Wall clock time and date at job start Mon Mar 30 2020 04:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47352 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99901 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00338 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 H 1.08991 * 109.46182 * 64.97665 * 16 15 14 18 18 C 1.53038 * 109.46396 * 184.94767 * 16 15 14 19 19 C 1.53114 * 109.27895 * 179.19084 * 18 16 15 20 20 C 1.53119 * 109.16413 * 302.35028 * 19 18 16 21 21 C 1.53034 * 109.27872 * 57.64914 * 20 19 18 22 22 N 1.46845 * 109.52652 * 300.82198 * 21 20 19 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 27 27 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 28 28 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 29 29 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 30 30 H 0.97001 * 119.99493 * 0.02562 * 14 12 11 31 31 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 32 32 H 1.08998 * 109.46734 * 60.00204 * 15 14 12 33 33 H 1.08995 * 109.50040 * 299.13969 * 18 16 15 34 34 H 1.09003 * 109.50042 * 59.25242 * 18 16 15 35 35 H 1.09005 * 109.52202 * 182.43895 * 19 18 16 36 36 H 1.09002 * 109.57152 * 62.28652 * 19 18 16 37 37 H 1.09002 * 109.49794 * 297.70821 * 20 19 18 38 38 H 1.09004 * 109.50466 * 177.59968 * 20 19 18 39 39 H 1.09002 * 109.46033 * 180.80745 * 21 20 19 40 40 H 1.08996 * 109.45960 * 60.84434 * 21 20 19 41 41 H 1.00897 * 110.99877 * 297.64931 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4595 -6.1326 -0.0005 13 8 3.6519 -5.9110 -0.0001 14 7 2.0103 -7.4033 -0.0004 15 6 2.9622 -8.5168 -0.0004 16 6 2.1972 -9.8418 -0.0009 17 1 1.6395 -9.9388 -0.9323 18 6 3.1872 -11.0022 0.1236 19 6 2.4159 -12.3248 0.1430 20 6 1.4175 -12.3075 1.3037 21 6 0.4789 -11.1092 1.1450 22 7 1.2645 -9.8686 1.1330 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8719 -3.6044 -0.8906 27 1 2.8719 -3.6044 0.8894 28 1 0.8533 -5.0451 0.8886 29 1 0.8539 -5.0446 -0.8913 30 1 1.0566 -7.5805 -0.0011 31 1 3.5888 -8.4591 -0.8904 32 1 3.5888 -8.4590 0.8896 33 1 3.8695 -10.9912 -0.7263 34 1 3.7550 -10.8985 1.0483 35 1 3.1139 -13.1516 0.2751 36 1 1.8789 -12.4482 -0.7975 37 1 1.9575 -12.2244 2.2469 38 1 0.8355 -13.2291 1.2970 39 1 -0.2242 -11.0858 1.9777 40 1 -0.0708 -11.2002 0.2083 41 1 1.7534 -9.7418 2.0065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594426582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:11 Heat of formation + Delta-G solvation = -96.958979 kcal Electronic energy + Delta-G solvation = -18394.557160 eV Core-core repulsion = 15499.593826 eV Total energy + Delta-G solvation = -2894.963334 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.84218 -39.72374 -36.20868 -35.69121 -34.00979 -32.61893 -32.34369 -29.82182 -27.34129 -25.48721 -24.21744 -22.64998 -22.12315 -21.43773 -20.91836 -18.60633 -17.76492 -17.02604 -16.92273 -16.48233 -16.21903 -16.01863 -15.63422 -15.06659 -14.94594 -14.71960 -14.19710 -13.87275 -13.81756 -13.59906 -13.09251 -13.00527 -12.86407 -12.56713 -12.48854 -12.40486 -12.19300 -12.08655 -11.58492 -11.52988 -11.44094 -11.37101 -11.25864 -10.71491 -10.52837 -9.99149 -9.28765 -8.18877 -6.29000 1.40151 1.43442 1.51503 1.72996 2.29883 2.43693 3.13792 3.24834 3.69831 3.88420 3.97186 4.04301 4.15967 4.25957 4.29118 4.32344 4.34042 4.50475 4.69444 4.73804 4.83799 4.88269 4.92102 5.00625 5.04878 5.09784 5.14287 5.16860 5.19996 5.21729 5.39521 5.52504 5.58004 5.77663 5.88645 6.08335 6.29172 6.42860 6.68344 6.86434 7.36761 7.39715 8.92582 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.059758 B = 0.002907 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.443975 B = 9630.123262 C = 9963.866107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.278 1.278 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.082 4.082 11 C -0.130 4.130 12 C 0.513 3.487 13 O -0.591 6.591 14 N -0.707 5.707 15 C 0.126 3.874 16 C 0.088 3.912 17 H 0.091 0.909 18 C -0.148 4.148 19 C -0.117 4.117 20 C -0.155 4.155 21 C 0.059 3.941 22 N -0.687 5.687 23 H 0.265 0.735 24 H 0.000 1.000 25 H 0.001 0.999 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.418 0.582 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 -27.762 1.189 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.120 4.120 11 C -0.170 4.170 12 C 0.301 3.699 13 O -0.472 6.472 14 N -0.359 5.359 15 C 0.002 3.998 16 C -0.023 4.023 17 H 0.109 0.891 18 C -0.188 4.188 19 C -0.154 4.154 20 C -0.195 4.195 21 C -0.071 4.071 22 N -0.317 5.317 23 H 0.074 0.926 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.256 0.744 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.811 -27.149 0.860 27.175 hybrid contribution 0.689 0.282 0.320 0.811 sum 1.501 -26.867 1.180 26.934 Atomic orbital electron populations 1.70066 1.07523 1.27864 1.51540 1.25925 0.95844 1.03105 0.94671 0.85543 0.78381 0.78319 0.79070 1.20309 1.19408 1.19413 1.21680 0.93352 0.92852 1.50820 0.93055 1.19017 0.94200 0.92388 0.95487 1.21153 0.97596 0.93060 1.00181 1.21652 0.97956 0.91810 1.05544 1.21034 0.89256 0.85031 0.74619 1.90651 1.19062 1.85651 1.51809 1.45769 1.11521 1.04173 1.74437 1.21390 0.91724 0.85219 1.01465 1.21696 0.92729 0.91859 0.95994 0.89058 1.22168 0.98462 0.95215 1.02920 1.21533 0.98177 0.96678 0.99054 1.22235 0.98485 1.00272 0.98478 1.22040 0.95513 0.86477 1.03043 1.60627 1.28144 1.36862 1.06053 0.92640 0.98117 0.98095 0.94175 0.94199 0.87622 0.87599 0.74419 0.91925 0.92791 0.90809 0.91855 0.91408 0.91526 0.92204 0.90596 0.90027 0.90756 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.55 -32.93 9.11 25.60 0.23 -32.70 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.08 -3.72 4.44 30.59 0.14 -3.58 16 11 C -0.13 -4.41 5.70 29.85 0.17 -4.24 16 12 C 0.51 16.90 7.83 87.66 0.69 17.58 16 13 O -0.59 -24.74 15.98 -3.03 -0.05 -24.79 16 14 N -0.71 -16.53 5.39 -463.07 -2.49 -19.02 16 15 C 0.13 2.55 5.32 86.38 0.46 3.01 16 16 C 0.09 1.20 2.58 44.94 0.12 1.31 16 17 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 18 C -0.15 -1.71 5.36 30.65 0.16 -1.55 16 19 C -0.12 -1.12 6.00 30.67 0.18 -0.94 16 20 C -0.16 -1.39 6.08 30.65 0.19 -1.21 16 21 C 0.06 0.60 6.55 86.32 0.57 1.17 16 22 N -0.69 -8.99 5.94 -491.70 -2.92 -11.91 16 23 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 24 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 25 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 27 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 28 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 29 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.42 7.95 8.14 -92.71 -0.75 7.19 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 37 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.34 4.61 8.79 -89.70 -0.79 3.82 16 Total: -1.00 -71.19 332.17 -0.19 -71.38 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -0.55 Total: 12.47 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 3.51 Total: -18.96 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -5.13 Total: -87.90 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.79 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -71.19 -0.19 -71.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594426582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.577 kcal (2) G-P(sol) polarization free energy of solvation -71.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds