Wall clock time and date at job start Mon Mar 30 2020 04:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99643 * 2 1 4 4 H 1.48497 * 109.46949 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47237 * 300.00364 * 3 2 1 6 6 H 1.48500 * 109.47102 * 60.00651 * 3 2 1 7 7 C 1.37875 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00286 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99760 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46637 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46983 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47223 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99887 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00019 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99771 * 179.72446 * 13 12 11 16 16 H 1.09000 * 109.47292 * 300.27191 * 15 13 12 17 17 C 1.53004 * 109.47193 * 60.27565 * 15 13 12 18 18 N 1.46897 * 109.47098 * 184.95305 * 17 15 13 19 19 C 1.52996 * 109.47012 * 180.27330 * 15 13 12 20 20 C 1.53006 * 109.47092 * 65.94432 * 19 15 13 21 21 C 1.53011 * 117.49544 * 243.29159 * 20 19 15 22 22 C 1.53001 * 117.49937 * 174.66902 * 20 19 15 23 23 H 0.97001 * 120.00219 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47331 * 60.00783 * 9 7 2 25 25 H 1.08994 * 109.47251 * 300.00207 * 9 7 2 26 26 H 1.09002 * 109.47368 * 60.00566 * 10 9 7 27 27 H 1.08994 * 109.47146 * 299.99876 * 10 9 7 28 28 H 1.08999 * 109.47213 * 59.99499 * 11 10 9 29 29 H 1.09002 * 109.46887 * 300.00486 * 11 10 9 30 30 H 0.96997 * 119.99943 * 0.02562 * 12 11 10 31 31 H 1.08997 * 109.47156 * 304.95407 * 17 15 13 32 32 H 1.09005 * 109.47001 * 64.95408 * 17 15 13 33 33 H 1.00897 * 111.00209 * 56.04502 * 18 17 15 34 34 H 1.00898 * 110.99905 * 180.02562 * 18 17 15 35 35 H 1.09003 * 109.47183 * 185.93788 * 19 15 13 36 36 H 1.08999 * 109.47803 * 305.94030 * 19 15 13 37 37 H 1.08995 * 115.55041 * 28.99148 * 20 19 15 38 38 H 1.08994 * 117.49656 * 359.97438 * 21 20 19 39 39 H 1.08999 * 117.49887 * 145.01767 * 21 20 19 40 40 H 1.09002 * 117.49699 * 214.97463 * 22 20 19 41 41 H 1.09003 * 117.49904 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 7 2.4325 -6.1006 -0.0006 13 6 1.9833 -7.3712 -0.0015 14 8 0.7909 -7.5929 -0.0024 15 6 2.9626 -8.5166 -0.0071 16 1 3.5894 -8.4544 -0.8967 17 6 3.8421 -8.4419 1.2427 18 7 4.8729 -9.4865 1.1793 19 6 2.1977 -9.8416 -0.0140 20 6 1.4337 -9.9826 -1.3321 21 6 -0.0938 -10.0372 -1.2609 22 6 0.7026 -11.3023 -1.5872 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5568 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6043 0.8895 27 1 2.8721 -3.6042 -0.8905 28 1 0.8541 -5.0446 -0.8913 29 1 0.8535 -5.0451 0.8886 30 1 3.3862 -5.9233 0.0005 31 1 4.3192 -7.4632 1.2933 32 1 3.2265 -8.5923 2.1296 33 1 5.4161 -9.4076 0.3327 34 1 5.4669 -9.4583 1.9944 35 1 2.9013 -10.6679 0.0883 36 1 1.4935 -9.8590 0.8178 37 1 1.8802 -9.4805 -2.1903 38 1 -0.5542 -9.9730 -0.2750 39 1 -0.6524 -9.5708 -2.0723 40 1 0.6678 -11.6681 -2.6134 41 1 0.7663 -12.0701 -0.8162 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404593805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:23 Heat of formation + Delta-G solvation = -42.531089 kcal Electronic energy + Delta-G solvation = -18600.488786 eV Core-core repulsion = 15707.885623 eV Total energy + Delta-G solvation = -2892.603164 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.94329 -37.37289 -35.64841 -35.32549 -33.27599 -31.49424 -30.88406 -27.14319 -25.79142 -23.46719 -22.28803 -22.06044 -20.67727 -20.56519 -19.53678 -17.35986 -16.48627 -15.99164 -15.69442 -15.41274 -14.84535 -14.67423 -14.50946 -14.37249 -13.77451 -13.50244 -13.13188 -12.49351 -12.28008 -12.02051 -11.82320 -11.67600 -11.47069 -11.31522 -11.02178 -10.93105 -10.74975 -10.58743 -10.13161 -9.97695 -9.88486 -9.66566 -9.29739 -9.11011 -8.99943 -8.72381 -8.39497 -6.03835 -4.07054 2.82427 3.28165 3.35523 3.38405 3.43210 3.92111 4.24960 4.42488 4.49988 4.73306 4.87890 4.97672 5.10409 5.14731 5.21493 5.31959 5.40624 5.57642 5.65586 5.70245 5.77172 5.79760 5.99233 6.07725 6.09204 6.15713 6.24622 6.38801 6.51583 6.58600 6.73156 6.83486 6.99393 7.07009 7.61699 7.74179 7.75117 7.94962 8.35638 8.46723 8.99869 9.57293 11.07459 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030965 B = 0.003506 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.039330 B = 7983.393111 C = 8697.917463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.117 3.883 12 N -0.729 5.729 13 C 0.508 3.492 14 O -0.528 6.528 15 C -0.103 4.103 16 H 0.092 0.908 17 C 0.069 3.931 18 N -0.847 5.847 19 C -0.060 4.060 20 C -0.144 4.144 21 C -0.153 4.153 22 C -0.193 4.193 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.395 0.605 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.341 0.659 34 H 0.344 0.656 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.568 -20.120 -0.096 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.006 4.006 12 N -0.381 5.381 13 C 0.293 3.707 14 O -0.403 6.403 15 C -0.125 4.125 16 H 0.110 0.890 17 C -0.062 4.062 18 N -0.377 5.377 19 C -0.098 4.098 20 C -0.162 4.162 21 C -0.190 4.190 22 C -0.230 4.230 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.228 0.772 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.907 -20.656 -0.086 21.781 hybrid contribution 1.575 2.032 -0.087 2.572 sum 8.482 -18.624 -0.173 20.465 Atomic orbital electron populations 1.69979 1.06055 1.26592 1.50617 1.25036 0.94862 0.99323 0.95277 0.86527 0.80025 0.83759 0.77624 1.19776 1.20982 1.20981 1.21240 0.93002 0.90956 1.50847 0.92634 1.19033 0.93857 0.90884 0.97646 1.21881 0.99739 0.93503 1.00718 1.21608 0.91900 0.85179 1.01871 1.46273 1.10513 1.06106 1.75166 1.20507 0.89770 0.83805 0.76622 1.90705 1.16530 1.84538 1.48550 1.21420 0.96696 0.94908 0.99492 0.88971 1.21735 0.93754 0.92900 0.97853 1.58666 1.19654 1.51532 1.07841 1.20914 0.97967 0.94976 0.95915 1.22166 0.95028 1.00152 0.98867 1.22814 0.93876 0.99502 1.02831 1.23009 1.06488 0.91657 1.01858 0.92964 0.96282 0.96291 0.92857 0.92848 0.91886 0.91897 0.77189 0.94776 0.90331 0.84681 0.84303 0.89966 0.91390 0.88847 0.88771 0.89596 0.89471 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16 12 N -0.73 -10.12 5.42 -60.29 -0.33 -10.45 16 13 C 0.51 7.15 6.91 -10.99 -0.08 7.08 16 14 O -0.53 -9.31 14.03 5.56 0.08 -9.23 16 15 C -0.10 -1.05 2.29 -91.77 -0.21 -1.26 16 16 H 0.09 0.82 8.13 -51.93 -0.42 0.40 16 17 C 0.07 0.59 6.12 -3.82 -0.02 0.57 16 18 N -0.85 -5.77 8.98 -10.37 -0.09 -5.86 16 19 C -0.06 -0.65 4.56 -26.73 -0.12 -0.77 16 20 C -0.14 -1.66 4.77 -90.61 -0.43 -2.09 16 21 C -0.15 -1.91 8.97 -26.72 -0.24 -2.15 16 22 C -0.19 -1.99 10.25 -26.73 -0.27 -2.26 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.39 4.44 7.84 -40.82 -0.32 4.12 16 31 H 0.03 0.27 7.44 -51.93 -0.39 -0.11 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.34 1.90 8.99 -39.29 -0.35 1.55 16 34 H 0.34 1.87 9.08 -39.29 -0.36 1.51 16 35 H 0.08 0.82 7.59 -51.93 -0.39 0.42 16 36 H 0.07 0.84 7.65 -51.93 -0.40 0.45 16 37 H 0.09 1.08 8.06 -51.93 -0.42 0.67 16 38 H 0.09 1.26 8.03 -51.93 -0.42 0.84 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 337.23 15.07 5.08 5.08 Total: -1.00 -31.58 337.23 -8.87 -40.45 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.24 Total: 3.93 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -2.09 Total: -14.26 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.32 Total: -42.39 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.58 -8.87 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404593805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.077 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds