Wall clock time and date at job start Mon Mar 30 2020 04:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 112.85153 * 2 1 4 4 C 1.53789 * 113.61038 * 131.19655 * 2 1 3 5 5 C 1.53780 * 87.07893 * 89.11518 * 4 2 1 6 6 C 1.53006 * 113.61053 * 139.97929 * 5 4 2 7 7 N 1.46902 * 109.46626 * 176.52548 * 6 5 4 8 8 C 1.46905 * 110.99800 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47194 * 180.02562 * 8 7 6 10 10 O 1.21276 * 119.99771 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99867 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00193 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47527 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00027 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00148 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00237 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00140 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47305 * 89.99368 * 17 15 13 19 19 H 1.48502 * 109.47123 * 209.99838 * 17 15 13 20 20 H 1.48504 * 109.46868 * 329.99660 * 17 15 13 21 21 C 1.53777 * 87.17394 * 25.38935 * 5 4 2 22 22 H 1.09007 * 109.47013 * 288.80594 * 1 2 3 23 23 H 1.08998 * 109.47014 * 48.80014 * 1 2 3 24 24 H 1.08998 * 109.47348 * 168.80291 * 1 2 3 25 25 H 1.08999 * 109.46898 * 191.19448 * 3 2 1 26 26 H 1.08997 * 109.47016 * 311.19487 * 3 2 1 27 27 H 1.08996 * 109.46824 * 71.19568 * 3 2 1 28 28 H 1.08992 * 113.61445 * 334.56320 * 4 2 1 29 29 H 1.09001 * 113.61082 * 203.66197 * 4 2 1 30 30 H 1.08998 * 113.61602 * 270.79563 * 5 4 2 31 31 H 1.08993 * 109.46955 * 296.52894 * 6 5 4 32 32 H 1.09000 * 109.47050 * 56.52723 * 6 5 4 33 33 H 1.00898 * 110.99915 * 56.05185 * 7 6 5 34 34 H 1.09002 * 109.47091 * 300.00139 * 8 7 6 35 35 H 1.09001 * 109.46854 * 60.00166 * 8 7 6 36 36 H 0.96999 * 120.00108 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.46687 * 299.99760 * 12 11 9 38 38 H 1.08996 * 109.47194 * 59.99071 * 12 11 9 39 39 H 0.97002 * 120.00326 * 180.02562 * 16 15 13 40 40 H 1.08999 * 113.61825 * 89.16304 * 21 5 4 41 41 H 1.09009 * 113.61337 * 220.05752 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 2.0929 -2.0426 0.0020 6 6 3.3264 -2.9479 0.0029 7 7 3.1444 -4.0242 -0.9801 8 6 4.3117 -4.9158 -1.0066 9 6 4.0893 -6.0044 -2.0247 10 8 3.0600 -6.0343 -2.6654 11 7 5.0342 -6.9446 -2.2231 12 6 4.8183 -8.0026 -3.2132 13 6 6.0157 -8.9172 -3.2404 14 1 6.8536 -8.7295 -2.5853 15 6 6.0411 -9.9943 -4.1007 16 7 7.0858 -10.7928 -4.1241 17 14 4.5916 -10.3195 -5.2332 18 1 4.7975 -9.6047 -6.5185 19 1 4.4815 -11.7780 -5.4900 20 1 3.3434 -9.8343 -4.5914 21 6 2.1448 -0.9318 -1.0601 22 1 -0.3633 0.3313 0.9729 23 1 -0.3633 0.6769 -0.7732 24 1 -0.3634 -1.0081 -0.1995 25 1 3.1943 1.3532 -0.1995 26 1 1.6416 2.0076 -0.7733 27 1 1.9600 1.8733 0.9728 28 1 1.4945 -1.1068 1.9156 29 1 3.1590 -0.6487 1.3496 30 1 1.1573 -2.6019 0.0035 31 1 4.2073 -2.3618 -0.2587 32 1 3.4590 -3.3802 0.9947 33 1 2.9553 -3.6482 -1.8971 34 1 5.1998 -4.3436 -1.2751 35 1 4.4507 -5.3617 -0.0218 36 1 5.8573 -6.9209 -1.7104 37 1 3.9298 -8.5746 -2.9458 38 1 4.6802 -7.5561 -4.1979 39 1 7.1039 -11.5504 -4.7296 40 1 3.1575 -0.6534 -1.3517 41 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701994649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:43 Heat of formation + Delta-G solvation = -34.984944 kcal Electronic energy + Delta-G solvation = -18294.905304 eV Core-core repulsion = 15402.629366 eV Total energy + Delta-G solvation = -2892.275938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.08469 -38.92022 -35.56157 -34.20720 -32.35183 -31.41086 -28.69058 -27.72394 -26.91247 -25.97533 -24.08367 -21.81747 -20.83483 -19.80885 -18.51187 -17.37742 -16.38399 -15.77435 -15.60947 -15.15193 -14.77933 -14.62511 -14.20406 -14.05575 -13.80707 -13.38986 -13.02462 -12.95332 -12.55826 -12.43612 -12.22586 -12.16251 -12.07994 -11.73898 -11.54165 -11.02475 -10.92787 -10.75301 -10.74062 -10.26810 -10.13343 -9.96294 -9.48963 -9.17538 -8.77202 -8.40659 -8.11483 -6.21098 -4.23308 3.25349 3.28753 3.34114 3.43383 3.72592 4.20916 4.31588 4.34450 4.42837 4.49115 4.66907 4.92924 5.14097 5.16882 5.25984 5.32052 5.32925 5.35577 5.45527 5.48924 5.52005 5.56617 5.58635 5.64118 5.66808 5.72321 5.76223 5.92416 5.95677 6.20767 6.34790 6.78423 6.95968 7.08792 7.25399 7.37701 7.41929 8.15303 8.53389 8.76054 8.96844 9.39288 10.90841 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.054549 B = 0.003001 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.177173 B = 9326.986618 C = 9592.911926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 C -0.135 4.135 4 C -0.126 4.126 5 C -0.106 4.106 6 C 0.069 3.931 7 N -0.672 5.672 8 C 0.040 3.960 9 C 0.498 3.502 10 O -0.546 6.546 11 N -0.708 5.708 12 C 0.221 3.779 13 C -0.543 4.543 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.893 5.893 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.132 4.132 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.350 0.650 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.396 0.604 37 H 0.025 0.975 38 H 0.020 0.980 39 H 0.268 0.732 40 H 0.078 0.922 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.326 22.105 10.083 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.192 4.192 4 C -0.164 4.164 5 C -0.124 4.124 6 C -0.060 4.060 7 N -0.304 5.304 8 C -0.092 4.092 9 C 0.283 3.717 10 O -0.424 6.424 11 N -0.357 5.357 12 C 0.099 3.901 13 C -0.581 4.581 14 H 0.097 0.903 15 C -0.127 4.127 16 N -0.530 5.530 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.185 1.185 21 C -0.169 4.169 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.169 0.831 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.229 0.771 37 H 0.043 0.957 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.334 21.482 9.944 25.446 hybrid contribution 0.556 0.203 -0.826 1.016 sum -8.779 21.685 9.118 25.108 Atomic orbital electron populations 1.21600 0.93222 1.02153 1.01623 1.21791 0.95560 0.94303 0.97360 1.21726 1.00421 0.95600 1.01493 1.23063 1.00992 0.95722 0.96582 1.22522 0.99377 0.93905 0.96634 1.21975 0.95897 0.91440 0.96672 1.60112 1.37944 1.20057 1.12322 1.21824 0.92777 0.94580 1.00058 1.20431 0.84114 0.83213 0.83982 1.90650 1.27131 1.75530 1.49118 1.46167 1.19763 1.28243 1.41546 1.19472 0.97805 0.85525 0.87302 1.21099 1.02657 1.10469 1.23902 0.90276 1.24803 0.96046 0.95261 0.96569 1.69881 1.29184 1.16058 1.37911 0.86806 0.83610 0.77702 0.81515 1.19877 1.20901 1.18451 1.23219 1.00943 0.95928 0.96858 0.92532 0.92525 0.92133 0.92655 0.92753 0.92719 0.91455 0.90194 0.88238 0.95329 0.90967 0.83069 0.92773 0.88444 0.77083 0.95701 0.96258 0.92268 0.90352 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 9.07 37.16 0.34 -0.60 16 2 C -0.09 -0.69 1.39 -153.60 -0.21 -0.90 16 3 C -0.14 -0.92 9.20 37.16 0.34 -0.58 16 4 C -0.13 -0.97 6.79 -25.92 -0.18 -1.15 16 5 C -0.11 -0.97 3.54 -89.81 -0.32 -1.29 16 6 C 0.07 0.71 5.51 -3.82 -0.02 0.69 16 7 N -0.67 -9.02 6.13 -115.05 -0.70 -9.72 16 8 C 0.04 0.56 6.17 -4.97 -0.03 0.52 16 9 C 0.50 9.56 7.87 -10.99 -0.09 9.47 16 10 O -0.55 -12.62 16.20 5.56 0.09 -12.53 16 11 N -0.71 -14.41 5.55 -61.48 -0.34 -14.75 16 12 C 0.22 5.51 4.50 -5.20 -0.02 5.48 16 13 C -0.54 -15.01 9.83 -34.44 -0.34 -15.35 16 14 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 15 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 17 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.26 -6.40 6.54 56.52 0.37 -6.04 16 21 C -0.13 -1.14 6.76 -25.83 -0.17 -1.31 16 22 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.47 7.34 -51.93 -0.38 0.09 16 25 H 0.05 0.37 7.96 -51.93 -0.41 -0.04 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.08 0.58 8.06 -51.93 -0.42 0.17 16 30 H 0.10 1.03 7.66 -51.93 -0.40 0.64 16 31 H 0.03 0.27 7.87 -51.93 -0.41 -0.14 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.35 4.90 8.43 -39.29 -0.33 4.57 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.40 7.02 8.32 -40.82 -0.34 6.68 16 37 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 38 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.08 0.67 7.75 -51.93 -0.40 0.26 16 41 H 0.07 0.63 8.10 -51.92 -0.42 0.21 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -31.69 333.65 -7.86 -39.55 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.24 Total: 4.25 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.80 Total: -2.91 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.27 Total: -50.35 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.69 -7.86 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701994649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.567 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds