Wall clock time and date at job start Mon Mar 30 2020 04:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 115.54821 * 2 1 4 4 N 1.46501 * 109.46982 * 279.51524 * 3 2 1 5 5 C 1.34776 * 119.99898 * 175.11880 * 4 3 2 6 6 O 1.21291 * 120.00004 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00221 * 180.02562 * 5 4 3 8 8 H 1.09000 * 109.47250 * 320.00222 * 7 5 4 9 9 N 1.46896 * 109.47541 * 200.00302 * 7 5 4 10 10 C 1.53002 * 109.46888 * 80.00041 * 7 5 4 11 11 C 1.53001 * 109.46927 * 185.00323 * 10 7 5 12 12 C 1.52998 * 109.46795 * 180.02562 * 11 10 7 13 13 C 1.50711 * 109.47030 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99751 * 359.97438 * 13 12 11 15 15 C 1.37869 * 119.99699 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00859 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99539 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47163 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46894 * 120.00087 * 17 15 13 20 20 H 1.48496 * 109.47371 * 239.99901 * 17 15 13 21 21 C 1.53004 * 117.51364 * 145.69599 * 2 1 3 22 22 C 1.53001 * 117.49768 * 214.32754 * 2 1 3 23 23 H 1.09005 * 109.46588 * 64.04629 * 1 2 3 24 24 H 1.09003 * 109.47306 * 184.04329 * 1 2 3 25 25 H 1.08999 * 109.47245 * 304.04554 * 1 2 3 26 26 H 1.09009 * 109.46977 * 159.52074 * 3 2 1 27 27 H 1.08999 * 109.47456 * 39.52056 * 3 2 1 28 28 H 0.96995 * 120.00257 * 355.12005 * 4 3 2 29 29 H 1.00904 * 111.00074 * 300.00252 * 9 7 5 30 30 H 1.00905 * 111.00353 * 63.95016 * 9 7 5 31 31 H 1.09006 * 109.47129 * 65.00456 * 10 7 5 32 32 H 1.08994 * 109.47177 * 305.00444 * 10 7 5 33 33 H 1.08991 * 109.47511 * 59.99867 * 11 10 7 34 34 H 1.09004 * 109.46848 * 299.99788 * 11 10 7 35 35 H 1.09003 * 109.47326 * 299.99170 * 12 11 10 36 36 H 1.08997 * 109.47703 * 60.00129 * 12 11 10 37 37 H 0.96993 * 120.00580 * 180.02562 * 16 15 13 38 38 H 1.09004 * 117.49581 * 214.96785 * 21 2 1 39 39 H 1.08992 * 117.50395 * 359.97438 * 21 2 1 40 40 H 1.08994 * 117.50153 * 359.97438 * 22 2 1 41 41 H 1.09003 * 117.49487 * 145.00078 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 2.1944 1.9194 -1.3622 5 6 2.6389 3.1712 -1.5901 6 8 3.0354 3.8513 -0.6674 7 6 2.6431 3.7260 -2.9913 8 1 2.9568 2.9492 -3.6886 9 7 3.5762 4.8579 -3.0670 10 6 1.2350 4.2005 -3.3561 11 6 1.2107 4.6479 -4.8190 12 6 -0.1972 5.1229 -5.1836 13 6 -0.2214 5.5631 -6.6248 14 1 0.6777 5.5097 -7.2209 15 6 -1.3912 6.0339 -7.1823 16 7 -2.4861 6.0984 -6.4567 17 14 -1.4209 6.5801 -8.9685 18 1 -0.0701 6.4086 -9.5611 19 1 -2.3998 5.7558 -9.7219 20 1 -1.8166 8.0094 -9.0425 21 6 2.2368 -1.1210 0.7648 22 6 2.2364 -1.1208 -0.7653 23 1 -0.3633 0.4498 -0.9241 24 1 -0.3634 -1.0251 0.0725 25 1 -0.3634 0.5753 0.8515 26 1 3.2152 1.2930 0.3596 27 1 1.6314 2.0501 0.6539 28 1 1.8776 1.3754 -2.1002 29 1 3.3068 5.5920 -2.4292 30 1 4.5238 4.5578 -2.8932 31 1 0.9562 5.0372 -2.7155 32 1 0.5280 3.3831 -3.2143 33 1 1.4895 3.8113 -5.4595 34 1 1.9177 5.4654 -4.9607 35 1 -0.9046 4.3058 -5.0419 36 1 -0.4757 5.9598 -4.5431 37 1 -3.3092 6.4293 -6.8490 38 1 3.1721 -0.8750 1.2678 39 1 1.6120 -1.8584 1.2684 40 1 1.6113 -1.8583 -1.2685 41 1 3.1714 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594433065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:40 Heat of formation + Delta-G solvation = -44.465731 kcal Electronic energy + Delta-G solvation = -18596.364573 eV Core-core repulsion = 15703.677517 eV Total energy + Delta-G solvation = -2892.687056 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.09110 -38.47833 -35.68474 -34.20148 -33.31079 -31.32552 -29.15881 -28.19577 -26.93128 -24.59070 -22.88390 -22.21836 -20.24923 -19.98741 -19.45119 -17.14926 -16.55984 -16.23326 -15.69196 -15.62490 -15.03634 -14.48906 -14.41227 -14.05103 -13.75654 -13.34180 -13.02495 -12.86427 -12.49634 -12.35313 -11.88468 -11.74529 -11.59629 -11.44244 -11.12759 -10.74729 -10.63352 -10.58037 -10.40376 -10.31798 -10.06569 -9.58688 -9.22179 -9.16093 -9.00789 -8.52978 -8.28511 -5.94026 -3.95550 2.60692 2.96234 3.34883 3.42251 3.47065 3.56427 4.26595 4.36695 4.50972 4.56962 4.60822 4.65059 4.90653 5.19730 5.26715 5.28910 5.41803 5.43249 5.44815 5.52208 5.56293 5.61215 5.71568 5.76509 5.94106 5.96477 6.15093 6.32055 6.47006 6.84530 7.03529 7.12829 7.26731 7.44725 7.54534 7.76811 7.92310 8.07806 8.16439 8.51237 9.12421 9.68271 11.17453 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.025810 B = 0.003700 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.600661 B = 7566.146112 C = 8212.307344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.146 4.146 3 C 0.155 3.845 4 N -0.725 5.725 5 C 0.481 3.519 6 O -0.553 6.553 7 C 0.078 3.922 8 H 0.100 0.900 9 N -0.811 5.811 10 C -0.103 4.103 11 C -0.100 4.100 12 C 0.019 3.981 13 C -0.515 4.515 14 H 0.056 0.944 15 C 0.054 3.946 16 N -0.898 5.898 17 Si 0.890 3.110 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.165 4.165 22 C -0.172 4.172 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.403 0.597 29 H 0.350 0.650 30 H 0.337 0.663 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.012 0.988 36 H 0.014 0.986 37 H 0.259 0.741 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.444 -14.605 13.162 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.146 4.146 3 C 0.031 3.969 4 N -0.378 5.378 5 C 0.267 3.733 6 O -0.431 6.431 7 C -0.038 4.038 8 H 0.117 0.883 9 N -0.340 5.340 10 C -0.141 4.141 11 C -0.138 4.138 12 C -0.018 4.018 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.202 4.202 22 C -0.209 4.209 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.238 0.762 29 H 0.164 0.836 30 H 0.149 0.851 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.030 0.970 36 H 0.032 0.968 37 H 0.068 0.932 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.318 -13.974 13.053 21.271 hybrid contribution -0.136 -0.271 -0.191 0.358 sum 9.183 -14.244 12.862 21.276 Atomic orbital electron populations 1.21338 0.91248 1.02039 1.02676 1.21728 0.95535 0.90487 1.06890 1.20784 0.99854 0.91784 0.84430 1.46138 1.65986 1.15763 1.09869 1.22561 0.76087 0.81051 0.93636 1.90669 1.47728 1.58720 1.45942 1.21757 0.97218 0.94355 0.90463 0.88260 1.59048 1.04865 1.10188 1.59869 1.21646 0.91118 1.00875 1.00491 1.21537 1.00885 1.00268 0.91064 1.19130 0.90438 0.96115 0.96148 1.21328 0.95500 1.41851 0.96693 0.92602 1.25032 0.95784 0.95994 0.97799 1.69975 1.00351 1.47354 1.36063 0.86566 0.77995 0.78270 0.85354 1.19709 1.21127 1.21083 1.23058 1.02221 1.00335 0.94592 1.23054 1.02507 1.00797 0.94529 0.91632 0.92261 0.91910 0.91886 0.90899 0.76193 0.83592 0.85082 0.91960 0.91942 0.93693 0.91844 0.96970 0.96779 0.93183 0.88634 0.88408 0.88354 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.72 37.16 0.36 -0.55 16 2 C -0.15 -1.16 2.13 -154.51 -0.33 -1.49 16 3 C 0.16 1.57 5.58 -4.04 -0.02 1.55 16 4 N -0.73 -7.88 5.52 -60.29 -0.33 -8.21 16 5 C 0.48 6.63 7.07 -10.99 -0.08 6.55 16 6 O -0.55 -9.36 16.25 5.55 0.09 -9.27 16 7 C 0.08 1.07 3.15 -68.87 -0.22 0.86 16 8 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 9 N -0.81 -11.31 8.44 -5.66 -0.05 -11.35 16 10 C -0.10 -1.72 4.84 -26.73 -0.13 -1.85 16 11 C -0.10 -2.05 5.04 -26.73 -0.13 -2.18 16 12 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 13 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 14 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 C -0.16 -1.11 9.87 -26.72 -0.26 -1.37 16 22 C -0.17 -1.19 9.85 -26.72 -0.26 -1.46 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.65 7.94 -51.92 -0.41 0.24 16 27 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 28 H 0.40 3.70 8.40 -40.82 -0.34 3.36 16 29 H 0.35 5.09 8.58 -39.29 -0.34 4.75 16 30 H 0.34 4.08 9.06 -39.29 -0.36 3.72 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.35 7.75 -51.93 -0.40 0.95 16 35 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.10 0.62 8.08 -51.93 -0.42 0.20 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 342.79 15.07 5.17 5.17 Total: -1.00 -32.45 342.79 -8.34 -40.79 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.30 Total: 5.82 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -1.63 Total: -13.24 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.36 Total: -46.18 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.45 -8.34 -40.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594433065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.675 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds