Wall clock time and date at job start Mon Mar 30 2020 05:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46997 * 2 1 4 4 C 1.53000 * 109.47307 * 120.00073 * 2 1 3 5 5 C 1.50704 * 110.28535 * 66.91308 * 4 2 1 6 6 O 1.21282 * 120.00216 * 353.15956 * 5 4 2 7 7 N 1.34777 * 119.99435 * 173.15703 * 5 4 2 8 8 C 1.46491 * 120.00475 * 2.53138 * 7 5 4 9 9 C 1.46499 * 119.99335 * 182.52328 * 7 5 4 10 10 C 1.50701 * 109.47404 * 270.00042 * 9 7 5 11 11 H 1.08001 * 120.00155 * 0.02562 * 10 9 7 12 12 C 1.37883 * 119.99873 * 180.02562 * 10 9 7 13 13 N 1.31512 * 119.99622 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00187 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.46960 * 269.99695 * 14 12 10 16 16 H 1.48504 * 109.46994 * 29.99666 * 14 12 10 17 17 H 1.48501 * 109.47082 * 149.99779 * 14 12 10 18 18 C 1.54260 * 110.32141 * 189.03730 * 4 2 1 19 19 C 1.54383 * 105.05716 * 118.99869 * 18 4 2 20 20 N 1.48558 * 104.59488 * 23.85365 * 19 18 4 21 21 C 1.48827 * 104.23561 * 320.49008 * 20 19 18 22 22 H 1.08994 * 109.47200 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47131 * 300.00110 * 1 2 3 24 24 H 1.09002 * 109.47145 * 59.99614 * 1 2 3 25 25 H 1.09004 * 109.46755 * 240.00569 * 2 1 3 26 26 H 1.09004 * 109.47051 * 183.65868 * 3 2 1 27 27 H 1.09003 * 109.47271 * 303.65399 * 3 2 1 28 28 H 1.08999 * 109.47261 * 63.65576 * 3 2 1 29 29 H 1.09003 * 109.46912 * 297.61057 * 8 7 5 30 30 H 1.08999 * 109.47622 * 57.60923 * 8 7 5 31 31 H 1.09003 * 109.47318 * 177.61155 * 8 7 5 32 32 H 1.09005 * 109.46665 * 150.00202 * 9 7 5 33 33 H 1.08993 * 109.47568 * 30.00661 * 9 7 5 34 34 H 0.97004 * 119.99653 * 180.02562 * 13 12 10 35 35 H 1.08994 * 110.32250 * 237.89177 * 18 4 2 36 36 H 1.08998 * 110.32814 * 0.10829 * 18 4 2 37 37 H 1.09002 * 110.41307 * 142.62960 * 19 18 4 38 38 H 1.08999 * 110.41325 * 265.07636 * 19 18 4 39 39 H 1.00904 * 111.00016 * 200.96140 * 20 19 18 40 40 H 1.08999 * 110.44949 * 280.77692 * 21 20 19 41 41 H 1.09004 * 110.49622 * 158.24815 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6916 -2.1861 1.1856 6 8 0.9832 -2.6028 0.2938 7 7 2.1674 -3.0330 2.1199 8 6 2.9773 -2.5212 3.2282 9 6 1.8744 -4.4654 2.0272 10 6 0.5968 -4.7659 2.7677 11 1 0.0567 -3.9694 3.2581 12 6 0.1173 -6.0576 2.8192 13 7 -0.9979 -6.3197 3.4651 14 14 1.0517 -7.4353 1.9717 15 1 0.5676 -7.5755 0.5749 16 1 2.5023 -7.1174 1.9633 17 1 0.8282 -8.7081 2.7033 18 6 3.5655 -0.5389 1.3878 19 6 3.7613 0.1946 2.7321 20 7 2.5434 -0.1320 3.5175 21 6 1.4401 -0.0820 2.5199 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 3.1280 1.4432 -0.0656 27 1 1.6241 1.9749 -0.8554 28 1 1.7311 1.9371 0.9209 29 1 3.8906 -2.0748 2.8348 30 1 2.4105 -1.7674 3.7746 31 1 3.2334 -3.3407 3.8997 32 1 2.6931 -5.0330 2.4697 33 1 1.7621 -4.7463 0.9800 34 1 -1.3350 -7.2285 3.5016 35 1 4.0623 -1.5088 1.4100 36 1 3.9507 0.0660 0.5669 37 1 4.6519 -0.1747 3.2405 38 1 3.8328 1.2703 2.5713 39 1 2.3958 0.5427 4.2532 40 1 1.1493 0.9502 2.3251 41 1 0.5841 -0.6599 2.8683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232753692.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:17 Heat of formation + Delta-G solvation = -24.033637 kcal Electronic energy + Delta-G solvation = -20790.971968 eV Core-core repulsion = 17899.170914 eV Total energy + Delta-G solvation = -2891.801054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.07561 -38.84295 -37.01051 -35.31634 -34.51111 -31.31384 -30.39407 -29.43798 -27.87330 -26.91458 -24.84090 -23.86062 -22.23192 -21.13816 -19.19538 -19.13625 -18.06568 -17.29452 -16.87808 -16.53350 -16.18274 -15.84284 -15.20429 -14.69380 -14.47387 -14.45656 -14.14978 -13.69849 -13.58159 -13.33730 -13.27754 -12.90272 -12.84064 -12.58996 -12.51638 -12.50085 -12.19803 -12.09133 -11.96663 -11.84223 -11.74391 -11.41721 -11.30196 -10.84666 -10.25318 -9.59316 -8.69380 -8.35344 -6.39358 1.28522 1.32754 1.41838 1.87106 2.28872 2.47736 2.98316 3.27455 3.55004 3.66040 3.77025 4.03692 4.17290 4.30516 4.45569 4.47985 4.53176 4.68144 4.75310 4.76491 4.76599 4.82480 4.86151 4.92706 4.96712 5.05018 5.08317 5.16616 5.21742 5.34410 5.45203 5.47155 5.58362 5.64372 5.73392 5.92983 6.26968 6.47739 6.60814 6.87490 7.21458 7.55261 8.81976 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.028463 B = 0.006951 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.506473 B = 4026.960530 C = 4362.586395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.068 4.068 5 C 0.503 3.497 6 O -0.597 6.597 7 N -0.597 5.597 8 C 0.027 3.973 9 C 0.223 3.777 10 C -0.530 4.530 11 H 0.025 0.975 12 C 0.009 3.991 13 N -0.946 5.946 14 Si 0.949 3.051 15 H -0.276 1.276 16 H -0.243 1.243 17 H -0.271 1.271 18 C -0.125 4.125 19 C 0.043 3.957 20 N -0.658 5.658 21 C 0.054 3.946 22 H 0.032 0.968 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.148 0.852 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.012 0.988 34 H 0.268 0.732 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.350 0.650 40 H 0.086 0.914 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.254 18.688 -2.293 23.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.086 4.086 3 C -0.196 4.196 4 C -0.072 4.072 5 C 0.292 3.708 6 O -0.479 6.479 7 N -0.326 5.326 8 C -0.114 4.114 9 C 0.100 3.900 10 C -0.569 4.569 11 H 0.044 0.956 12 C -0.188 4.188 13 N -0.586 5.586 14 Si 0.772 3.228 15 H -0.202 1.202 16 H -0.166 1.166 17 H -0.196 1.196 18 C -0.162 4.162 19 C -0.085 4.085 20 N -0.289 5.289 21 C -0.075 4.075 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.164 0.836 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.169 0.831 40 H 0.104 0.896 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.898 17.607 -2.597 21.979 hybrid contribution -0.710 -0.623 -0.394 1.023 sum 12.188 16.984 -2.991 21.117 Atomic orbital electron populations 1.21936 0.95915 1.01336 1.01823 1.20874 0.95625 0.97067 0.95040 1.21942 1.01935 0.92900 1.02801 1.21511 0.98558 0.89418 0.97687 1.21149 0.79179 0.89465 0.81006 1.90577 1.39527 1.79539 1.38285 1.47932 1.51156 1.07267 1.26261 1.23915 0.97386 1.01182 0.88916 1.19318 0.95004 0.80045 0.95659 1.21540 1.08159 0.94078 1.33126 0.95624 1.25871 0.95835 1.01527 0.95616 1.70054 1.22806 1.21451 1.44290 0.85694 0.80450 0.78182 0.78482 1.20153 1.16605 1.19559 1.22793 0.91654 1.01880 0.99904 1.23041 0.93919 0.99506 0.92028 1.64036 1.02847 1.50838 1.11132 1.22907 0.94460 1.00157 0.89971 0.94851 0.92261 0.91681 0.92589 0.90625 0.91575 0.91410 0.89978 0.83571 0.94416 0.94107 0.97003 0.92276 0.91488 0.87987 0.88097 0.90584 0.83145 0.89581 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 8.66 71.98 0.62 -3.99 16 2 C -0.07 -1.76 1.92 -10.79 -0.02 -1.78 16 3 C -0.14 -2.23 8.58 71.98 0.62 -1.61 16 4 C -0.07 -1.96 0.39 -52.03 -0.02 -1.98 16 5 C 0.50 21.86 6.11 87.66 0.54 22.39 16 6 O -0.60 -31.71 13.62 -3.03 -0.04 -31.75 16 7 N -0.60 -26.74 2.77 -851.15 -2.35 -29.10 16 8 C 0.03 0.93 8.35 127.77 1.07 2.00 16 9 C 0.22 11.85 4.17 85.63 0.36 12.21 16 10 C -0.53 -33.34 9.94 25.60 0.25 -33.09 16 11 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 12 C 0.01 0.57 5.47 84.66 0.46 1.03 16 13 N -0.95 -62.17 13.96 21.45 0.30 -61.87 16 14 Si 0.95 46.95 27.47 68.60 1.88 48.83 16 15 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 16 H -0.24 -10.96 6.54 99.48 0.65 -10.31 16 17 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 18 C -0.12 -2.58 4.94 31.49 0.16 -2.42 16 19 C 0.04 0.61 6.42 86.45 0.56 1.17 16 20 N -0.66 -12.62 3.86 -500.20 -1.93 -14.55 16 21 C 0.05 1.35 4.61 86.40 0.40 1.75 16 22 H 0.03 1.35 5.95 -2.39 -0.01 1.33 16 23 H 0.06 1.59 6.80 -2.38 -0.02 1.57 16 24 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.06 1.70 8.04 -2.38 -0.02 1.68 16 26 H 0.07 0.96 6.14 -2.38 -0.01 0.94 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.92 6.27 -2.39 -0.01 0.91 16 29 H 0.08 2.22 3.90 -2.39 -0.01 2.21 16 30 H 0.15 4.77 4.08 -57.74 -0.24 4.54 16 31 H 0.04 1.36 7.81 -2.39 -0.02 1.34 16 32 H 0.04 2.04 7.00 -2.38 -0.02 2.02 16 33 H 0.01 0.68 6.89 -2.39 -0.02 0.66 16 34 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 35 H 0.07 1.65 5.56 -2.39 -0.01 1.64 16 36 H 0.10 1.63 5.78 -2.39 -0.01 1.61 16 37 H 0.10 1.20 7.81 -2.39 -0.02 1.19 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.35 4.78 8.92 -89.69 -0.80 3.98 16 40 H 0.09 1.62 5.54 -2.39 -0.01 1.61 16 41 H 0.05 1.59 7.85 -2.39 -0.02 1.57 16 Total: -1.00 -81.39 297.14 2.80 -78.59 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -0.04 Total: 14.18 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 4.99 Total: -4.33 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -3.99 Total: -105.51 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.04 Total: -31.75 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.88 Total: 48.83 kcal Total: -81.39 2.80 -78.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232753692.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.555 kcal (2) G-P(sol) polarization free energy of solvation -81.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds