Wall clock time and date at job start Mon Mar 30 2020 04:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47352 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99901 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00338 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 H 1.08991 * 109.46182 * 64.97665 * 16 15 14 18 18 C 1.53038 * 109.46396 * 184.94767 * 16 15 14 19 19 C 1.53114 * 109.27895 * 179.19084 * 18 16 15 20 20 C 1.53119 * 109.16413 * 302.35028 * 19 18 16 21 21 C 1.53034 * 109.27872 * 57.64914 * 20 19 18 22 22 N 1.46845 * 109.52652 * 300.82198 * 21 20 19 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 27 27 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 28 28 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 29 29 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 30 30 H 0.97001 * 119.99493 * 0.02562 * 14 12 11 31 31 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 32 32 H 1.08998 * 109.46734 * 60.00204 * 15 14 12 33 33 H 1.08995 * 109.50040 * 299.13969 * 18 16 15 34 34 H 1.09003 * 109.50042 * 59.25242 * 18 16 15 35 35 H 1.09005 * 109.52202 * 182.43895 * 19 18 16 36 36 H 1.09002 * 109.57152 * 62.28652 * 19 18 16 37 37 H 1.09002 * 109.49794 * 297.70821 * 20 19 18 38 38 H 1.09004 * 109.50466 * 177.59968 * 20 19 18 39 39 H 1.09002 * 109.46033 * 180.80745 * 21 20 19 40 40 H 1.08996 * 109.45960 * 60.84434 * 21 20 19 41 41 H 1.00897 * 110.99877 * 297.64931 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4595 -6.1326 -0.0005 13 8 3.6519 -5.9110 -0.0001 14 7 2.0103 -7.4033 -0.0004 15 6 2.9622 -8.5168 -0.0004 16 6 2.1972 -9.8418 -0.0009 17 1 1.6395 -9.9388 -0.9323 18 6 3.1872 -11.0022 0.1236 19 6 2.4159 -12.3248 0.1430 20 6 1.4175 -12.3075 1.3037 21 6 0.4789 -11.1092 1.1450 22 7 1.2645 -9.8686 1.1330 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8719 -3.6044 -0.8906 27 1 2.8719 -3.6044 0.8894 28 1 0.8533 -5.0451 0.8886 29 1 0.8539 -5.0446 -0.8913 30 1 1.0566 -7.5805 -0.0011 31 1 3.5888 -8.4591 -0.8904 32 1 3.5888 -8.4590 0.8896 33 1 3.8695 -10.9912 -0.7263 34 1 3.7550 -10.8985 1.0483 35 1 3.1139 -13.1516 0.2751 36 1 1.8789 -12.4482 -0.7975 37 1 1.9575 -12.2244 2.2469 38 1 0.8355 -13.2291 1.2970 39 1 -0.2242 -11.0858 1.9777 40 1 -0.0708 -11.2002 0.2083 41 1 1.7534 -9.7418 2.0065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594426582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:11 Heat of formation + Delta-G solvation = -73.826365 kcal Electronic energy + Delta-G solvation = -18393.554055 eV Core-core repulsion = 15499.593826 eV Total energy + Delta-G solvation = -2893.960229 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80570 -38.82016 -34.82061 -34.04776 -32.10578 -32.02454 -31.46758 -28.10869 -26.21642 -23.93384 -23.41131 -21.81734 -20.93622 -20.34220 -19.56939 -16.91619 -16.06691 -16.00413 -15.90911 -15.27154 -15.07307 -15.03675 -14.48604 -14.35616 -13.63379 -13.48089 -12.99769 -12.76172 -12.44524 -12.21378 -12.15541 -11.78598 -11.63142 -11.52516 -11.21769 -11.06771 -10.85026 -10.72904 -10.54645 -10.49059 -9.59331 -9.58626 -9.19235 -8.96165 -8.85163 -8.70992 -8.26516 -5.92529 -3.93685 3.07375 3.40163 3.40176 3.43255 3.47607 3.86988 4.31201 4.39974 4.53276 4.53997 4.68423 4.83566 4.94142 5.03742 5.22721 5.33745 5.38527 5.43285 5.43923 5.52645 5.58386 5.64340 5.65283 5.75720 5.83782 5.85767 5.89687 6.37555 6.57394 6.70836 6.82114 7.01101 7.02593 7.24739 7.76764 7.82898 7.91288 8.08906 8.53000 8.62223 9.13379 9.69819 11.19012 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.059758 B = 0.002907 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.443975 B = 9630.123262 C = 9963.866107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.138 4.138 12 C 0.510 3.490 13 O -0.545 6.545 14 N -0.729 5.729 15 C 0.127 3.873 16 C 0.076 3.924 17 H 0.088 0.912 18 C -0.151 4.151 19 C -0.119 4.119 20 C -0.160 4.160 21 C 0.057 3.943 22 N -0.680 5.680 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.406 0.594 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 -26.768 1.180 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.214 1.214 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.298 3.702 13 O -0.422 6.422 14 N -0.382 5.382 15 C 0.002 3.998 16 C -0.035 4.035 17 H 0.106 0.894 18 C -0.191 4.191 19 C -0.156 4.156 20 C -0.199 4.199 21 C -0.072 4.072 22 N -0.309 5.309 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.242 0.758 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.044 -26.103 0.851 26.138 hybrid contribution 0.669 0.026 0.316 0.740 sum 1.713 -26.078 1.167 26.160 Atomic orbital electron populations 1.69958 1.06025 1.26586 1.51242 1.25024 0.94855 0.99210 0.95451 0.86654 0.79564 0.83104 0.78661 1.21360 1.20246 1.20254 1.21255 0.93155 0.91080 1.50102 0.92652 1.19130 0.93986 0.91450 0.97102 1.21433 0.98593 0.91656 1.01573 1.21815 0.98151 0.94091 1.03691 1.21250 0.90279 0.83897 0.74751 1.90663 1.17437 1.84895 1.49228 1.45966 1.10487 1.05115 1.76671 1.21265 0.91791 0.84602 1.02101 1.21844 0.92684 0.93321 0.95631 0.89435 1.22202 0.98657 0.95237 1.02956 1.21540 0.98100 0.97190 0.98797 1.22278 0.98668 1.00192 0.98747 1.22019 0.95556 0.86873 1.02778 1.60623 1.28221 1.35830 1.06228 0.93051 0.96614 0.96627 0.92818 0.92794 0.89406 0.89510 0.75847 0.91361 0.92005 0.90975 0.91578 0.91901 0.91774 0.91987 0.91472 0.90508 0.90837 0.83822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -15.30 9.11 -34.44 -0.31 -15.61 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.09 -2.12 4.44 -26.73 -0.12 -2.23 16 11 C -0.14 -2.39 5.70 -27.88 -0.16 -2.55 16 12 C 0.51 8.57 7.83 -10.99 -0.09 8.49 16 13 O -0.55 -11.34 15.98 5.56 0.09 -11.25 16 14 N -0.73 -9.02 5.39 -60.30 -0.32 -9.35 16 15 C 0.13 1.35 5.32 -4.04 -0.02 1.33 16 16 C 0.08 0.58 2.58 -67.72 -0.17 0.40 16 17 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 18 C -0.15 -0.99 5.36 -26.65 -0.14 -1.13 16 19 C -0.12 -0.69 6.00 -26.61 -0.16 -0.85 16 20 C -0.16 -0.88 6.08 -26.65 -0.16 -1.04 16 21 C 0.06 0.35 6.55 -3.84 -0.03 0.33 16 22 N -0.68 -5.05 5.94 -106.76 -0.63 -5.69 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 27 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.41 4.30 8.14 -40.82 -0.33 3.96 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.34 2.57 8.79 -39.29 -0.35 2.23 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -33.14 332.17 -9.15 -42.29 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -7.40 Total: -0.61 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -1.60 Total: -10.93 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.22 Total: -41.84 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.14 -9.15 -42.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594426582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.539 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds