2) G-P(sol) polarization free energy of solvation -75.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds