Wall clock time and date at job start Mon Mar 30 2020 04:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48505 * 109.46964 * 270.00287 * 3 2 1 5 5 H 1.48499 * 109.47045 * 30.00243 * 3 2 1 6 6 H 1.48495 * 109.46904 * 150.00531 * 3 2 1 7 7 C 1.37873 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00129 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00186 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47319 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.47150 * 64.99949 * 12 11 10 14 14 C 1.46900 * 111.00154 * 180.02562 * 13 12 11 15 15 H 1.09007 * 110.65052 * 34.29912 * 14 13 12 16 16 C 1.55159 * 110.72982 * 271.13667 * 14 13 12 17 17 C 1.54843 * 101.65727 * 205.49476 * 16 14 13 18 18 N 1.47950 * 105.06607 * 36.66730 * 17 16 14 19 19 C 1.47953 * 109.40911 * 219.20970 * 18 17 16 20 20 C 1.54837 * 105.06604 * 140.79301 * 19 18 17 21 21 C 1.55153 * 101.65988 * 323.32822 * 20 19 18 22 22 C 1.48143 * 108.41243 * 337.03333 * 18 17 16 23 23 H 1.08998 * 110.74484 * 120.45232 * 22 18 17 24 24 H 0.96998 * 119.99585 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47017 * 60.00460 * 9 7 2 26 26 H 1.08999 * 109.47472 * 300.00137 * 9 7 2 27 27 H 1.09002 * 109.47259 * 300.00293 * 11 10 9 28 28 H 1.09001 * 109.47074 * 60.00315 * 11 10 9 29 29 H 1.09001 * 109.47630 * 185.00204 * 12 11 10 30 30 H 1.09004 * 109.47346 * 305.00335 * 12 11 10 31 31 H 1.00895 * 111.00168 * 303.95574 * 13 12 11 32 32 H 1.09000 * 110.99093 * 323.57865 * 16 14 13 33 33 H 1.08996 * 110.99694 * 87.36603 * 16 14 13 34 34 H 1.09000 * 110.32461 * 155.57123 * 17 16 14 35 35 H 1.09005 * 110.31926 * 277.67081 * 17 16 14 36 36 H 1.08993 * 110.32712 * 259.69414 * 19 18 17 37 37 H 1.09003 * 110.31932 * 21.89720 * 19 18 17 38 38 H 1.09001 * 110.98582 * 81.42120 * 20 19 18 39 39 H 1.09001 * 110.98955 * 205.19764 * 20 19 18 40 40 H 1.09003 * 110.73637 * 154.50352 * 21 20 19 41 41 H 1.08994 * 110.73683 * 277.80745 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 7 3.4079 -5.8872 1.2559 14 6 4.4594 -6.9125 1.2918 15 1 4.8670 -7.0801 0.2948 16 6 3.9159 -8.2358 1.8925 17 6 5.2094 -8.8829 2.4454 18 7 6.0136 -7.7537 2.9624 19 6 7.4404 -7.9793 2.6424 20 6 7.9906 -6.5855 2.2523 21 6 6.7823 -5.9717 1.4969 22 6 5.5755 -6.5152 2.2778 23 1 5.2110 -5.7837 2.9991 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 0.9451 -4.9822 0.8903 28 1 0.9446 -4.9827 -0.8897 29 1 2.1819 -6.9376 -0.0885 30 1 3.3216 -5.7961 -0.8412 31 1 3.7965 -4.9663 1.3932 32 1 3.2049 -8.0375 2.6945 33 1 3.4660 -8.8596 1.1201 34 1 4.9708 -9.5777 3.2506 35 1 5.7456 -9.3979 1.6483 36 1 7.9680 -8.3638 3.5152 37 1 7.5359 -8.6716 1.8059 38 1 8.2351 -6.0002 3.1387 39 1 8.8563 -6.6771 1.5963 40 1 6.8118 -4.8830 1.5417 41 1 6.7585 -6.3157 0.4629 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385873429.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:35 Heat of formation + Delta-G solvation = -69.561514 kcal Electronic energy + Delta-G solvation = -19025.853793 eV Core-core repulsion = 16132.078502 eV Total energy + Delta-G solvation = -2893.775291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.12082 -38.82845 -36.67065 -34.93954 -34.19856 -31.91737 -29.73827 -28.91597 -28.32500 -25.36358 -24.53252 -22.97460 -22.40535 -21.34374 -20.81370 -18.64353 -17.71715 -17.36897 -16.98487 -16.68837 -16.35085 -16.06861 -15.30885 -15.26092 -14.98071 -14.45129 -14.19064 -13.95922 -13.63154 -13.31220 -13.23198 -12.97173 -12.76537 -12.66215 -12.48844 -12.38198 -12.25225 -12.05242 -11.85097 -11.75914 -11.61916 -11.39181 -11.28598 -10.87802 -10.24607 -9.42579 -9.38869 -8.32619 -6.45234 1.39839 1.42702 1.54747 2.34212 2.93997 3.01440 3.17337 3.21970 3.46759 3.61797 3.88267 4.03395 4.15595 4.19890 4.23741 4.31229 4.36303 4.45809 4.51333 4.55577 4.65964 4.77438 4.84626 4.88194 4.89875 4.91194 4.96764 4.99133 5.05379 5.13649 5.17621 5.25817 5.29446 5.53981 5.90388 5.94846 6.03267 6.12394 6.34190 6.52029 6.80368 7.26788 8.79847 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.027228 B = 0.004059 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.099219 B = 6896.174945 C = 7710.082766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.548 4.548 8 H 0.063 0.937 9 C 0.211 3.789 10 O -0.408 6.408 11 C 0.055 3.945 12 C 0.078 3.922 13 N -0.684 5.684 14 C 0.070 3.930 15 H 0.053 0.947 16 C -0.117 4.117 17 C 0.036 3.964 18 N -0.521 5.521 19 C 0.031 3.969 20 C -0.126 4.126 21 C -0.142 4.142 22 C 0.060 3.940 23 H 0.080 0.920 24 H 0.271 0.729 25 H -0.015 1.015 26 H -0.016 1.016 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.103 0.897 30 H 0.033 0.967 31 H 0.344 0.656 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.507 -17.818 2.674 22.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.136 3.864 10 O -0.328 6.328 11 C -0.023 4.023 12 C -0.051 4.051 13 N -0.316 5.316 14 C -0.041 4.041 15 H 0.071 0.929 16 C -0.156 4.156 17 C -0.092 4.092 18 N -0.246 5.246 19 C -0.097 4.097 20 C -0.164 4.164 21 C -0.181 4.181 22 C -0.049 4.049 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.051 0.949 31 H 0.163 0.837 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.026 -18.037 3.616 22.541 hybrid contribution 0.194 1.213 -1.502 1.940 sum 13.220 -16.824 2.115 21.501 Atomic orbital electron populations 1.70075 1.07815 1.28660 1.50493 1.25968 0.95942 1.03419 0.93888 0.85178 0.78386 0.76994 0.78825 1.19264 1.19973 1.18803 1.21385 0.94111 0.90793 1.52261 0.91910 1.19795 0.88579 0.84633 0.93371 1.87745 1.35536 1.14339 1.95214 1.22595 0.96055 0.83857 0.99759 1.21929 0.94963 0.97707 0.90511 1.60565 1.27210 1.08576 1.35236 1.22947 0.90797 0.93064 0.97279 0.92891 1.22777 0.97518 0.94693 1.00621 1.23298 0.93464 0.93555 0.98906 1.65592 1.03784 1.01979 1.53210 1.23374 0.88452 0.97245 1.00634 1.22740 0.97474 0.95698 1.00440 1.22851 0.94883 1.01285 0.99092 1.23030 0.94285 0.93367 0.94239 0.90227 0.92041 0.99714 0.99797 0.93923 0.93275 0.87940 0.94879 0.83723 0.91082 0.89962 0.89411 0.92109 0.89395 0.92325 0.90842 0.89251 0.91119 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.98 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.55 -32.84 9.43 25.60 0.24 -32.59 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.21 12.04 5.69 71.24 0.41 12.44 16 10 O -0.41 -19.94 9.85 -148.98 -1.47 -21.40 16 11 C 0.05 2.06 6.28 71.98 0.45 2.51 16 12 C 0.08 2.30 5.98 86.30 0.52 2.82 16 13 N -0.68 -20.33 6.33 -485.76 -3.08 -23.41 16 14 C 0.07 1.67 2.77 46.04 0.13 1.80 16 15 H 0.05 1.24 7.03 -2.38 -0.02 1.22 16 16 C -0.12 -2.42 6.74 31.96 0.22 -2.21 16 17 C 0.04 0.65 6.72 86.73 0.58 1.23 16 18 N -0.52 -11.09 5.77 -851.06 -4.91 -16.00 16 19 C 0.03 0.51 6.72 86.73 0.58 1.09 16 20 C -0.13 -2.09 7.07 31.96 0.23 -1.86 16 21 C -0.14 -2.96 6.46 31.56 0.20 -2.75 16 22 C 0.06 1.41 3.54 45.29 0.16 1.57 16 23 H 0.08 2.24 7.97 -2.39 -0.02 2.22 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 26 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.03 0.98 8.08 -2.39 -0.02 0.96 16 31 H 0.34 11.69 7.95 -89.70 -0.71 10.98 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 0.94 7.08 -2.38 -0.02 0.92 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 0.86 7.08 -2.39 -0.02 0.84 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.41 7.31 -2.39 -0.02 1.39 16 Total: -1.00 -65.43 325.28 -2.69 -68.12 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.27 Total: 17.48 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 4.18 Total: -15.13 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -7.70 Total: -95.59 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -1.47 Total: -21.40 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -65.43 -2.69 -68.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385873429.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.437 kcal (2) G-P(sol) polarization free energy of solvation -65.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds